RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 GPNMBQ14956 572 aa21.85■■□□□ 1.09
SF3A1-202ENST00000411423 TRIM50Q86XT4 487 aa21.85■■□□□ 1.09
SF3A1-202ENST00000411423 GPRASP2Q96D09 838 aa21.85■■□□□ 1.09
SF3A1-202ENST00000411423 FAM161BQ96MY7 647 aa21.85■■□□□ 1.09
SF3A1-202ENST00000411423 ANO3Q9BYT9 981 aa21.85■■□□□ 1.09
SF3A1-202ENST00000411423 CYP46A1Q9Y6A2 500 aa21.85■■□□□ 1.09
SF3A1-202ENST00000411423 TANC1Q9C0D5 1861 aa21.85■■□□□ 1.09
SF3A1-202ENST00000411423 CCDC196A0A1B0GTZ2 297 aa21.84■■□□□ 1.09
SF3A1-202ENST00000411423 hCG_1984214I3L0E3 225 aa21.84■■□□□ 1.09
SF3A1-202ENST00000411423 SEC24BO95487 1268 aa21.84■■□□□ 1.09
SF3A1-202ENST00000411423 SP4Q02446 784 aa21.84■■□□□ 1.09
SF3A1-202ENST00000411423 NLRX1Q86UT6 975 aa21.84■■□□□ 1.09
SF3A1-202ENST00000411423 ZNF713Q8N859 430 aaPredicted RBP21.84■■□□□ 1.09
SF3A1-202ENST00000411423 SENP7Q9BQF6 1050 aa21.84■■□□□ 1.09
SF3A1-202ENST00000411423 TTYH1Q9H313 450 aaPredicted RBP21.84■■□□□ 1.09
SF3A1-202ENST00000411423 JADE2Q9NQC1 790 aa21.84■■□□□ 1.09
SF3A1-202ENST00000411423 PKD2L1Q9P0L9 805 aa21.84■■□□□ 1.09
SF3A1-202ENST00000411423 CDH23Q9H251 3354 aa21.84■■□□□ 1.09
SF3A1-202ENST00000411423 IQCF3P0C7M6 154 aa21.83■■□□□ 1.09
SF3A1-202ENST00000411423 TRIM71Q2Q1W2 868 aaKnown RBP21.83■■□□□ 1.09
SF3A1-202ENST00000411423 PSRC1Q6PGN9 363 aaPredicted RBP21.83■■□□□ 1.09
SF3A1-202ENST00000411423 OTOP2Q7RTS6 562 aa21.83■■□□□ 1.09
SF3A1-202ENST00000411423 C7orf31Q8N865 590 aa21.83■■□□□ 1.09
SF3A1-202ENST00000411423 HERVK_113Q902F9 699 aa21.83■■□□□ 1.09
SF3A1-202ENST00000411423 GUCD1Q96NT3 240 aa21.83■■□□□ 1.09
SF3A1-202ENST00000411423 KATNAL1Q9BW62 490 aa21.83■■□□□ 1.09
SF3A1-202ENST00000411423 DTNBO60941 627 aa21.82■■□□□ 1.08
SF3A1-202ENST00000411423 FGBP02675 491 aa21.82■■□□□ 1.08
SF3A1-202ENST00000411423 IFNAR1P17181 557 aa21.82■■□□□ 1.08
SF3A1-202ENST00000411423 PBX2P40425 430 aa21.82■■□□□ 1.08
SF3A1-202ENST00000411423 MTMR1Q13613 665 aa21.82■■□□□ 1.08
SF3A1-202ENST00000411423 JAKMIP3Q5VZ66 844 aa21.82■■□□□ 1.08
SF3A1-202ENST00000411423 DEFB128Q7Z7B8 93 aa21.82■■□□□ 1.08
SF3A1-202ENST00000411423 MXRA8Q9BRK3 442 aa21.82■■□□□ 1.08
SF3A1-202ENST00000411423 SLC26A6Q9BXS9 759 aa21.82■■□□□ 1.08
SF3A1-202ENST00000411423 PDRG1Q9NUG6 133 aa21.82■■□□□ 1.08
SF3A1-202ENST00000411423 NOD1Q9Y239 953 aa21.82■■□□□ 1.08
SF3A1-202ENST00000411423 GSTTP1A0A1W2PQM5 241 aa21.81■■□□□ 1.08
SF3A1-202ENST00000411423 H3BRB1 525 aa21.81■■□□□ 1.08
SF3A1-202ENST00000411423 PITPNM1O00562 1244 aa21.81■■□□□ 1.08
SF3A1-202ENST00000411423 NOP56O00567 594 aaKnown RBP21.81■■□□□ 1.08
SF3A1-202ENST00000411423 ARP10275 920 aa21.81■■□□□ 1.08
SF3A1-202ENST00000411423 HOXC8P31273 242 aa21.81■■□□□ 1.08
SF3A1-202ENST00000411423 STK3Q13188 491 aa21.81■■□□□ 1.08
SF3A1-202ENST00000411423 UTP14CQ5TAP6 766 aaKnown RBP21.81■■□□□ 1.08
SF3A1-202ENST00000411423 TRAF7Q6Q0C0 670 aa21.81■■□□□ 1.08
SF3A1-202ENST00000411423 CRYGNQ8WXF5 182 aa21.81■■□□□ 1.08
SF3A1-202ENST00000411423 RNF26Q9BY78 433 aaPredicted RBP21.81■■□□□ 1.08
SF3A1-202ENST00000411423 ZMYND12Q9H0C1 365 aa21.81■■□□□ 1.08
SF3A1-202ENST00000411423 TUT1Q9H6E5 874 aaKnown RBP21.81■■□□□ 1.08
SF3A1-202ENST00000411423 TRIP12Q14669 1992 aaPredicted RBP21.81■■□□□ 1.08
SF3A1-202ENST00000411423 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.8■■□□□ 1.08
SF3A1-202ENST00000411423 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.8■■□□□ 1.08
SF3A1-202ENST00000411423 ESYT2A0FGR8 921 aa21.8■■□□□ 1.08
SF3A1-202ENST00000411423 SMIM10L2AP0DMW4 78 aa21.8■■□□□ 1.08
SF3A1-202ENST00000411423 SMIM10L2BP0DMW5 78 aa21.8■■□□□ 1.08
SF3A1-202ENST00000411423 SREBF1P36956 1147 aa21.8■■□□□ 1.08
SF3A1-202ENST00000411423 RBL2Q08999 1139 aa21.8■■□□□ 1.08
SF3A1-202ENST00000411423 TCTN1Q2MV58 587 aa21.8■■□□□ 1.08
SF3A1-202ENST00000411423 RASGRP4Q8TDF6 673 aa21.8■■□□□ 1.08
SF3A1-202ENST00000411423 ZNF274Q96GC6 653 aaPredicted RBP21.8■■□□□ 1.08
SF3A1-202ENST00000411423 VPS54Q9P1Q0 977 aa21.8■■□□□ 1.08
SF3A1-202ENST00000411423 EDIL3O43854 480 aa21.79■■□□□ 1.08
SF3A1-202ENST00000411423 FOSP01100 380 aaPredicted RBP21.79■■□□□ 1.08
SF3A1-202ENST00000411423 CKBP12277 381 aa21.79■■□□□ 1.08
SF3A1-202ENST00000411423 AP3B2Q13367 1082 aa21.79■■□□□ 1.08
SF3A1-202ENST00000411423 SEMA6BQ9H3T3 888 aa21.79■■□□□ 1.08
SF3A1-202ENST00000411423 RNPEPQ9H4A4 650 aa21.79■■□□□ 1.08
SF3A1-202ENST00000411423 KCNH7Q9NS40 1196 aa21.79■■□□□ 1.08
SF3A1-202ENST00000411423 EYSQ5T1H1 3165 aa21.79■■□□□ 1.08
SF3A1-202ENST00000411423 TET1Q8NFU7 2136 aa21.79■■□□□ 1.08
SF3A1-202ENST00000411423 FAM86B1E9PN63 330 aa21.78■■□□□ 1.08
SF3A1-202ENST00000411423 FAM86B2P0C5J1 330 aa21.78■■□□□ 1.08
SF3A1-202ENST00000411423 DNAJB2P25686 324 aa21.78■■□□□ 1.08
SF3A1-202ENST00000411423 TCF7P36402 384 aaPredicted RBP21.78■■□□□ 1.08
SF3A1-202ENST00000411423 ARHGAP4P98171 946 aa21.78■■□□□ 1.08
SF3A1-202ENST00000411423 PTK7Q13308 1070 aa21.78■■□□□ 1.08
SF3A1-202ENST00000411423 ITGB3BPQ13352 177 aaPredicted RBP21.78■■□□□ 1.08
SF3A1-202ENST00000411423 BFSP2Q13515 415 aa21.78■■□□□ 1.08
SF3A1-202ENST00000411423 ZNF697Q5TEC3 545 aa21.78■■□□□ 1.08
SF3A1-202ENST00000411423 RPUSD2Q8IZ73 545 aaKnown RBP21.78■■□□□ 1.08
SF3A1-202ENST00000411423 RETREG2Q8NC44 543 aa21.78■■□□□ 1.08
SF3A1-202ENST00000411423 CAGE1Q8TC20 777 aa21.78■■□□□ 1.08
SF3A1-202ENST00000411423 CDHR1Q96JP9 859 aa21.78■■□□□ 1.08
SF3A1-202ENST00000411423 AIFM3Q96NN9 605 aa21.78■■□□□ 1.08
SF3A1-202ENST00000411423 PCYT2Q99447 389 aa21.78■■□□□ 1.08
SF3A1-202ENST00000411423 PBX4Q9BYU1 374 aa21.78■■□□□ 1.08
SF3A1-202ENST00000411423 EHMT1Q9H9B1 1298 aa21.78■■□□□ 1.08
SF3A1-202ENST00000411423 TPCN1Q9ULQ1 816 aa21.78■■□□□ 1.08
SF3A1-202ENST00000411423 CHD9Q3L8U1 2897 aa21.78■■□□□ 1.08
SF3A1-202ENST00000411423 MEIS1O00470 390 aa21.77■■□□□ 1.08
SF3A1-202ENST00000411423 TREHO43280 583 aa21.77■■□□□ 1.08
SF3A1-202ENST00000411423 NBNO60934 754 aa21.77■■□□□ 1.08
SF3A1-202ENST00000411423 SCRN1Q12765 414 aa21.77■■□□□ 1.08
SF3A1-202ENST00000411423 MBTPS1Q14703 1052 aa21.77■■□□□ 1.08
SF3A1-202ENST00000411423 CEP55Q53EZ4 464 aa21.77■■□□□ 1.08
SF3A1-202ENST00000411423 LRRC8DQ7L1W4 858 aa21.77■■□□□ 1.08
SF3A1-202ENST00000411423 TEX2Q8IWB9 1127 aa21.77■■□□□ 1.08
SF3A1-202ENST00000411423 IL17RAQ96F46 866 aa21.77■■□□□ 1.08
SF3A1-202ENST00000411423 UIMC1Q96RL1 719 aa21.77■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms