RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 FMO2Q99518 471 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 ATP10AO60312 1499 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 MLH3Q9UHC1 1453 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 A6NJR5 290 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 CCDC188H7C350 402 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 CXCR5P32302 372 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 MSH2P43246 934 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 RCN2Q14257 317 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 TTBK2Q6IQ55 1244 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 CYP4F22Q6NT55 531 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 RMDN2Q96LZ7 410 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 WDR11Q9BZH6 1224 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 STK32BQ9NY57 414 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 FBXO2Q9UK22 296 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 NOVA2Q9UNW9 492 aaKnown RBP11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 LRRIQ4A6NIV6 560 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 HNRNPDLO14979 420 aaKnown RBP11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 WBP4O75554 376 aaKnown RBP11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 POLGP54098 1239 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 LRRC63Q05C16 580 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 LRRC41Q15345 812 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 PTPN21Q16825 1174 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 KIAA2013Q8IYS2 634 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 ST13P4Q8IZP2 240 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 FAM133AQ8N9E0 248 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 RASGRP4Q8TDF6 673 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 SMCR8Q8TEV9 937 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 PAGE5Q96GU1 130 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 ACCSQ96QU6 501 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 MED10Q9BTT4 135 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 ZNF711Q9Y462 761 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 TMEM232C9JQI7 657 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 E9PMD0 336 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 ECM2O94769 699 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 GUCY2CP25092 1073 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 TMED2Q15363 201 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 PROSER3Q2NL68 480 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 GLE1Q53GS7 698 aaKnown RBP11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 ARL6IP4Q66PJ3 421 aaKnown RBP11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 HIBCHQ6NVY1 386 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 RFX6Q8HWS3 928 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 NIM1KQ8IY84 436 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 METTL13Q8N6R0 699 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 MRPL47Q9HD33 250 aaKnown RBP11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 NRBP2Q9NSY0 501 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 EPS15L1Q9UBC2 864 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 PCDHB4Q9Y5E5 795 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 IGSF1Q8N6C5 1336 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 SKIP12755 728 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 TAB3Q8N5C8 712 aaPredicted RBP11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 TBCKQ8TEA7 893 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 ATP1A3P13637 1013 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 GRM1Q13255 1194 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 SIRT2Q8IXJ6 389 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 NME8Q8N427 588 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 NDST4Q9H3R1 872 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 TMEM206Q9H813 350 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 IPO11Q9UI26 975 aaKnown RBP11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 ECE1P42892 770 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 NT5C2P49902 561 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 BLVRAP53004 296 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 HNRNPH2P55795 449 aaKnown RBP11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 ADCY2Q08462 1091 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 C6orf118Q5T5N4 469 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 TSC22D4Q9Y3Q8 395 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 ZNF804BA4D1E1 1349 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 TMOD1P28289 359 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 KRT31Q15323 416 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 MB21D1Q8N884 522 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 ATP6V0A1Q93050 837 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 TMEM2Q9UHN6 1383 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 PPIP5K2O43314 1243 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 MT-ND3P03897 115 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 PRPSAP1Q14558 356 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 NACC1Q96RE7 527 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 EFHD1Q9BUP0 239 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 GCNT4Q9P109 453 aa11.08□□□□□ -0.64
LIMCH1-203ENST00000396595 ERVK-7P63135 1459 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 GFPT2O94808 682 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 CYP27A1Q02318 531 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 FAM133BQ5BKY9 247 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 PPP4R3CPQ6ZMV5 832 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 KSR1Q8IVT5 923 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 OSBP2Q969R2 916 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 ZMYND12Q9H0C1 365 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 EMILIN3Q9NT22 766 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 SCHIP1Q9P0W5 487 aaPredicted RBP11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 MCF2LO15068 1137 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 MAP3K7O43318 606 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 CPP00450 1065 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 STX1BP61266 288 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 ABCB5Q2M3G0 1257 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 HDAC11Q96DB2 347 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 PCDHB6Q9Y5E3 794 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 KDM1AO60341 852 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 LRRN2O75325 713 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 ABCD1P33897 745 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 MAGEA9P43362 315 aa11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 NOP14P78316 857 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-203ENST00000396595 DR1Q01658 176 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms