RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 TRIM39Q9HCM9 518 aa3.15□□□□□ -1.9
MCF2-204ENST00000414978 SPTLC3Q9NUV7 552 aa3.15□□□□□ -1.9
MCF2-204ENST00000414978 PCDHGB3Q9Y5G1 929 aa3.15□□□□□ -1.9
MCF2-204ENST00000414978 POLR3AO14802 1390 aaPredicted RBP3.15□□□□□ -1.9
MCF2-204ENST00000414978 KDM6AO15550 1401 aaPredicted RBP3.15□□□□□ -1.9
MCF2-204ENST00000414978 SPATA31E1Q6ZUB1 1445 aa3.15□□□□□ -1.9
MCF2-204ENST00000414978 YTHDC2Q9H6S0 1430 aaKnown RBP3.15□□□□□ -1.9
MCF2-204ENST00000414978 TRPM7Q96QT4 1865 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 WDR64B1ANS9 1081 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 GPR39O43194 453 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 RAB6AP20340 208 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 MAN1A1P33908 653 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 SOX18P35713 384 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 ADCYAP1R1P41586 468 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 TSPAN7P41732 249 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 TTLL4Q14679 1199 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 SLC15A2Q16348 729 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 GRAMD1BQ3KR37 738 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 CDC37L1Q7L3B6 337 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 EPM2AIP1Q7L775 607 aaPredicted RBP3.15□□□□□ -1.91
MCF2-204ENST00000414978 KRT28Q7Z3Y7 464 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 CDH24Q86UP0 819 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 CLIP3Q96DZ5 547 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 NAA15Q9BXJ9 866 aaKnown RBP3.15□□□□□ -1.91
MCF2-204ENST00000414978 SMOC1Q9H4F8 434 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 OBP2AQ9NY56 170 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 STK32BQ9NY57 414 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.15□□□□□ -1.91
MCF2-204ENST00000414978 DAGLAQ9Y4D2 1042 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 ZNF451Q9Y4E5 1061 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 TACC3Q9Y6A5 838 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 C4AP0C0L4 1744 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 C4BP0C0L5 1744 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 GFRA2O00451 464 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 TIMM44O43615 452 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 AP1G1O43747 822 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 ZNF862O60290 1169 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 RNASEH2AO75792 299 aaKnown RBP3.15□□□□□ -1.91
MCF2-204ENST00000414978 PRKD3O94806 890 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 FAM157BP0CG42 384 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 LPOP22079 712 aaPredicted RBP3.15□□□□□ -1.91
MCF2-204ENST00000414978 PURAQ00577 322 aaKnown RBP3.15□□□□□ -1.91
MCF2-204ENST00000414978 LRRFIP1Q32MZ4 808 aaKnown RBP3.15□□□□□ -1.91
MCF2-204ENST00000414978 ATP13A4Q4VNC1 1196 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 GPATCH4Q5T3I0 446 aaKnown RBP3.15□□□□□ -1.91
MCF2-204ENST00000414978 VWA5B2Q8N398 1253 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 CAMKK1Q8N5S9 505 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 DPF3Q92784 378 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 ERP27Q96DN0 273 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 ZNF837Q96EG3 531 aaPredicted RBP3.15□□□□□ -1.91
MCF2-204ENST00000414978 DSCC1Q9BVC3 393 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 SLC6A14Q9UN76 642 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 SOX13Q9UN79 622 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 SLC4A7Q9Y6M7 1214 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 FRMPD2Q68DX3 1309 aaPredicted RBP3.15□□□□□ -1.91
MCF2-204ENST00000414978 NFAT5O94916 1531 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 ITGB4P16144 1822 aa3.15□□□□□ -1.91
MCF2-204ENST00000414978 N4BP2Q86UW6 1770 aaPredicted RBP3.14□□□□□ -1.91
MCF2-204ENST00000414978 PRR36Q9H6K5 1346 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 GOLGA6CA6NDK9 693 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 GOLGA6BA6NDN3 693 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 TM4SF5O14894 197 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 LRRN2O75325 713 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 GLRX3O76003 335 aaKnown RBP3.14□□□□□ -1.91
MCF2-204ENST00000414978 UBOX5O94941 541 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 GOLGA6DP0CG33 693 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 GLULP15104 373 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 CYP4F3Q08477 520 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 STK3Q13188 491 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 NECAB2Q7Z6G3 386 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 OR6P1Q8NGX9 317 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 TRERF1Q96PN7 1200 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 LPIN3Q9BQK8 851 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 CNNM2Q9H8M5 875 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 GOLGA6AQ9NYA3 693 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 TJP2Q9UDY2 1190 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 ANKRD34BA5PLL1 514 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 C2CD2LO14523 706 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 PMM2O15305 246 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 GAS7O60861 476 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 PPM1BO75688 479 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 TOMM70O94826 608 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 FKBP9O95302 570 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 CYP11A1P05108 521 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 MCCP23508 829 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 DDB1Q16531 1140 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 ZNF800Q2TB10 664 aaPredicted RBP eCLIP3.14□□□□□ -1.91
MCF2-204ENST00000414978 SYDE2Q5VT97 1194 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 XRRA1Q6P2D8 792 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 FKBP9P1Q75LS8 142 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 CCDC155Q8N6L0 562 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 C1orf131Q8NDD1 294 aaKnown RBP3.14□□□□□ -1.91
MCF2-204ENST00000414978 GSTCDQ8NEC7 633 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 PJA1Q8NG27 643 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 AHCYL2Q96HN2 611 aaKnown RBP3.14□□□□□ -1.91
MCF2-204ENST00000414978 SUSD2Q9UGT4 822 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 ZNF112Q9UJU3 913 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 ZNF214Q9UL59 606 aaPredicted RBP3.14□□□□□ -1.91
MCF2-204ENST00000414978 DMTF1Q9Y222 760 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 NSD3Q9BZ95 1437 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 134.1 ms