RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 ELOA2Q8IYF1 753 aaPredicted RBP6.7□□□□□ -1.34
HMGB3-202ENST00000419110 C4orf32Q8N8J7 132 aa6.7□□□□□ -1.34
HMGB3-202ENST00000419110 TRIML1Q8N9V2 468 aa6.7□□□□□ -1.34
HMGB3-202ENST00000419110 SMC1BQ8NDV3 1235 aa6.7□□□□□ -1.34
HMGB3-202ENST00000419110 ETNPPLQ8TBG4 499 aa6.7□□□□□ -1.34
HMGB3-202ENST00000419110 NEK9Q8TD19 979 aa6.7□□□□□ -1.34
HMGB3-202ENST00000419110 SYTL5Q8TDW5 730 aaPredicted RBP6.7□□□□□ -1.34
HMGB3-202ENST00000419110 EPSTI1Q96J88 318 aa6.7□□□□□ -1.34
HMGB3-202ENST00000419110 MTMR9Q96QG7 549 aa6.7□□□□□ -1.34
HMGB3-202ENST00000419110 RMDN3Q96TC7 470 aa6.7□□□□□ -1.34
HMGB3-202ENST00000419110 FUCA2Q9BTY2 467 aa6.7□□□□□ -1.34
HMGB3-202ENST00000419110 TEKT3Q9BXF9 490 aa6.7□□□□□ -1.34
HMGB3-202ENST00000419110 ADAM33Q9BZ11 813 aa6.7□□□□□ -1.34
HMGB3-202ENST00000419110 WDR11Q9BZH6 1224 aa6.7□□□□□ -1.34
HMGB3-202ENST00000419110 NT5C3AQ9H0P0 336 aa6.7□□□□□ -1.34
HMGB3-202ENST00000419110 TTC12Q9H892 705 aaPredicted RBP6.7□□□□□ -1.34
HMGB3-202ENST00000419110 A1CFQ9NQ94 594 aaKnown RBP6.7□□□□□ -1.34
HMGB3-202ENST00000419110 PXMP2Q9NR77 195 aa6.7□□□□□ -1.34
HMGB3-202ENST00000419110 RMND1Q9NWS8 449 aa6.7□□□□□ -1.34
HMGB3-202ENST00000419110 ADD3Q9UEY8 706 aaKnown RBP6.7□□□□□ -1.34
HMGB3-202ENST00000419110 SERTAD1Q9UHV2 236 aa6.7□□□□□ -1.34
HMGB3-202ENST00000419110 FRMPD3Q5JV73 1810 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 IGLV3-22A0A075B6J6 115 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 PP2D1A8MPX8 630 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 FAM86B1E9PN63 330 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 STAM2O75886 525 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 FAM86B2P0C5J1 330 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 BCRP11274 1271 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 DEKP35659 375 aaKnown RBP6.69□□□□□ -1.34
HMGB3-202ENST00000419110 CCT6AP40227 531 aaKnown RBP6.69□□□□□ -1.34
HMGB3-202ENST00000419110 TECP42680 631 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 GCLCP48506 637 aaPredicted RBP6.69□□□□□ -1.34
HMGB3-202ENST00000419110 NLRP12P59046 1061 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 PNOCQ13519 176 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 MTMR1Q13613 665 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 PGM5Q15124 567 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 E2F4Q16254 413 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 IL17AQ16552 155 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 SPRYD7Q5W111 196 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 PDXDC2PQ6P474 469 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.69□□□□□ -1.34
HMGB3-202ENST00000419110 NLRX1Q86UT6 975 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 NCAPG2Q86XI2 1143 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 ANKRD35Q8N283 1001 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 RNF214Q8ND24 703 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 SHCBP1Q8NEM2 672 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 IL31RAQ8NI17 732 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 NSUN6Q8TEA1 469 aaKnown RBP6.69□□□□□ -1.34
HMGB3-202ENST00000419110 LENG9Q96B70 501 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 CDHR1Q96JP9 859 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 CCDC43Q96MW1 224 aaKnown RBP6.69□□□□□ -1.34
HMGB3-202ENST00000419110 P2RX7Q99572 595 aaKnown RBP6.69□□□□□ -1.34
HMGB3-202ENST00000419110 PDCD2LQ9BRP1 358 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 ZNF577Q9BSK1 485 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 ZBED2Q9BTP6 218 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 GTPBP4Q9BZE4 634 aaKnown RBP6.69□□□□□ -1.34
HMGB3-202ENST00000419110 LRRC27Q9C0I9 530 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 ZCCHC17Q9NP64 241 aaKnown RBP6.69□□□□□ -1.34
HMGB3-202ENST00000419110 COL20A1Q9P218 1284 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 KIAA1468Q9P260 1216 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 PCDHA12Q9UN75 941 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 SYNRGQ9UMZ2 1314 aa6.69□□□□□ -1.34
HMGB3-202ENST00000419110 DOCK3Q8IZD9 2030 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 KAT6AQ92794 2004 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 A0A087X0B3 334 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 TESPA1A2RU30 521 aaPredicted RBP6.68□□□□□ -1.34
HMGB3-202ENST00000419110 MANSC4A6NHS7 340 aaPredicted RBP6.68□□□□□ -1.34
HMGB3-202ENST00000419110 BECN2A8MW95 431 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 GOLGA6L19H0YKK7 550 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 PDHXO00330 501 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 IPO5O00410 1097 aaKnown RBP6.68□□□□□ -1.34
HMGB3-202ENST00000419110 MSH4O15457 936 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 CHMP2AO43633 222 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 SLC10A3P09131 477 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 MYCLP12524 364 aaPredicted RBP6.68□□□□□ -1.34
HMGB3-202ENST00000419110 AFMP43652 599 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 PTPN5P54829 565 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 ERVK-9P63128 1117 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 ERVK-24P63145 666 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 ASIC1P78348 528 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 AMPD3Q01432 767 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 FMR1Q06787 632 aaKnown RBP eCLIP6.68□□□□□ -1.34
HMGB3-202ENST00000419110 SREBF2Q12772 1141 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 PPP2R5CQ13362 524 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 MOGSQ13724 837 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 BAATQ14032 418 aaPredicted RBP6.68□□□□□ -1.34
HMGB3-202ENST00000419110 PDIA5Q14554 519 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 KCTD2Q14681 263 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 LONRF3Q496Y0 759 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 TMEM119Q4V9L6 283 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 WDR78Q5VTH9 848 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 GPAT2Q6NUI2 795 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 USP49Q70CQ1 688 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 DNERQ8NFT8 737 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 BRI3BPQ8WY22 251 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 LARP4BQ92615 738 aaKnown RBP6.68□□□□□ -1.34
HMGB3-202ENST00000419110 HAS1Q92839 578 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 SLC5A5Q92911 643 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 GPRASP2Q96D09 838 aa6.68□□□□□ -1.34
HMGB3-202ENST00000419110 MMP19Q99542 508 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms