RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 STAM2O75886 525 aa17.12■□□□□ 0.33
RPS28-201ENST00000417088 LGALS2P05162 132 aa17.12■□□□□ 0.33
RPS28-201ENST00000417088 RSPH10BP0C881 870 aa17.12■□□□□ 0.33
RPS28-201ENST00000417088 THPOP40225 353 aa17.12■□□□□ 0.33
RPS28-201ENST00000417088 FAM117BQ6P1L5 589 aa17.12■□□□□ 0.33
RPS28-201ENST00000417088 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.12■□□□□ 0.33
RPS28-201ENST00000417088 DBF4BQ8NFT6 615 aa17.12■□□□□ 0.33
RPS28-201ENST00000417088 ATP6V0A1Q93050 837 aa17.12■□□□□ 0.33
RPS28-201ENST00000417088 MAP3K14Q99558 947 aa17.12■□□□□ 0.33
RPS28-201ENST00000417088 RNPEPQ9H4A4 650 aa17.12■□□□□ 0.33
RPS28-201ENST00000417088 LY9Q9HBG7 655 aa17.12■□□□□ 0.33
RPS28-201ENST00000417088 RTEL1Q9NZ71 1219 aa17.12■□□□□ 0.33
RPS28-201ENST00000417088 RBM8AQ9Y5S9 174 aaKnown RBP17.12■□□□□ 0.33
RPS28-201ENST00000417088 LINC01553A4QN01 128 aa17.11■□□□□ 0.33
RPS28-201ENST00000417088 NOP56O00567 594 aaKnown RBP17.11■□□□□ 0.33
RPS28-201ENST00000417088 TREHO43280 583 aa17.11■□□□□ 0.33
RPS28-201ENST00000417088 SMIM10L2AP0DMW4 78 aa17.11■□□□□ 0.33
RPS28-201ENST00000417088 SMIM10L2BP0DMW5 78 aa17.11■□□□□ 0.33
RPS28-201ENST00000417088 ERVK-21P61565 698 aa17.11■□□□□ 0.33
RPS28-201ENST00000417088 MKRN4PQ13434 485 aaPredicted RBP17.11■□□□□ 0.33
RPS28-201ENST00000417088 NEDD9Q14511 834 aa17.11■□□□□ 0.33
RPS28-201ENST00000417088 METTL7BQ6UX53 244 aa17.11■□□□□ 0.33
RPS28-201ENST00000417088 CYFIP1Q7L576 1253 aa17.11■□□□□ 0.33
RPS28-201ENST00000417088 ZNF654Q8IZM8 581 aa17.11■□□□□ 0.33
RPS28-201ENST00000417088 GDPD5Q8WTR4 605 aa17.11■□□□□ 0.33
RPS28-201ENST00000417088 TGS1Q96RS0 853 aaKnown RBP17.11■□□□□ 0.33
RPS28-201ENST00000417088 GPR20Q99678 358 aa17.11■□□□□ 0.33
RPS28-201ENST00000417088 MYL10Q9BUA6 226 aa17.11■□□□□ 0.33
RPS28-201ENST00000417088 SPZ1Q9BXG8 430 aa17.11■□□□□ 0.33
RPS28-201ENST00000417088 USP26Q9BXU7 913 aa17.11■□□□□ 0.33
RPS28-201ENST00000417088 LMCD1Q9NZU5 365 aa17.11■□□□□ 0.33
RPS28-201ENST00000417088 TELO2Q9Y4R8 837 aa17.11■□□□□ 0.33
RPS28-201ENST00000417088 EMSYQ7Z589 1322 aa17.11■□□□□ 0.33
RPS28-201ENST00000417088 FIBPO43427 364 aa17.1■□□□□ 0.33
RPS28-201ENST00000417088 DDAH1O94760 285 aa17.1■□□□□ 0.33
RPS28-201ENST00000417088 SMARCA1P28370 1054 aa17.1■□□□□ 0.33
RPS28-201ENST00000417088 PLEKHG4Q58EX7 1191 aa17.1■□□□□ 0.33
RPS28-201ENST00000417088 USP17L6PQ6QN14 398 aa17.1■□□□□ 0.33
RPS28-201ENST00000417088 CTCFLQ8NI51 663 aaPredicted RBP17.1■□□□□ 0.33
RPS28-201ENST00000417088 HLA-CQ95604 372 aa17.1■□□□□ 0.33
RPS28-201ENST00000417088 RRP36Q96EU6 259 aaKnown RBP17.1■□□□□ 0.33
RPS28-201ENST00000417088 SUGCTQ9HAC7 445 aa17.1■□□□□ 0.33
RPS28-201ENST00000417088 MTUS1Q9ULD2 1270 aa17.1■□□□□ 0.33
RPS28-201ENST00000417088 BRWD1Q9NSI6 2320 aa17.09■□□□□ 0.33
RPS28-201ENST00000417088 MEIS2O14770 477 aa17.09■□□□□ 0.33
RPS28-201ENST00000417088 COL9A1P20849 921 aa17.09■□□□□ 0.33
RPS28-201ENST00000417088 IRX6P78412 446 aaPredicted RBP17.09■□□□□ 0.33
RPS28-201ENST00000417088 PCNX4Q63HM2 1172 aa17.09■□□□□ 0.33
RPS28-201ENST00000417088 TRIM50Q86XT4 487 aa17.09■□□□□ 0.33
RPS28-201ENST00000417088 SMARCC2Q8TAQ2 1214 aa17.09■□□□□ 0.33
RPS28-201ENST00000417088 MTA3Q9BTC8 594 aa17.09■□□□□ 0.33
RPS28-201ENST00000417088 OSBPL7Q9BZF2 842 aa17.09■□□□□ 0.33
RPS28-201ENST00000417088 SETD4Q9NVD3 440 aa17.09■□□□□ 0.33
RPS28-201ENST00000417088 INSL6Q9Y581 213 aa17.09■□□□□ 0.33
RPS28-201ENST00000417088 COL4A4P53420 1690 aaPredicted RBP17.08■□□□□ 0.32
RPS28-201ENST00000417088 PIK3CDO00329 1044 aa17.08■□□□□ 0.32
RPS28-201ENST00000417088 PRC1O43663 620 aa17.08■□□□□ 0.32
RPS28-201ENST00000417088 PLEKHA8P1O95397 391 aa17.08■□□□□ 0.32
RPS28-201ENST00000417088 AMHP03971 560 aa17.08■□□□□ 0.32
RPS28-201ENST00000417088 KIF5BP33176 963 aa17.08■□□□□ 0.32
RPS28-201ENST00000417088 COL9A3Q14050 684 aaPredicted RBP17.08■□□□□ 0.32
RPS28-201ENST00000417088 UTP14CQ5TAP6 766 aaKnown RBP17.08■□□□□ 0.32
RPS28-201ENST00000417088 XRRA1Q6P2D8 792 aa17.08■□□□□ 0.32
RPS28-201ENST00000417088 CASC1Q6TDU7 716 aa17.08■□□□□ 0.32
RPS28-201ENST00000417088 MYOCDQ8IZQ8 938 aa17.08■□□□□ 0.32
RPS28-201ENST00000417088 SRBD1Q8N5C6 995 aaKnown RBP17.08■□□□□ 0.32
RPS28-201ENST00000417088 CUL5Q93034 780 aa17.08■□□□□ 0.32
RPS28-201ENST00000417088 SENP7Q9BQF6 1050 aa17.08■□□□□ 0.32
RPS28-201ENST00000417088 LZTS2Q9BRK4 669 aa17.08■□□□□ 0.32
RPS28-201ENST00000417088 SH2B2O14492 632 aaPredicted RBP17.07■□□□□ 0.32
RPS28-201ENST00000417088 CAND2O75155 1236 aa17.07■□□□□ 0.32
RPS28-201ENST00000417088 CTSHP09668 335 aa17.07■□□□□ 0.32
RPS28-201ENST00000417088 GNAT1P11488 350 aa17.07■□□□□ 0.32
RPS28-201ENST00000417088 ADAM17P78536 824 aa17.07■□□□□ 0.32
RPS28-201ENST00000417088 HTRA4P83105 476 aaPredicted RBP17.07■□□□□ 0.32
RPS28-201ENST00000417088 TMTC2Q8N394 836 aa17.07■□□□□ 0.32
RPS28-201ENST00000417088 SP7Q8TDD2 431 aaPredicted RBP17.07■□□□□ 0.32
RPS28-201ENST00000417088 SEC63Q9UGP8 760 aaKnown RBP17.07■□□□□ 0.32
RPS28-201ENST00000417088 MCM5P33992 734 aa17.06■□□□□ 0.32
RPS28-201ENST00000417088 GNAQP50148 359 aa17.06■□□□□ 0.32
RPS28-201ENST00000417088 SP4Q02446 784 aa17.06■□□□□ 0.32
RPS28-201ENST00000417088 NFXL1Q6ZNB6 911 aa17.06■□□□□ 0.32
RPS28-201ENST00000417088 NLRX1Q86UT6 975 aa17.06■□□□□ 0.32
RPS28-201ENST00000417088 CMTR1Q8N1G2 835 aaKnown RBP17.06■□□□□ 0.32
RPS28-201ENST00000417088 SEPT8Q92599 483 aa17.06■□□□□ 0.32
RPS28-201ENST00000417088 TMEM87BQ96K49 555 aa17.06■□□□□ 0.32
RPS28-201ENST00000417088 C17orf80Q9BSJ5 609 aa17.06■□□□□ 0.32
RPS28-201ENST00000417088 LSG1Q9H089 658 aaKnown RBP17.06■□□□□ 0.32
RPS28-201ENST00000417088 ZNF215Q9UL58 517 aaPredicted RBP17.06■□□□□ 0.32
RPS28-201ENST00000417088 DOCK5Q9H7D0 1870 aa17.05■□□□□ 0.32
RPS28-201ENST00000417088 MICAL3Q7RTP6 2002 aa17.05■□□□□ 0.32
RPS28-201ENST00000417088 CCDC69A6NI79 296 aa17.05■□□□□ 0.32
RPS28-201ENST00000417088 SLC27A2O14975 620 aa17.05■□□□□ 0.32
RPS28-201ENST00000417088 ATP9AO75110 1047 aa17.05■□□□□ 0.32
RPS28-201ENST00000417088 RXRAP19793 462 aa17.05■□□□□ 0.32
RPS28-201ENST00000417088 ARHGAP4P98171 946 aa17.05■□□□□ 0.32
RPS28-201ENST00000417088 FAM26DQ5JW98 314 aa17.05■□□□□ 0.32
RPS28-201ENST00000417088 GIMAP8Q8ND71 665 aaPredicted RBP17.05■□□□□ 0.32
RPS28-201ENST00000417088 FBXO22Q8NEZ5 403 aa17.05■□□□□ 0.32
RPS28-201ENST00000417088 LMBR1Q8WVP7 490 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms