RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 USH1GQ495M9 461 aa17.97■□□□□ 0.47
NKX3-1-201ENST00000380871 SV2BQ7L1I2 683 aa17.97■□□□□ 0.47
NKX3-1-201ENST00000380871 SPICE1Q8N0Z3 855 aa17.97■□□□□ 0.47
NKX3-1-201ENST00000380871 EDIL3O43854 480 aa17.97■□□□□ 0.47
NKX3-1-201ENST00000380871 PPP1R11O60927 126 aaPredicted RBP17.97■□□□□ 0.47
NKX3-1-201ENST00000380871 ENOX2Q16206 610 aaKnown RBP17.97■□□□□ 0.47
NKX3-1-201ENST00000380871 AOC3Q16853 763 aa17.97■□□□□ 0.47
NKX3-1-201ENST00000380871 CERS3Q8IU89 383 aa17.97■□□□□ 0.47
NKX3-1-201ENST00000380871 MMGT1Q8N4V1 131 aa17.97■□□□□ 0.47
NKX3-1-201ENST00000380871 MAGEF1Q9HAY2 307 aa17.97■□□□□ 0.47
NKX3-1-201ENST00000380871 COL24A1Q17RW2 1714 aa17.97■□□□□ 0.47
NKX3-1-201ENST00000380871 HNRNPH3P31942 346 aaKnown RBP17.97■□□□□ 0.47
NKX3-1-201ENST00000380871 PDE6BP35913 854 aa17.97■□□□□ 0.47
NKX3-1-201ENST00000380871 MAGEA1P43355 309 aa17.97■□□□□ 0.47
NKX3-1-201ENST00000380871 SEPT2Q15019 361 aa17.97■□□□□ 0.47
NKX3-1-201ENST00000380871 ECM1Q16610 540 aa17.97■□□□□ 0.47
NKX3-1-201ENST00000380871 SNX29Q8TEQ0 813 aa17.97■□□□□ 0.47
NKX3-1-201ENST00000380871 ARL8AQ96BM9 186 aa17.97■□□□□ 0.47
NKX3-1-201ENST00000380871 TLR10Q9BXR5 811 aa17.97■□□□□ 0.47
NKX3-1-201ENST00000380871 FGFBP2Q9BYJ0 223 aa17.97■□□□□ 0.47
NKX3-1-201ENST00000380871 CCT5P48643 541 aa17.96■□□□□ 0.47
NKX3-1-201ENST00000380871 NAP1L1P55209 391 aaKnown RBP17.96■□□□□ 0.47
NKX3-1-201ENST00000380871 ZNF543Q08ER8 600 aa17.96■□□□□ 0.47
NKX3-1-201ENST00000380871 CCDC181Q5TID7 509 aa17.96■□□□□ 0.47
NKX3-1-201ENST00000380871 LRRC55Q6ZSA7 311 aa17.96■□□□□ 0.47
NKX3-1-201ENST00000380871 LARP4BQ92615 738 aaKnown RBP17.96■□□□□ 0.47
NKX3-1-201ENST00000380871 PACSIN2Q9UNF0 486 aaPredicted RBP17.96■□□□□ 0.47
NKX3-1-201ENST00000380871 SCAF8Q9UPN6 1271 aaKnown RBP17.96■□□□□ 0.47
NKX3-1-201ENST00000380871 EEF2P13639 858 aaKnown RBP17.96■□□□□ 0.47
NKX3-1-201ENST00000380871 RNASE9P60153 205 aaKnown RBP17.96■□□□□ 0.47
NKX3-1-201ENST00000380871 AMPD3Q01432 767 aa17.96■□□□□ 0.47
NKX3-1-201ENST00000380871 GABPAQ06546 454 aa17.96■□□□□ 0.47
NKX3-1-201ENST00000380871 MAN2A1Q16706 1144 aa17.96■□□□□ 0.47
NKX3-1-201ENST00000380871 TDRD12Q587J7 1177 aaKnown RBP17.96■□□□□ 0.47
NKX3-1-201ENST00000380871 IQCEQ6IPM2 695 aa17.96■□□□□ 0.47
NKX3-1-201ENST00000380871 MASTLQ96GX5 879 aa17.96■□□□□ 0.47
NKX3-1-201ENST00000380871 RIOX1Q9H6W3 641 aa17.96■□□□□ 0.47
NKX3-1-201ENST00000380871 IRAK1P51617 712 aa17.96■□□□□ 0.46
NKX3-1-201ENST00000380871 SH2D3CQ8N5H7 860 aa17.96■□□□□ 0.46
NKX3-1-201ENST00000380871 CORO7P57737 925 aa17.95■□□□□ 0.46
NKX3-1-201ENST00000380871 ARID5AQ03989 594 aa17.95■□□□□ 0.46
NKX3-1-201ENST00000380871 KCNMA1Q12791 1236 aa17.95■□□□□ 0.46
NKX3-1-201ENST00000380871 ASPRV1Q53RT3 343 aa17.95■□□□□ 0.46
NKX3-1-201ENST00000380871 DDX12PQ92771 950 aa17.95■□□□□ 0.46
NKX3-1-201ENST00000380871 PSTPIP2Q9H939 334 aa17.95■□□□□ 0.46
NKX3-1-201ENST00000380871 HYOU1Q9Y4L1 999 aa17.95■□□□□ 0.46
NKX3-1-201ENST00000380871 CERKLQ49MI3 558 aaPredicted RBP17.95■□□□□ 0.46
NKX3-1-201ENST00000380871 TTMPQ5BVD1 217 aa17.95■□□□□ 0.46
NKX3-1-201ENST00000380871 KLHDC7AQ5VTJ3 777 aa17.95■□□□□ 0.46
NKX3-1-201ENST00000380871 KCTD16Q68DU8 428 aa17.95■□□□□ 0.46
NKX3-1-201ENST00000380871 CCDC70Q6NSX1 233 aa17.95■□□□□ 0.46
NKX3-1-201ENST00000380871 UNC13DQ70J99 1090 aa17.95■□□□□ 0.46
NKX3-1-201ENST00000380871 CACNA2D4Q7Z3S7 1137 aa17.95■□□□□ 0.46
NKX3-1-201ENST00000380871 MTMR9Q96QG7 549 aa17.95■□□□□ 0.46
NKX3-1-201ENST00000380871 TAF1LQ8IZX4 1826 aa17.95■□□□□ 0.46
NKX3-1-201ENST00000380871 H0YIN7 160 aa17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 FTCDO95954 541 aa17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 MAGEA9P43362 315 aa17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 PPARDQ03181 441 aa17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 TMEM266Q2M3C6 531 aa17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 HGSNATQ68CP4 663 aa17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 STIM2Q9P246 746 aa17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 MAST2Q6P0Q8 1798 aa17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 THSD7AQ9UPZ6 1657 aa17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 CLRN2A0PK11 232 aa17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 TULP1O00294 542 aaPredicted RBP17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 ECE2O60344 883 aa17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 TLR2O60603 784 aa17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 SHOX2O60902 331 aaPredicted RBP17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 KRT14P02533 472 aa17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 GLI1P08151 1106 aa17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 FAM153BP0C7A2 387 aa17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 TRADDQ15628 312 aa17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 FAM153CQ494X1 144 aa17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 DNAAF5Q86Y56 855 aa17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 ALS2CR12Q96Q35 445 aa17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 FAM153AQ9UHL3 310 aa17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 ASTE1Q2TB18 679 aaPredicted RBP17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 SLFN13Q68D06 897 aa17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 PDXDC1Q6P996 788 aa17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 DNAJC18Q9H819 358 aa17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 PCDHA1Q9Y5I3 950 aa17.94■□□□□ 0.46
NKX3-1-201ENST00000380871 GRIN2DO15399 1336 aa17.93■□□□□ 0.46
NKX3-1-201ENST00000380871 PNMA6FA0A0J9YX94 578 aa17.93■□□□□ 0.46
NKX3-1-201ENST00000380871 LCA5LO95447 670 aa17.93■□□□□ 0.46
NKX3-1-201ENST00000380871 ZYXQ15942 572 aaKnown RBP17.93■□□□□ 0.46
NKX3-1-201ENST00000380871 PTPROQ16827 1216 aa17.93■□□□□ 0.46
NKX3-1-201ENST00000380871 C8orf74Q6P047 294 aa17.93■□□□□ 0.46
NKX3-1-201ENST00000380871 CARSP49589 748 aaKnown RBP17.93■□□□□ 0.46
NKX3-1-201ENST00000380871 GNGT1P63211 74 aa17.93■□□□□ 0.46
NKX3-1-201ENST00000380871 SLC30A10Q6XR72 485 aa17.93■□□□□ 0.46
NKX3-1-201ENST00000380871 DDX25Q9UHL0 483 aaKnown RBP17.93■□□□□ 0.46
NKX3-1-201ENST00000380871 TCP10L2B9ZVM9 353 aa17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 TCP1P17987 556 aaKnown RBP17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 NOP2P46087 812 aaKnown RBP17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 QRICH1Q2TAL8 776 aa17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 KRT79Q5XKE5 535 aa17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 ZNF572Q7Z3I7 529 aaPredicted RBP17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 NELFCDQ8IXH7 590 aa17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 STAT3P40763 770 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms