RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 NCAPH2Q6IBW4 605 aa20.36■□□□□ 0.85
SDC1-203ENST00000403076 TAPT1Q6NXT6 567 aa20.36■□□□□ 0.85
SDC1-203ENST00000403076 OTOP1Q7RTM1 612 aa20.36■□□□□ 0.85
SDC1-203ENST00000403076 GIMAP8Q8ND71 665 aaPredicted RBP20.36■□□□□ 0.85
SDC1-203ENST00000403076 TRIB2Q92519 343 aa20.36■□□□□ 0.85
SDC1-203ENST00000403076 SENP7Q9BQF6 1050 aa20.36■□□□□ 0.85
SDC1-203ENST00000403076 DDX41Q9UJV9 622 aaKnown RBP20.36■□□□□ 0.85
SDC1-203ENST00000403076 A0A1W2PQ27 194 aa20.35■□□□□ 0.85
SDC1-203ENST00000403076 A0A1W2PQ64 194 aa20.35■□□□□ 0.85
SDC1-203ENST00000403076 A0A1W2PQD8 194 aa20.35■□□□□ 0.85
SDC1-203ENST00000403076 POTEMA6NI47 508 aa20.35■□□□□ 0.85
SDC1-203ENST00000403076 ELNP15502 786 aa20.35■□□□□ 0.85
SDC1-203ENST00000403076 KCNA2P16389 499 aa20.35■□□□□ 0.85
SDC1-203ENST00000403076 SP2Q02086 613 aa20.35■□□□□ 0.85
SDC1-203ENST00000403076 LY6KQ17RY6 165 aa20.35■□□□□ 0.85
SDC1-203ENST00000403076 IGSF22Q8N9C0 903 aa20.35■□□□□ 0.85
SDC1-203ENST00000403076 FSIP1Q8NA03 581 aa20.35■□□□□ 0.85
SDC1-203ENST00000403076 AK8Q96MA6 479 aa20.35■□□□□ 0.85
SDC1-203ENST00000403076 KATNBL1Q9H079 304 aa20.35■□□□□ 0.85
SDC1-203ENST00000403076 FAM13BQ9NYF5 915 aa20.35■□□□□ 0.85
SDC1-203ENST00000403076 FOXN1O15353 648 aa20.34■□□□□ 0.85
SDC1-203ENST00000403076 DHX15O43143 795 aaKnown RBP20.34■□□□□ 0.85
SDC1-203ENST00000403076 ARIH2O95376 493 aa20.34■□□□□ 0.85
SDC1-203ENST00000403076 HSPA1AP0DMV8 641 aaKnown RBP20.34■□□□□ 0.85
SDC1-203ENST00000403076 HSPA1BP0DMV9 641 aaKnown RBP20.34■□□□□ 0.85
SDC1-203ENST00000403076 UBA1P22314 1058 aaKnown RBP20.34■□□□□ 0.85
SDC1-203ENST00000403076 CMA1P23946 247 aa20.34■□□□□ 0.85
SDC1-203ENST00000403076 TXLNAP40222 546 aa20.34■□□□□ 0.85
SDC1-203ENST00000403076 UBA7P41226 1012 aa20.34■□□□□ 0.85
SDC1-203ENST00000403076 ADCYAP1R1P41586 468 aa20.34■□□□□ 0.85
SDC1-203ENST00000403076 SP4Q02446 784 aa20.34■□□□□ 0.85
SDC1-203ENST00000403076 IQSEC1Q6DN90 963 aa20.34■□□□□ 0.85
SDC1-203ENST00000403076 SHC4Q6S5L8 630 aa20.34■□□□□ 0.85
SDC1-203ENST00000403076 CYFIP1Q7L576 1253 aa20.34■□□□□ 0.85
SDC1-203ENST00000403076 MRPS27Q92552 414 aaKnown RBP20.34■□□□□ 0.85
SDC1-203ENST00000403076 MLXIPQ9HAP2 919 aa20.34■□□□□ 0.85
SDC1-203ENST00000403076 VAV3Q9UKW4 847 aa20.34■□□□□ 0.85
SDC1-203ENST00000403076 KIAA1217Q5T5P2 1943 aa20.34■□□□□ 0.85
SDC1-203ENST00000403076 NFASCO94856 1347 aa20.34■□□□□ 0.85
SDC1-203ENST00000403076 LRRC37A2A6NM11 1700 aa20.34■□□□□ 0.85
SDC1-203ENST00000403076 RBM47A0AV96 593 aaKnown RBP20.33■□□□□ 0.85
SDC1-203ENST00000403076 PP2D1A8MPX8 630 aa20.33■□□□□ 0.85
SDC1-203ENST00000403076 GGPS1O95749 300 aa20.33■□□□□ 0.85
SDC1-203ENST00000403076 HSPA8P11142 646 aaKnown RBP20.33■□□□□ 0.85
SDC1-203ENST00000403076 CDC25AP30304 524 aa20.33■□□□□ 0.85
SDC1-203ENST00000403076 PPP2R5CQ13362 524 aa20.33■□□□□ 0.85
SDC1-203ENST00000403076 CCDC144BQ3MJ40 725 aa20.33■□□□□ 0.85
SDC1-203ENST00000403076 RESP18Q5W5W9 173 aa20.33■□□□□ 0.85
SDC1-203ENST00000403076 CCDC73Q6ZRK6 1079 aa20.33■□□□□ 0.85
SDC1-203ENST00000403076 MIER3Q7Z3K6 550 aa20.33■□□□□ 0.85
SDC1-203ENST00000403076 DHX37Q8IY37 1157 aaKnown RBP20.33■□□□□ 0.85
SDC1-203ENST00000403076 RASSF8Q8NHQ8 419 aa20.33■□□□□ 0.85
SDC1-203ENST00000403076 ERMNQ8TAM6 284 aa20.33■□□□□ 0.85
SDC1-203ENST00000403076 SYMPKQ92797 1274 aaKnown RBP20.33■□□□□ 0.85
SDC1-203ENST00000403076 EPSTI1Q96J88 318 aa20.33■□□□□ 0.85
SDC1-203ENST00000403076 UNC45AQ9H3U1 944 aa20.33■□□□□ 0.85
SDC1-203ENST00000403076 JPH1Q9HDC5 661 aaPredicted RBP20.33■□□□□ 0.85
SDC1-203ENST00000403076 SLC9A2Q9UBY0 812 aa20.33■□□□□ 0.85
SDC1-203ENST00000403076 SAMM50Q9Y512 469 aa20.33■□□□□ 0.85
SDC1-203ENST00000403076 A0A1B0GVL5 298 aa20.32■□□□□ 0.84
SDC1-203ENST00000403076 HMGCRP04035 888 aa20.32■□□□□ 0.84
SDC1-203ENST00000403076 CTCFP49711 727 aaPredicted RBP20.32■□□□□ 0.84
SDC1-203ENST00000403076 KRT76Q01546 638 aa20.32■□□□□ 0.84
SDC1-203ENST00000403076 ZRSR1Q15695 479 aaKnown RBP20.32■□□□□ 0.84
SDC1-203ENST00000403076 KRT79Q5XKE5 535 aa20.32■□□□□ 0.84
SDC1-203ENST00000403076 CCDC62Q6P9F0 684 aa20.32■□□□□ 0.84
SDC1-203ENST00000403076 BCAS3Q9H6U6 928 aa20.32■□□□□ 0.84
SDC1-203ENST00000403076 NRBP1Q9UHY1 535 aa20.32■□□□□ 0.84
SDC1-203ENST00000403076 IGHA2P01877 340 aa20.32■□□□□ 0.84
SDC1-203ENST00000403076 ZNF865P0CJ78 1059 aaPredicted RBP20.32■□□□□ 0.84
SDC1-203ENST00000403076 CNGA1P29973 690 aa20.32■□□□□ 0.84
SDC1-203ENST00000403076 TNFAIP2Q03169 654 aa20.32■□□□□ 0.84
SDC1-203ENST00000403076 SPIRE1Q08AE8 756 aa20.32■□□□□ 0.84
SDC1-203ENST00000403076 USP49Q70CQ1 688 aa20.32■□□□□ 0.84
SDC1-203ENST00000403076 CABP7Q86V35 215 aa20.32■□□□□ 0.84
SDC1-203ENST00000403076 PXYLP1Q8TE99 480 aa20.32■□□□□ 0.84
SDC1-203ENST00000403076 SNX29Q8TEQ0 813 aa20.32■□□□□ 0.84
SDC1-203ENST00000403076 COPS5Q92905 334 aa20.32■□□□□ 0.84
SDC1-203ENST00000403076 FAM184BQ9ULE4 1060 aa20.32■□□□□ 0.84
SDC1-203ENST00000403076 PTCH2Q9Y6C5 1203 aa20.32■□□□□ 0.84
SDC1-203ENST00000403076 STK24Q9Y6E0 443 aa20.32■□□□□ 0.84
SDC1-203ENST00000403076 CASP8AP2Q9UKL3 1982 aa20.31■□□□□ 0.84
SDC1-203ENST00000403076 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.31■□□□□ 0.84
SDC1-203ENST00000403076 GH1P01241 217 aa20.31■□□□□ 0.84
SDC1-203ENST00000403076 CCT6AP40227 531 aaKnown RBP20.31■□□□□ 0.84
SDC1-203ENST00000403076 JAK3P52333 1124 aa20.31■□□□□ 0.84
SDC1-203ENST00000403076 LBX1P52954 281 aa20.31■□□□□ 0.84
SDC1-203ENST00000403076 CACNB2Q08289 660 aaPredicted RBP20.31■□□□□ 0.84
SDC1-203ENST00000403076 TRIM32Q13049 653 aa20.31■□□□□ 0.84
SDC1-203ENST00000403076 CELF3Q5SZQ8 465 aaKnown RBP20.31■□□□□ 0.84
SDC1-203ENST00000403076 ZNF746Q6NUN9 644 aaPredicted RBP20.31■□□□□ 0.84
SDC1-203ENST00000403076 SLAIN1Q8ND83 568 aa20.31■□□□□ 0.84
SDC1-203ENST00000403076 CDK5RAP3Q96JB5 506 aa20.31■□□□□ 0.84
SDC1-203ENST00000403076 PANK2Q9BZ23 570 aa20.31■□□□□ 0.84
SDC1-203ENST00000403076 DISC1Q9NRI5 854 aa20.31■□□□□ 0.84
SDC1-203ENST00000403076 WDR64B1ANS9 1081 aa20.3■□□□□ 0.84
SDC1-203ENST00000403076 EML1O00423 815 aa20.3■□□□□ 0.84
SDC1-203ENST00000403076 NKRFO15226 690 aaKnown RBP eCLIP20.3■□□□□ 0.844e-6■■□□□ 11.7
SDC1-203ENST00000403076 PFKFB1P16118 471 aa20.3■□□□□ 0.84
SDC1-203ENST00000403076 SMPD1P17405 629 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms