RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 SAMD3Q8N6K7 520 aa13.36□□□□□ -0.27
USP4-204ENST00000416417 CTCFLQ8NI51 663 aaPredicted RBP13.36□□□□□ -0.27
USP4-204ENST00000416417 SMARCC2Q8TAQ2 1214 aa13.36□□□□□ -0.27
USP4-204ENST00000416417 GDPD5Q8WTR4 605 aa13.36□□□□□ -0.27
USP4-204ENST00000416417 ATP6V0A1Q93050 837 aa13.36□□□□□ -0.27
USP4-204ENST00000416417 RRP36Q96EU6 259 aaKnown RBP13.36□□□□□ -0.27
USP4-204ENST00000416417 TRANK1O15050 2925 aa13.36□□□□□ -0.27
USP4-204ENST00000416417 C17orf102A2RUQ5 167 aa13.35□□□□□ -0.27
USP4-204ENST00000416417 SPATA31C2B4DYI2 1134 aa13.35□□□□□ -0.27
USP4-204ENST00000416417 H3BRB1 525 aa13.35□□□□□ -0.27
USP4-204ENST00000416417 NOP56O00567 594 aaKnown RBP13.35□□□□□ -0.27
USP4-204ENST00000416417 SH2B2O14492 632 aaPredicted RBP13.35□□□□□ -0.27
USP4-204ENST00000416417 MEIS2O14770 477 aa13.35□□□□□ -0.27
USP4-204ENST00000416417 GTPBP6O43824 516 aaPredicted RBP13.35□□□□□ -0.27
USP4-204ENST00000416417 UBE2SQ16763 222 aa13.35□□□□□ -0.27
USP4-204ENST00000416417 SERINC5Q86VE9 423 aa13.35□□□□□ -0.27
USP4-204ENST00000416417 DBF4BQ8NFT6 615 aa13.35□□□□□ -0.27
USP4-204ENST00000416417 INPP4AQ96PE3 977 aaPredicted RBP13.35□□□□□ -0.27
USP4-204ENST00000416417 GPR20Q99678 358 aa13.35□□□□□ -0.27
USP4-204ENST00000416417 SPZ1Q9BXG8 430 aa13.35□□□□□ -0.27
USP4-204ENST00000416417 RNPEPQ9H4A4 650 aa13.35□□□□□ -0.27
USP4-204ENST00000416417 TUT1Q9H6E5 874 aaKnown RBP13.35□□□□□ -0.27
USP4-204ENST00000416417 SETD4Q9NVD3 440 aa13.35□□□□□ -0.27
USP4-204ENST00000416417 PKD2L1Q9P0L9 805 aa13.35□□□□□ -0.27
USP4-204ENST00000416417 FRMPD4Q14CM0 1322 aa13.35□□□□□ -0.27
USP4-204ENST00000416417 CCDC69A6NI79 296 aa13.34□□□□□ -0.27
USP4-204ENST00000416417 RSPH10B2B2RC85 870 aa13.34□□□□□ -0.27
USP4-204ENST00000416417 LPXNO60711 386 aa13.34□□□□□ -0.27
USP4-204ENST00000416417 LGR5O75473 907 aa13.34□□□□□ -0.27
USP4-204ENST00000416417 DDAH1O94760 285 aa13.34□□□□□ -0.27
USP4-204ENST00000416417 RSPH10BP0C881 870 aa13.34□□□□□ -0.27
USP4-204ENST00000416417 TGFB3P10600 412 aa13.34□□□□□ -0.27
USP4-204ENST00000416417 TRAF1Q13077 416 aa13.34□□□□□ -0.27
USP4-204ENST00000416417 GNPTABQ3T906 1256 aa13.34□□□□□ -0.27
USP4-204ENST00000416417 UHRF1Q96T88 793 aaPredicted RBP13.34□□□□□ -0.27
USP4-204ENST00000416417 ESYT1Q9BSJ8 1104 aa13.34□□□□□ -0.27
USP4-204ENST00000416417 DOCK5Q9H7D0 1870 aa13.34□□□□□ -0.27
USP4-204ENST00000416417 ABHD14A-ACY1A0A1B0GW23 586 aa13.34□□□□□ -0.27
USP4-204ENST00000416417 ATP9AO75110 1047 aa13.34□□□□□ -0.27
USP4-204ENST00000416417 ICAM3P32942 547 aa13.34□□□□□ -0.27
USP4-204ENST00000416417 KIF5BP33176 963 aa13.34□□□□□ -0.27
USP4-204ENST00000416417 MCM5P33992 734 aa13.34□□□□□ -0.27
USP4-204ENST00000416417 IKBKEQ14164 716 aa13.34□□□□□ -0.27
USP4-204ENST00000416417 CREB3L3Q68CJ9 461 aa13.34□□□□□ -0.27
USP4-204ENST00000416417 METTL7BQ6UX53 244 aa13.34□□□□□ -0.27
USP4-204ENST00000416417 IL27Q8NEV9 243 aa13.34□□□□□ -0.27
USP4-204ENST00000416417 CUL5Q93034 780 aa13.34□□□□□ -0.27
USP4-204ENST00000416417 TCEANC2Q96MN5 208 aa13.34□□□□□ -0.27
USP4-204ENST00000416417 ANO2Q9NQ90 1003 aa13.34□□□□□ -0.27
USP4-204ENST00000416417 SEC63Q9UGP8 760 aaKnown RBP13.34□□□□□ -0.27
USP4-204ENST00000416417 COL4A4P53420 1690 aaPredicted RBP13.33□□□□□ -0.28
USP4-204ENST00000416417 LINC01553A4QN01 128 aa13.33□□□□□ -0.28
USP4-204ENST00000416417 FIBPO43427 364 aa13.33□□□□□ -0.28
USP4-204ENST00000416417 GJB5O95377 273 aa13.33□□□□□ -0.28
USP4-204ENST00000416417 BMP1P13497 986 aa13.33□□□□□ -0.28
USP4-204ENST00000416417 NEDD9Q14511 834 aa13.33□□□□□ -0.28
USP4-204ENST00000416417 PCNX4Q63HM2 1172 aa13.33□□□□□ -0.28
USP4-204ENST00000416417 MYOCDQ8IZQ8 938 aa13.33□□□□□ -0.28
USP4-204ENST00000416417 RAD9AQ99638 391 aa13.33□□□□□ -0.28
USP4-204ENST00000416417 TSPYL2Q9H2G4 693 aaPredicted RBP13.33□□□□□ -0.28
USP4-204ENST00000416417 RAPGEFL1Q9UHV5 662 aa13.33□□□□□ -0.28
USP4-204ENST00000416417 UPP2O95045 317 aa13.32□□□□□ -0.28
USP4-204ENST00000416417 PARNO95453 639 aaKnown RBP13.32□□□□□ -0.28
USP4-204ENST00000416417 POU3F3P20264 500 aaPredicted RBP13.32□□□□□ -0.28
USP4-204ENST00000416417 MARK3P27448 753 aa13.32□□□□□ -0.28
USP4-204ENST00000416417 HOXC8P31273 242 aa13.32□□□□□ -0.28
USP4-204ENST00000416417 ARHGAP4P98171 946 aa13.32□□□□□ -0.28
USP4-204ENST00000416417 NECTIN1Q15223 517 aa13.32□□□□□ -0.28
USP4-204ENST00000416417 RUFY4Q6ZNE9 571 aa13.32□□□□□ -0.28
USP4-204ENST00000416417 MICU3Q86XE3 530 aa13.32□□□□□ -0.28
USP4-204ENST00000416417 ZBTB10Q96DT7 871 aa13.32□□□□□ -0.28
USP4-204ENST00000416417 MAP3K14Q99558 947 aa13.32□□□□□ -0.28
USP4-204ENST00000416417 C17orf80Q9BSJ5 609 aa13.32□□□□□ -0.28
USP4-204ENST00000416417 PSTPIP2Q9H939 334 aa13.32□□□□□ -0.28
USP4-204ENST00000416417 SUGCTQ9HAC7 445 aa13.32□□□□□ -0.28
USP4-204ENST00000416417 MUC3AQ02505 3323 aa13.32□□□□□ -0.28
USP4-204ENST00000416417 TTC28Q96AY4 2481 aa13.31□□□□□ -0.28
USP4-204ENST00000416417 ITGB5P18084 799 aa13.31□□□□□ -0.28
USP4-204ENST00000416417 HEATR3Q7Z4Q2 680 aa13.31□□□□□ -0.28
USP4-204ENST00000416417 LMBR1Q8WVP7 490 aa13.31□□□□□ -0.28
USP4-204ENST00000416417 PGBD1Q96JS3 809 aa13.31□□□□□ -0.28
USP4-204ENST00000416417 TMEM87BQ96K49 555 aa13.31□□□□□ -0.28
USP4-204ENST00000416417 USP26Q9BXU7 913 aa13.31□□□□□ -0.28
USP4-204ENST00000416417 SLC12A7Q9Y666 1083 aa13.31□□□□□ -0.28
USP4-204ENST00000416417 PRRC2BQ5JSZ5 2229 aaKnown RBP13.31□□□□□ -0.28
USP4-204ENST00000416417 TCF20Q9UGU0 1960 aaKnown RBP13.3□□□□□ -0.28
USP4-204ENST00000416417 PIK3CDO00329 1044 aa13.3□□□□□ -0.28
USP4-204ENST00000416417 STAM2O75886 525 aa13.3□□□□□ -0.28
USP4-204ENST00000416417 TCF7P36402 384 aaPredicted RBP13.3□□□□□ -0.28
USP4-204ENST00000416417 GNAQP50148 359 aa13.3□□□□□ -0.28
USP4-204ENST00000416417 MKRN4PQ13434 485 aaPredicted RBP13.3□□□□□ -0.28
USP4-204ENST00000416417 PLEKHG4Q58EX7 1191 aa13.3□□□□□ -0.28
USP4-204ENST00000416417 TMTC3Q6ZXV5 915 aa13.3□□□□□ -0.28
USP4-204ENST00000416417 NLRX1Q86UT6 975 aa13.3□□□□□ -0.28
USP4-204ENST00000416417 FANCBQ8NB91 859 aa13.3□□□□□ -0.28
USP4-204ENST00000416417 TGS1Q96RS0 853 aaKnown RBP13.3□□□□□ -0.28
USP4-204ENST00000416417 LZTS2Q9BRK4 669 aa13.3□□□□□ -0.28
USP4-204ENST00000416417 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.29□□□□□ -0.28
USP4-204ENST00000416417 GSTTP1A0A1W2PQM5 241 aa13.29□□□□□ -0.28
USP4-204ENST00000416417 AMHP03971 560 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms