RNA–Protein interactions for RNA: ENST00000394803.9

UBE2D3-208, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene UBE2D3, Length 2,227 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-208ENST00000394803 MTMR3Q13615 1198 aa11.05□□□□□ -0.64
UBE2D3-208ENST00000394803 CDC37Q16543 378 aaPredicted RBP11.05□□□□□ -0.64
UBE2D3-208ENST00000394803 ZCWPW2Q504Y3 356 aa11.05□□□□□ -0.64
UBE2D3-208ENST00000394803 HGSNATQ68CP4 663 aa11.05□□□□□ -0.64
UBE2D3-208ENST00000394803 YTHDF3Q7Z739 585 aaKnown RBP11.05□□□□□ -0.64
UBE2D3-208ENST00000394803 MAPKAPK5Q8IW41 473 aa11.05□□□□□ -0.64
UBE2D3-208ENST00000394803 IPO4Q8TEX9 1081 aaKnown RBP11.05□□□□□ -0.64
UBE2D3-208ENST00000394803 TBC1D22AQ8WUA7 517 aa11.05□□□□□ -0.64
UBE2D3-208ENST00000394803 CUL5Q93034 780 aa11.05□□□□□ -0.64
UBE2D3-208ENST00000394803 EEF2KMTQ96G04 330 aa11.05□□□□□ -0.64
UBE2D3-208ENST00000394803 ZIM3Q96PE6 472 aa11.05□□□□□ -0.64
UBE2D3-208ENST00000394803 LSM14BQ9BX40 385 aaKnown RBP11.05□□□□□ -0.64
UBE2D3-208ENST00000394803 RTFDC1Q9BY42 306 aaPredicted RBP11.05□□□□□ -0.64
UBE2D3-208ENST00000394803 MYO3BQ8WXR4 1341 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 PITPNM2Q9BZ72 1349 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 PNMA6FA0A0J9YX94 578 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 CETN3O15182 167 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 GTF2A1P52655 376 aaPredicted RBP11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 SLC7A5Q01650 507 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 KLHL30Q0D2K2 578 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 GRAPQ13588 217 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 CLUL1Q15846 466 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 SLC4A8Q2Y0W8 1093 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 USP17L2Q6R6M4 530 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 RUFY4Q6ZNE9 571 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 IQCKQ8N0W5 287 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 LINC00116Q8NCU8 138 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 GRAPLQ8TC17 118 aaPredicted RBP11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 HDAC7Q8WUI4 952 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 MTMR8Q96EF0 704 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 FAM163AQ96GL9 167 aaPredicted RBP11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 CCDC43Q96MW1 224 aaKnown RBP11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 MXD3Q9BW11 206 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 YY1AP1Q9H869 796 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 EPB41L5Q9HCM4 733 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 SBF2Q86WG5 1849 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 GRIN2DO15399 1336 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 CCDC188H7C350 402 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 EPHB6O15197 1021 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 BUB1O43683 1085 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 PALMO75781 387 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 CXCR5P32302 372 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 RPS6KA1Q15418 735 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 EZH2Q15910 746 aaKnown RBP11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 GPATCH4Q5T3I0 446 aaKnown RBP11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 TRIM59Q8IWR1 403 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 SYCE1Q8N0S2 351 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 ATP6V1G3Q96LB4 118 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 EPN3Q9H201 632 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 TAF1DQ9H5J8 278 aaPredicted RBP11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 DDX25Q9UHL0 483 aaKnown RBP11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 CDK5RAP2Q96SN8 1893 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 MYH10P35580 1976 aa11.04□□□□□ -0.64
UBE2D3-208ENST00000394803 SPATA31A5Q5VU36 1347 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 SPATA31A7Q8IWB4 1347 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 PDHBP11177 359 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 NR1D1P20393 614 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 HSPA9P38646 679 aaKnown RBP11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 POLR2FP61218 127 aaKnown RBP11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 GUCY2DQ02846 1103 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 KCNMA1Q12791 1236 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 DRP2Q13474 957 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 RAPGEF1Q13905 1077 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 PPP2R5EQ16537 467 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 KIAA0753Q2KHM9 967 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 PACS2Q86VP3 889 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 ZC3H3Q8IXZ2 948 aaKnown RBP11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 KCTD17Q8N5Z5 321 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 OTUD6BQ8N6M0 293 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 USP38Q8NB14 1042 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 HPS3Q969F9 1004 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 CEP95Q96GE4 821 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 VAT1LQ9HCJ6 419 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 NLRC4Q9NPP4 1024 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 PLCB1Q9NQ66 1216 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 SAP30BPQ9UHR5 308 aaKnown RBP11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 PCDHA12Q9UN75 941 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 NCK2O43639 380 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 FLOT1O75955 427 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 GFPT2O94808 682 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 ATP2B4P23634 1241 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 TNNI2P48788 182 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 BIRC3Q13489 604 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 TTMPQ5BVD1 217 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 ARMC9Q7Z3E5 817 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 FRMD5Q7Z6J6 570 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 SLFN12Q8IYM2 578 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 TSEN2Q8NCE0 465 aaKnown RBP11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 SLC44A5Q8NCS7 719 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 IFT81Q8WYA0 676 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 TBC1D5Q92609 795 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 DNAJC19Q96DA6 116 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 ZFP91Q96JP5 570 aaPredicted RBP11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 INPP4AQ96PE3 977 aaPredicted RBP11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 CEP89Q96ST8 783 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 ISCUQ9H1K1 167 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 INTUQ9ULD6 942 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 NFU1Q9UMS0 254 aa11.03□□□□□ -0.64
UBE2D3-208ENST00000394803 DAAM1Q9Y4D1 1078 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms