RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 ABCB11O95342 1321 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 PVALEFA0A1B0GWK0 134 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 FANCGO15287 622 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 SORBS3O60504 671 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 GAS7O60861 476 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 MYCLP12524 364 aaPredicted RBP12.36□□□□□ -0.43
TCOF1-203ENST00000394269 GTF2F1P35269 517 aaKnown RBP eCLIP12.36□□□□□ -0.43
TCOF1-203ENST00000394269 TMEM119Q4V9L6 283 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 DLK2Q6UY11 383 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 PURBQ96QR8 312 aaKnown RBP12.36□□□□□ -0.43
TCOF1-203ENST00000394269 NAP1L4Q99733 375 aaKnown RBP12.36□□□□□ -0.43
TCOF1-203ENST00000394269 ZNHIT6Q9NWK9 470 aaKnown RBP12.36□□□□□ -0.43
TCOF1-203ENST00000394269 TRIM10Q9UDY6 481 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 HACL1Q9UJ83 578 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 CENPFP49454 3210 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 NFIBO00712 420 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 KIF5CO60282 957 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 CYP11B2P19099 503 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 SREBF1P36956 1147 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 CYP27A1Q02318 531 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 MTMR2Q13614 643 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 CYP26C1Q6V0L0 522 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 DNAJC19Q96DA6 116 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 NLRC4Q9NPP4 1024 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 SMCHD1A6NHR9 2005 aa12.35□□□□□ -0.43
TCOF1-203ENST00000394269 PRPF6O94906 941 aaKnown RBP12.35□□□□□ -0.43
TCOF1-203ENST00000394269 EPS15P42566 896 aa12.35□□□□□ -0.43
TCOF1-203ENST00000394269 KIF4BQ2VIQ3 1234 aa12.35□□□□□ -0.43
TCOF1-203ENST00000394269 ETNPPLQ8TBG4 499 aa12.35□□□□□ -0.43
TCOF1-203ENST00000394269 EIF2AK1Q9BQI3 630 aaKnown RBP12.35□□□□□ -0.43
TCOF1-203ENST00000394269 SH2D4AQ9H788 454 aa12.35□□□□□ -0.43
TCOF1-203ENST00000394269 EMILIN3Q9NT22 766 aa12.35□□□□□ -0.43
TCOF1-203ENST00000394269 MRPL11Q9Y3B7 192 aaKnown RBP12.35□□□□□ -0.43
TCOF1-203ENST00000394269 KDM3AQ9Y4C1 1321 aa12.35□□□□□ -0.43
TCOF1-203ENST00000394269 TFRCP02786 760 aaKnown RBP12.35□□□□□ -0.43
TCOF1-203ENST00000394269 ARP10275 920 aa12.35□□□□□ -0.43
TCOF1-203ENST00000394269 APBA1Q02410 837 aa12.35□□□□□ -0.43
TCOF1-203ENST00000394269 SP4Q02446 784 aa12.35□□□□□ -0.43
TCOF1-203ENST00000394269 GRIPAP1Q4V328 841 aa12.35□□□□□ -0.43
TCOF1-203ENST00000394269 TCERG1LQ5VWI1 586 aa12.35□□□□□ -0.43
TCOF1-203ENST00000394269 CENPPQ6IPU0 288 aa12.35□□□□□ -0.43
TCOF1-203ENST00000394269 TMTC1Q8IUR5 882 aa12.35□□□□□ -0.43
TCOF1-203ENST00000394269 LENG9Q96B70 501 aa12.35□□□□□ -0.43
TCOF1-203ENST00000394269 DYDC2Q96IM9 177 aa12.35□□□□□ -0.43
TCOF1-203ENST00000394269 ZNF577Q9BSK1 485 aa12.35□□□□□ -0.43
TCOF1-203ENST00000394269 NDST4Q9H3R1 872 aa12.35□□□□□ -0.43
TCOF1-203ENST00000394269 NRXN2Q9P2S2 1712 aa12.35□□□□□ -0.43
TCOF1-203ENST00000394269 EIF2AK2P19525 551 aaKnown RBP12.34□□□□□ -0.43
TCOF1-203ENST00000394269 KSR1Q8IVT5 923 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 WDR18Q9BV38 432 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 IKZF4Q9H2S9 585 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 PUF60Q9UHX1 559 aaKnown RBP12.34□□□□□ -0.43
TCOF1-203ENST00000394269 EPN1Q9Y6I3 576 aaPredicted RBP12.34□□□□□ -0.43
TCOF1-203ENST00000394269 COL4A5P29400 1685 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 CLIC2O15247 247 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 MYH8P13535 1937 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 CASP5P51878 434 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 TGFB2P61812 414 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 ADAM9Q13443 819 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 ARSHQ5FYA8 562 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 BTNL9Q6UXG8 535 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 CACNA2D4Q7Z3S7 1137 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 KIAA1328Q86T90 577 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 SFR1Q86XK3 245 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 GUF1Q8N442 669 aaKnown RBP12.34□□□□□ -0.43
TCOF1-203ENST00000394269 REEP2Q9BRK0 252 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 MYH4Q9Y623 1939 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 CTIFO43310 598 aaKnown RBP12.34□□□□□ -0.43
TCOF1-203ENST00000394269 TBCAO75347 108 aaKnown RBP12.34□□□□□ -0.43
TCOF1-203ENST00000394269 IPO7O95373 1038 aaKnown RBP12.34□□□□□ -0.43
TCOF1-203ENST00000394269 GCNT3O95395 438 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 SPATA31C1P0DKV0 1188 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 CBX1P83916 185 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 ANGEL2Q5VTE6 544 aaKnown RBP12.34□□□□□ -0.43
TCOF1-203ENST00000394269 RRAGAQ7L523 313 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 HOMEZQ8IX15 550 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 BANK1Q8NDB2 785 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 UBXN4Q92575 508 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 PKNOX2Q96KN3 472 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 DEF6Q9H4E7 631 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 RABGAP1Q9Y3P9 1069 aa12.34□□□□□ -0.43
TCOF1-203ENST00000394269 KCNJ6P48051 423 aa12.33□□□□□ -0.44
TCOF1-203ENST00000394269 TNFAIP1Q13829 316 aa12.33□□□□□ -0.44
TCOF1-203ENST00000394269 VWA3BQ502W6 1294 aa12.33□□□□□ -0.44
TCOF1-203ENST00000394269 TEX35Q5T0J7 233 aa12.33□□□□□ -0.44
TCOF1-203ENST00000394269 FAM83AQ86UY5 434 aa12.33□□□□□ -0.44
TCOF1-203ENST00000394269 MYCT1Q8N699 235 aa12.33□□□□□ -0.44
TCOF1-203ENST00000394269 NLGN2Q8NFZ4 835 aa12.33□□□□□ -0.44
TCOF1-203ENST00000394269 ZNF507Q8TCN5 953 aa12.33□□□□□ -0.44
TCOF1-203ENST00000394269 C10orf71Q711Q0 1435 aa12.33□□□□□ -0.44
TCOF1-203ENST00000394269 EPHB6O15197 1021 aa12.33□□□□□ -0.44
TCOF1-203ENST00000394269 PLEKP08567 350 aaPredicted RBP12.33□□□□□ -0.44
TCOF1-203ENST00000394269 KCNA1Q09470 495 aa12.33□□□□□ -0.44
TCOF1-203ENST00000394269 CEP55Q53EZ4 464 aa12.33□□□□□ -0.44
TCOF1-203ENST00000394269 ZNF397Q8NF99 534 aaPredicted RBP12.33□□□□□ -0.44
TCOF1-203ENST00000394269 WRNIP1Q96S55 665 aa12.33□□□□□ -0.44
TCOF1-203ENST00000394269 RUSC1Q9BVN2 902 aa12.33□□□□□ -0.44
TCOF1-203ENST00000394269 NAA15Q9BXJ9 866 aaKnown RBP12.33□□□□□ -0.44
TCOF1-203ENST00000394269 MTFR1LQ9H019 292 aa12.33□□□□□ -0.44
TCOF1-203ENST00000394269 FEM1BQ9UK73 627 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms