RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 SP4Q02446 784 aa16.94■□□□□ 0.3
LIMS4-201ENST00000413601 SSRP1Q08945 709 aaKnown RBP16.94■□□□□ 0.3
LIMS4-201ENST00000413601 AP3B2Q13367 1082 aa16.94■□□□□ 0.3
LIMS4-201ENST00000413601 PPIGQ13427 754 aaKnown RBP eCLIP16.94■□□□□ 0.3
LIMS4-201ENST00000413601 MTMR1Q13613 665 aa16.94■□□□□ 0.3
LIMS4-201ENST00000413601 PTGISQ16647 500 aa16.94■□□□□ 0.3
LIMS4-201ENST00000413601 GDF6Q6KF10 455 aaPredicted RBP16.94■□□□□ 0.3
LIMS4-201ENST00000413601 C16orf59Q7L2K0 433 aa16.94■□□□□ 0.3
LIMS4-201ENST00000413601 C7orf31Q8N865 590 aa16.94■□□□□ 0.3
LIMS4-201ENST00000413601 IL17RAQ96F46 866 aa16.94■□□□□ 0.3
LIMS4-201ENST00000413601 C16orf70Q9BSU1 422 aa16.94■□□□□ 0.3
LIMS4-201ENST00000413601 C6orf50Q9HD87 102 aa16.94■□□□□ 0.3
LIMS4-201ENST00000413601 JADE2Q9NQC1 790 aa16.94■□□□□ 0.3
LIMS4-201ENST00000413601 PKD2L1Q9P0L9 805 aa16.94■□□□□ 0.3
LIMS4-201ENST00000413601 VPS54Q9P1Q0 977 aa16.94■□□□□ 0.3
LIMS4-201ENST00000413601 HDAC6Q9UBN7 1215 aa16.94■□□□□ 0.3
LIMS4-201ENST00000413601 TPCN1Q9ULQ1 816 aa16.94■□□□□ 0.3
LIMS4-201ENST00000413601 ACRP10323 421 aa16.93■□□□□ 0.3
LIMS4-201ENST00000413601 KCNA2P16389 499 aa16.93■□□□□ 0.3
LIMS4-201ENST00000413601 AK2P54819 239 aa16.93■□□□□ 0.3
LIMS4-201ENST00000413601 SESTD1Q86VW0 696 aa16.93■□□□□ 0.3
LIMS4-201ENST00000413601 TRIM22Q8IYM9 498 aa16.93■□□□□ 0.3
LIMS4-201ENST00000413601 GIMAP8Q8ND71 665 aaPredicted RBP16.93■□□□□ 0.3
LIMS4-201ENST00000413601 CYP2W1Q8TAV3 490 aa16.93■□□□□ 0.3
LIMS4-201ENST00000413601 CDHR1Q96JP9 859 aa16.93■□□□□ 0.3
LIMS4-201ENST00000413601 GPR20Q99678 358 aa16.93■□□□□ 0.3
LIMS4-201ENST00000413601 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.93■□□□□ 0.3
LIMS4-201ENST00000413601 MXRA8Q9BRK3 442 aa16.93■□□□□ 0.3
LIMS4-201ENST00000413601 WNT8AQ9H1J5 351 aa16.93■□□□□ 0.3
LIMS4-201ENST00000413601 SLKQ9H2G2 1235 aaPredicted RBP16.93■□□□□ 0.3
LIMS4-201ENST00000413601 NOD1Q9Y239 953 aa16.93■□□□□ 0.3
LIMS4-201ENST00000413601 GBF1Q92538 1859 aa16.93■□□□□ 0.3
LIMS4-201ENST00000413601 WDR81Q562E7 1941 aa16.92■□□□□ 0.3
LIMS4-201ENST00000413601 H3BRB1 525 aa16.92■□□□□ 0.3
LIMS4-201ENST00000413601 LGALS2P05162 132 aa16.92■□□□□ 0.3
LIMS4-201ENST00000413601 GNA11P29992 359 aa16.92■□□□□ 0.3
LIMS4-201ENST00000413601 SREBF1P36956 1147 aa16.92■□□□□ 0.3
LIMS4-201ENST00000413601 C1QBPQ07021 282 aaKnown RBP16.92■□□□□ 0.3
LIMS4-201ENST00000413601 SCRN1Q12765 414 aa16.92■□□□□ 0.3
LIMS4-201ENST00000413601 C8orf34Q49A92 452 aa16.92■□□□□ 0.3
LIMS4-201ENST00000413601 REXO1Q8N1G1 1221 aaKnown RBP16.92■□□□□ 0.3
LIMS4-201ENST00000413601 CCDC148Q8NFR7 591 aa16.92■□□□□ 0.3
LIMS4-201ENST00000413601 SCLYQ96I15 445 aa16.92■□□□□ 0.3
LIMS4-201ENST00000413601 RNPC3Q96LT9 517 aaKnown RBP16.92■□□□□ 0.3
LIMS4-201ENST00000413601 CTAGE1Q96RT6 745 aa16.92■□□□□ 0.3
LIMS4-201ENST00000413601 TUT1Q9H6E5 874 aaKnown RBP16.92■□□□□ 0.3
LIMS4-201ENST00000413601 KCNH7Q9NS40 1196 aa16.92■□□□□ 0.3
LIMS4-201ENST00000413601 GTF2IRD1Q9UHL9 959 aa16.92■□□□□ 0.3
LIMS4-201ENST00000413601 MAFGO15525 162 aa16.91■□□□□ 0.3
LIMS4-201ENST00000413601 PFKFB2O60825 505 aa16.91■□□□□ 0.3
LIMS4-201ENST00000413601 DEXIO95424 95 aa16.91■□□□□ 0.3
LIMS4-201ENST00000413601 ZNF76P36508 570 aa16.91■□□□□ 0.3
LIMS4-201ENST00000413601 NEK4P51957 841 aa16.91■□□□□ 0.3
LIMS4-201ENST00000413601 ARHGAP4P98171 946 aa16.91■□□□□ 0.3
LIMS4-201ENST00000413601 ANKRD1Q15327 319 aa16.91■□□□□ 0.3
LIMS4-201ENST00000413601 CEP55Q53EZ4 464 aa16.91■□□□□ 0.3
LIMS4-201ENST00000413601 TMEM240Q5SV17 173 aa16.91■□□□□ 0.3
LIMS4-201ENST00000413601 UTP14CQ5TAP6 766 aaKnown RBP16.91■□□□□ 0.3
LIMS4-201ENST00000413601 CPLX2Q6PUV4 134 aaKnown RBP16.91■□□□□ 0.3
LIMS4-201ENST00000413601 ZNF365Q70YC5 407 aa16.91■□□□□ 0.3
LIMS4-201ENST00000413601 RASGRP4Q8TDF6 673 aa16.91■□□□□ 0.3
LIMS4-201ENST00000413601 IL23AQ9NPF7 189 aa16.91■□□□□ 0.3
LIMS4-201ENST00000413601 SH3GLB2Q9NR46 395 aa16.91■□□□□ 0.3
LIMS4-201ENST00000413601 DTNBO60941 627 aa16.9■□□□□ 0.3
LIMS4-201ENST00000413601 ARP10275 920 aa16.9■□□□□ 0.3
LIMS4-201ENST00000413601 ZNF200P98182 395 aaPredicted RBP16.9■□□□□ 0.3
LIMS4-201ENST00000413601 HIC1Q14526 733 aa16.9■□□□□ 0.3
LIMS4-201ENST00000413601 MCTP2Q6DN12 878 aa16.9■□□□□ 0.3
LIMS4-201ENST00000413601 TRIM50Q86XT4 487 aa16.9■□□□□ 0.3
LIMS4-201ENST00000413601 BICD2Q8TD16 824 aa16.9■□□□□ 0.3
LIMS4-201ENST00000413601 AIFM3Q96NN9 605 aa16.9■□□□□ 0.3
LIMS4-201ENST00000413601 TET1Q8NFU7 2136 aa16.9■□□□□ 0.3
LIMS4-201ENST00000413601 LAMA3Q16787 3333 aa16.9■□□□□ 0.3
LIMS4-201ENST00000413601 MYH9P35579 1960 aaKnown RBP16.89■□□□□ 0.3
LIMS4-201ENST00000413601 GSTTP1A0A1W2PQM5 241 aa16.89■□□□□ 0.29
LIMS4-201ENST00000413601 FAM86B1E9PN63 330 aa16.89■□□□□ 0.29
LIMS4-201ENST00000413601 MEIS1O00470 390 aa16.89■□□□□ 0.29
LIMS4-201ENST00000413601 FAM86B2P0C5J1 330 aa16.89■□□□□ 0.29
LIMS4-201ENST00000413601 TCF7P36402 384 aaPredicted RBP16.89■□□□□ 0.29
LIMS4-201ENST00000413601 NLRP5P59047 1200 aa16.89■□□□□ 0.29
LIMS4-201ENST00000413601 BFSP2Q13515 415 aa16.89■□□□□ 0.29
LIMS4-201ENST00000413601 RETREG2Q8NC44 543 aa16.89■□□□□ 0.29
LIMS4-201ENST00000413601 CRYGNQ8WXF5 182 aa16.89■□□□□ 0.29
LIMS4-201ENST00000413601 DHX38Q92620 1227 aaKnown RBP16.89■□□□□ 0.29
LIMS4-201ENST00000413601 SZT2Q5T011 3432 aa16.89■□□□□ 0.29
LIMS4-201ENST00000413601 PITPNM1O00562 1244 aa16.88■□□□□ 0.29
LIMS4-201ENST00000413601 CDKL5O76039 1030 aa16.88■□□□□ 0.29
LIMS4-201ENST00000413601 LARGE1O95461 756 aa16.88■□□□□ 0.29
LIMS4-201ENST00000413601 FGBP02675 491 aa16.88■□□□□ 0.29
LIMS4-201ENST00000413601 CYP3A4P08684 503 aa16.88■□□□□ 0.29
LIMS4-201ENST00000413601 SMIM10L2AP0DMW4 78 aa16.88■□□□□ 0.29
LIMS4-201ENST00000413601 SMIM10L2BP0DMW5 78 aa16.88■□□□□ 0.29
LIMS4-201ENST00000413601 GPR153Q6NV75 609 aa16.88■□□□□ 0.29
LIMS4-201ENST00000413601 PSRC1Q6PGN9 363 aaPredicted RBP16.88■□□□□ 0.29
LIMS4-201ENST00000413601 DEFB128Q7Z7B8 93 aa16.88■□□□□ 0.29
LIMS4-201ENST00000413601 PLA2G4DQ86XP0 818 aa16.88■□□□□ 0.29
LIMS4-201ENST00000413601 RPUSD2Q8IZ73 545 aaKnown RBP16.88■□□□□ 0.29
LIMS4-201ENST00000413601 NECAB1Q8N987 351 aa16.88■□□□□ 0.29
LIMS4-201ENST00000413601 SEPT1Q8WYJ6 367 aa16.88■□□□□ 0.29
LIMS4-201ENST00000413601 VWCEQ96DN2 955 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms