RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 TNPO2O14787 897 aaKnown RBP10.01□□□□□ -0.81
LIG4-202ENST00000405925 FOXN1O15353 648 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 PRPF6O94906 941 aaKnown RBP10.01□□□□□ -0.81
LIG4-202ENST00000405925 NR3C2P08235 984 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 CCNE1P24864 410 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 COPB1P53618 953 aaKnown RBP10.01□□□□□ -0.81
LIG4-202ENST00000405925 KLHL30Q0D2K2 578 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 ZNF569Q5MCW4 686 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 CLEC17AQ6ZS10 378 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 FMNL3Q8IVF7 1028 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 C17orf53Q8N3J3 647 aaPredicted RBP10.01□□□□□ -0.81
LIG4-202ENST00000405925 RETREG2Q8NC44 543 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 TMEM60Q9H2L4 133 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 RGL1Q9NZL6 768 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.01□□□□□ -0.81
LIG4-202ENST00000405925 ESYT2A0FGR8 921 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 PEX3P56589 373 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 EVCP57679 992 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 RPS6P62753 249 aaKnown RBP10.01□□□□□ -0.81
LIG4-202ENST00000405925 COL9A3Q14050 684 aaPredicted RBP10.01□□□□□ -0.81
LIG4-202ENST00000405925 FKBP1CQ5VVH2 108 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 MRIQ9BWK5 157 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 GBP3Q9H0R5 595 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 PCIF1Q9H4Z3 704 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 GABBR1Q9UBS5 961 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 ZNF215Q9UL58 517 aaPredicted RBP10.01□□□□□ -0.81
LIG4-202ENST00000405925 RGPD1P0DJD0 1748 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 IKBKBO14920 756 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 VCAM1P19320 739 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 QARSP47897 775 aaKnown RBP10.01□□□□□ -0.81
LIG4-202ENST00000405925 CDR1P51861 262 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 TFDP1Q14186 410 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 NEDD9Q14511 834 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 SWSAP1Q6NVH7 229 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 CYP26C1Q6V0L0 522 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 NLRP4Q96MN2 994 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 SH2D3AQ9BRG2 576 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 LXNQ9BS40 222 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 NBPF3Q9H094 633 aa10.01□□□□□ -0.81
LIG4-202ENST00000405925 FAM49AQ9H0Q0 323 aaPredicted RBP10.01□□□□□ -0.81
LIG4-202ENST00000405925 YDJCA8MPS7 323 aa10□□□□□ -0.81
LIG4-202ENST00000405925 PRR29P0C7W0 189 aa10□□□□□ -0.81
LIG4-202ENST00000405925 SRGAP2CP0DJJ0 459 aa10□□□□□ -0.81
LIG4-202ENST00000405925 COPB2P35606 906 aa10□□□□□ -0.81
LIG4-202ENST00000405925 ST3GAL1Q11201 340 aa10□□□□□ -0.81
LIG4-202ENST00000405925 PADI6Q6TGC4 694 aa10□□□□□ -0.81
LIG4-202ENST00000405925 SYT10Q6XYQ8 523 aa10□□□□□ -0.81
LIG4-202ENST00000405925 TMTC1Q8IUR5 882 aa10□□□□□ -0.81
LIG4-202ENST00000405925 TTC16Q8NEE8 873 aa10□□□□□ -0.81
LIG4-202ENST00000405925 ENOX1Q8TC92 643 aaKnown RBP10□□□□□ -0.81
LIG4-202ENST00000405925 KIFAP3Q92845 792 aa10□□□□□ -0.81
LIG4-202ENST00000405925 GMCL1Q96IK5 515 aa10□□□□□ -0.81
LIG4-202ENST00000405925 CENPHQ9H3R5 247 aa10□□□□□ -0.81
LIG4-202ENST00000405925 LTBP4Q8N2S1 1624 aa10□□□□□ -0.81
LIG4-202ENST00000405925 ARHGAP6O43182 974 aa10□□□□□ -0.81
LIG4-202ENST00000405925 STX10O60499 249 aa10□□□□□ -0.81
LIG4-202ENST00000405925 P4HBP07237 508 aaKnown RBP10□□□□□ -0.81
LIG4-202ENST00000405925 BCRP11274 1271 aa10□□□□□ -0.81
LIG4-202ENST00000405925 ATP1A3P13637 1013 aa10□□□□□ -0.81
LIG4-202ENST00000405925 TTLL4Q14679 1199 aa10□□□□□ -0.81
LIG4-202ENST00000405925 AXDND1Q5T1B0 1012 aaPredicted RBP10□□□□□ -0.81
LIG4-202ENST00000405925 UNC13DQ70J99 1090 aa10□□□□□ -0.81
LIG4-202ENST00000405925 OR8K1Q8NGG5 319 aa10□□□□□ -0.81
LIG4-202ENST00000405925 MRFAP1L1Q96HT8 127 aa10□□□□□ -0.81
LIG4-202ENST00000405925 GBA2Q9HCG7 927 aaPredicted RBP10□□□□□ -0.81
LIG4-202ENST00000405925 STRCQ7RTU9 1775 aa10□□□□□ -0.81
LIG4-202ENST00000405925 PRPHP41219 470 aa10□□□□□ -0.81
LIG4-202ENST00000405925 MAGEA1P43355 309 aa10□□□□□ -0.81
LIG4-202ENST00000405925 FAM193AP78312 1265 aa10□□□□□ -0.81
LIG4-202ENST00000405925 TYW1BQ6NUM6 668 aa10□□□□□ -0.81
LIG4-202ENST00000405925 GBP6Q6ZN66 633 aa10□□□□□ -0.81
LIG4-202ENST00000405925 SFR1Q86XK3 245 aa10□□□□□ -0.81
LIG4-202ENST00000405925 FAM186BQ8IYM0 893 aa10□□□□□ -0.81
LIG4-202ENST00000405925 HACE1Q8IYU2 909 aa10□□□□□ -0.81
LIG4-202ENST00000405925 PPM1KQ8N3J5 372 aa10□□□□□ -0.81
LIG4-202ENST00000405925 ACCSQ96QU6 501 aa10□□□□□ -0.81
LIG4-202ENST00000405925 EIF2AK1Q9BQI3 630 aaKnown RBP10□□□□□ -0.81
LIG4-202ENST00000405925 APOL6Q9BWW8 343 aa10□□□□□ -0.81
LIG4-202ENST00000405925 PPP2R3BQ9Y5P8 575 aa10□□□□□ -0.81
LIG4-202ENST00000405925 CETPP11597 493 aa9.99□□□□□ -0.81
LIG4-202ENST00000405925 RAD54LQ92698 747 aa9.99□□□□□ -0.81
LIG4-202ENST00000405925 PARK7Q99497 189 aaKnown RBP9.99□□□□□ -0.81
LIG4-202ENST00000405925 PLVAPQ9BX97 442 aa9.99□□□□□ -0.81
LIG4-202ENST00000405925 CTAGE9A4FU28 777 aa9.99□□□□□ -0.81
LIG4-202ENST00000405925 TMEM191BP0C7N4 346 aa9.99□□□□□ -0.81
LIG4-202ENST00000405925 TAL1P17542 331 aaPredicted RBP9.99□□□□□ -0.81
LIG4-202ENST00000405925 SFNP31947 248 aa9.99□□□□□ -0.81
LIG4-202ENST00000405925 HLTFQ14527 1009 aaKnown RBP eCLIP9.99□□□□□ -0.81
LIG4-202ENST00000405925 SFMBT2Q5VUG0 894 aa9.99□□□□□ -0.81
LIG4-202ENST00000405925 MSANTD4Q8NCY6 345 aa9.99□□□□□ -0.81
LIG4-202ENST00000405925 UPF1Q92900 1129 aaKnown RBP eCLIP9.99□□□□□ -0.81
LIG4-202ENST00000405925 RRAGCQ9HB90 399 aa9.99□□□□□ -0.81
LIG4-202ENST00000405925 PCDHA10Q9Y5I2 948 aa9.99□□□□□ -0.81
LIG4-202ENST00000405925 K7ERI5 159 aa9.99□□□□□ -0.81
LIG4-202ENST00000405925 ICAM1P05362 532 aa9.99□□□□□ -0.81
LIG4-202ENST00000405925 POLR2FP61218 127 aaKnown RBP9.99□□□□□ -0.81
LIG4-202ENST00000405925 GRIN1Q05586 938 aa9.99□□□□□ -0.81
LIG4-202ENST00000405925 FBXL16Q8N461 479 aa9.99□□□□□ -0.81
LIG4-202ENST00000405925 MB21D1Q8N884 522 aa9.99□□□□□ -0.81
LIG4-202ENST00000405925 NEK9Q8TD19 979 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 116.5 ms