RNA–Protein interactions for RNA: ENST00000410828.1

RNU4-53P-201, Transcript of RNA, U4 small nuclear 53, pseudogene, humanhuman

BASIC

Gene RNU4-53P, Length 140 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-53P-201ENST00000410828 USP15Q9Y4E8 981 aaPredicted RBP2.78□□□□□ -1.96
RNU4-53P-201ENST00000410828 MRVI1Q9Y6F6 885 aa2.78□□□□□ -1.96
RNU4-53P-201ENST00000410828 REV3LO60673 3130 aa2.78□□□□□ -1.96
RNU4-53P-201ENST00000410828 GBF1Q92538 1859 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 TRIOO75962 3097 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 FRMPD2Q68DX3 1309 aaPredicted RBP2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 C5orf42Q9H799 3197 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 SCN5AQ14524 2016 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 MED19A0JLT2 244 aaPredicted RBP2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 H3BRB1 525 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 ENPP3O14638 875 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 RNF113AO15541 343 aaKnown RBP2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 TREHO43280 583 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 DGKIO75912 1065 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 RGS20O76081 388 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 PDGFBP01127 241 aaPredicted RBP2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 ITGB1P05556 798 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 CTSHP09668 335 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 STAG3L1P0CL83 205 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 SRGAP2BP0DMP2 458 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 SMIM10L2AP0DMW4 78 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 SMIM10L2BP0DMW5 78 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 TGFB3P10600 412 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 HSPD1P10809 573 aaKnown RBP2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 GHRP10912 638 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 PDHBP11177 359 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 TOP1P11387 765 aaKnown RBP2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 MS4A1P11836 297 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 HOXB8P17481 243 aaPredicted RBP2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 EIF2AK2P19525 551 aaKnown RBP2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 HOXC8P31273 242 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 NOVP48745 357 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 UBE3AQ05086 875 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 CTDSPL2Q05D32 466 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 ZNF543Q08ER8 600 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 MTMR3Q13615 1198 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 CAMK1Q14012 370 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 HIC1Q14526 733 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 PUM1Q14671 1186 aaKnown RBP eCLIP2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 HSDL1Q3SXM5 330 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 USH1GQ495M9 461 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 FAM26DQ5JW98 314 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 CELF3Q5SZQ8 465 aaKnown RBP2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 GPATCH4Q5T3I0 446 aaKnown RBP2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 MYSM1Q5VVJ2 828 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 ASTLQ6HA08 431 aaPredicted RBP2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 TAF2Q6P1X5 1199 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 RASGRP2Q7LDG7 609 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 FRMD5Q7Z6J6 570 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 ADGRD2Q7Z7M1 963 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 RSPH3Q86UC2 560 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 CMTR2Q8IYT2 770 aaKnown RBP2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 TMEM105Q8N8V8 129 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 KLHL23Q8NBE8 558 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 KREMEN2Q8NCW0 462 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 SPPL3Q8TCT6 385 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 KCNG4Q8TDN1 519 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 ATP8B4Q8TF62 1192 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 POF1BQ8WVV4 589 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 SUSD6Q92537 303 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 RMDN1Q96DB5 314 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 GPATCH3Q96I76 525 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 TTC14Q96N46 770 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 NEK1Q96PY6 1258 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 TAAR1Q96RJ0 339 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 CDCA3Q99618 268 aaPredicted RBP2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 TMEM47Q9BQJ4 181 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 C16orf70Q9BSU1 422 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 USP26Q9BXU7 913 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 LRRCC1Q9C099 1032 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 SEMA4AQ9H3S1 761 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 MFSD1Q9H3U5 465 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 CHMP4BQ9H444 224 aaKnown RBP2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 RNPEPQ9H4A4 650 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 TUT1Q9H6E5 874 aaKnown RBP2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 TLE6Q9H808 572 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 MLXIPQ9HAP2 919 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 IL17RBQ9NRM6 502 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 TOMM22Q9NS69 142 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 SETD4Q9NVD3 440 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 ZNF215Q9UL58 517 aaPredicted RBP2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 BARX2Q9UMQ3 279 aaPredicted RBP2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 DDX52Q9Y2R4 599 aaKnown RBP eCLIP2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 NR2E1Q9Y466 385 aa2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 TRIP12Q14669 1992 aaPredicted RBP2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 COL11A1P12107 1806 aaPredicted RBP2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 MAP1BP46821 2468 aaKnown RBP2.77□□□□□ -1.97
RNU4-53P-201ENST00000410828 ABCB11O95342 1321 aa2.76□□□□□ -1.97
RNU4-53P-201ENST00000410828 NRCAMQ92823 1304 aa2.76□□□□□ -1.97
RNU4-53P-201ENST00000410828 NAV1Q8NEY1 1877 aa2.76□□□□□ -1.97
RNU4-53P-201ENST00000410828 RBAK-RBAKDNI3L0D1 243 aa2.76□□□□□ -1.97
RNU4-53P-201ENST00000410828 M0R2C6 588 aa2.76□□□□□ -1.97
RNU4-53P-201ENST00000410828 NOP56O00567 594 aaKnown RBP2.76□□□□□ -1.97
RNU4-53P-201ENST00000410828 PER2O15055 1255 aa2.76□□□□□ -1.97
RNU4-53P-201ENST00000410828 ORC4O43929 436 aa2.76□□□□□ -1.97
RNU4-53P-201ENST00000410828 DHX16O60231 1041 aaKnown RBP2.76□□□□□ -1.97
RNU4-53P-201ENST00000410828 SORBS3O60504 671 aa2.76□□□□□ -1.97
RNU4-53P-201ENST00000410828 PPFIA3O75145 1194 aa2.76□□□□□ -1.97
RNU4-53P-201ENST00000410828 KRT37O76014 449 aa2.76□□□□□ -1.97
RNU4-53P-201ENST00000410828 BRD1O95696 1058 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms