RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 NAPAP54920 295 aa24.9■■□□□ 1.58
CCDC28B-201ENST00000373602 ZNF200P98182 395 aaPredicted RBP24.9■■□□□ 1.58
CCDC28B-201ENST00000373602 HIC1Q14526 733 aa24.9■■□□□ 1.58
CCDC28B-201ENST00000373602 PPP1R18Q6NYC8 613 aa24.9■■□□□ 1.58
CCDC28B-201ENST00000373602 BLOC1S2Q6QNY1 142 aa24.9■■□□□ 1.58
CCDC28B-201ENST00000373602 Q6ZUG5 572 aa24.9■■□□□ 1.58
CCDC28B-201ENST00000373602 FBXL16Q8N461 479 aa24.9■■□□□ 1.58
CCDC28B-201ENST00000373602 ZNF713Q8N859 430 aaPredicted RBP24.9■■□□□ 1.58
CCDC28B-201ENST00000373602 CDHR1Q96JP9 859 aa24.9■■□□□ 1.58
CCDC28B-201ENST00000373602 FTOQ9C0B1 505 aaKnown RBP eCLIP24.9■■□□□ 1.58
CCDC28B-201ENST00000373602 UBIAD1Q9Y5Z9 338 aa24.9■■□□□ 1.58
CCDC28B-201ENST00000373602 PARNO95453 639 aaKnown RBP24.89■■□□□ 1.58
CCDC28B-201ENST00000373602 CKBP12277 381 aa24.89■■□□□ 1.58
CCDC28B-201ENST00000373602 FOSL2P15408 326 aa24.89■■□□□ 1.58
CCDC28B-201ENST00000373602 ITGB5P18084 799 aa24.89■■□□□ 1.58
CCDC28B-201ENST00000373602 APOBRQ0VD83 1088 aa24.89■■□□□ 1.58
CCDC28B-201ENST00000373602 GPNMBQ14956 572 aa24.89■■□□□ 1.58
CCDC28B-201ENST00000373602 TRIM71Q2Q1W2 868 aaKnown RBP24.89■■□□□ 1.58
CCDC28B-201ENST00000373602 LRRC8DQ7L1W4 858 aa24.89■■□□□ 1.58
CCDC28B-201ENST00000373602 GIMAP8Q8ND71 665 aaPredicted RBP24.89■■□□□ 1.58
CCDC28B-201ENST00000373602 RIC8AQ9NPQ8 531 aa24.89■■□□□ 1.58
CCDC28B-201ENST00000373602 YBX2Q9Y2T7 364 aaKnown RBP24.89■■□□□ 1.58
CCDC28B-201ENST00000373602 TELO2Q9Y4R8 837 aa24.89■■□□□ 1.58
CCDC28B-201ENST00000373602 DOCK5Q9H7D0 1870 aa24.88■■□□□ 1.57
CCDC28B-201ENST00000373602 STXBP3O00186 592 aa24.88■■□□□ 1.57
CCDC28B-201ENST00000373602 EPB41L2O43491 1005 aaKnown RBP24.88■■□□□ 1.57
CCDC28B-201ENST00000373602 KCNA2P16389 499 aa24.88■■□□□ 1.57
CCDC28B-201ENST00000373602 ATP2A2P16615 1042 aaKnown RBP24.88■■□□□ 1.57
CCDC28B-201ENST00000373602 HOXC8P31273 242 aa24.88■■□□□ 1.57
CCDC28B-201ENST00000373602 METAP2P50579 478 aaKnown RBP eCLIP24.88■■□□□ 1.57
CCDC28B-201ENST00000373602 MAFAQ8NHW3 353 aaPredicted RBP24.88■■□□□ 1.57
CCDC28B-201ENST00000373602 BRF1Q92994 677 aa24.88■■□□□ 1.57
CCDC28B-201ENST00000373602 WNT8BQ93098 351 aa24.88■■□□□ 1.57
CCDC28B-201ENST00000373602 NKX2-4Q9H2Z4 354 aa24.88■■□□□ 1.57
CCDC28B-201ENST00000373602 EHMT1Q9H9B1 1298 aa24.88■■□□□ 1.57
CCDC28B-201ENST00000373602 NAP1L2Q9ULW6 460 aaPredicted RBP24.88■■□□□ 1.57
CCDC28B-201ENST00000373602 CCDC196A0A1B0GTZ2 297 aa24.87■■□□□ 1.57
CCDC28B-201ENST00000373602 ATP9AO75110 1047 aa24.87■■□□□ 1.57
CCDC28B-201ENST00000373602 SMIM10L2AP0DMW4 78 aa24.87■■□□□ 1.57
CCDC28B-201ENST00000373602 SMIM10L2BP0DMW5 78 aa24.87■■□□□ 1.57
CCDC28B-201ENST00000373602 RPS6KB1P23443 525 aa24.87■■□□□ 1.57
CCDC28B-201ENST00000373602 PSMA5P28066 241 aa24.87■■□□□ 1.57
CCDC28B-201ENST00000373602 ADD1P35611 737 aaKnown RBP24.87■■□□□ 1.57
CCDC28B-201ENST00000373602 RABGGTBP53611 331 aa24.87■■□□□ 1.57
CCDC28B-201ENST00000373602 TET1Q8NFU7 2136 aa24.87■■□□□ 1.57
CCDC28B-201ENST00000373602 AGXT2Q9BYV1 514 aa24.87■■□□□ 1.57
CCDC28B-201ENST00000373602 JADE2Q9NQC1 790 aa24.87■■□□□ 1.57
CCDC28B-201ENST00000373602 BARHL2Q9NY43 387 aa24.87■■□□□ 1.57
CCDC28B-201ENST00000373602 PCDHA11Q9Y5I1 949 aa24.87■■□□□ 1.57
CCDC28B-201ENST00000373602 GBF1Q92538 1859 aa24.86■■□□□ 1.57
CCDC28B-201ENST00000373602 NID2Q14112 1375 aa24.86■■□□□ 1.57
CCDC28B-201ENST00000373602 C17orf102A2RUQ5 167 aa24.86■■□□□ 1.57
CCDC28B-201ENST00000373602 MAFGO15525 162 aa24.86■■□□□ 1.57
CCDC28B-201ENST00000373602 CXCL10P02778 98 aa24.86■■□□□ 1.57
CCDC28B-201ENST00000373602 ADCY7P51828 1080 aa24.86■■□□□ 1.57
CCDC28B-201ENST00000373602 TRAF7Q6Q0C0 670 aa24.86■■□□□ 1.57
CCDC28B-201ENST00000373602 SERINC5Q86VE9 423 aa24.86■■□□□ 1.57
CCDC28B-201ENST00000373602 SLC9A7Q96T83 725 aa24.86■■□□□ 1.57
CCDC28B-201ENST00000373602 RNPEPQ9H4A4 650 aa24.86■■□□□ 1.57
CCDC28B-201ENST00000373602 SMCO2A6NFE2 343 aa24.85■■□□□ 1.57
CCDC28B-201ENST00000373602 NBNO60934 754 aa24.85■■□□□ 1.57
CCDC28B-201ENST00000373602 BAIAP3O94812 1187 aa24.85■■□□□ 1.57
CCDC28B-201ENST00000373602 FOSP01100 380 aaPredicted RBP24.85■■□□□ 1.57
CCDC28B-201ENST00000373602 SP4Q02446 784 aa24.85■■□□□ 1.57
CCDC28B-201ENST00000373602 MTMR1Q13613 665 aa24.85■■□□□ 1.57
CCDC28B-201ENST00000373602 ZNF618Q5T7W0 954 aa24.85■■□□□ 1.57
CCDC28B-201ENST00000373602 TRIM50Q86XT4 487 aa24.85■■□□□ 1.57
CCDC28B-201ENST00000373602 PHOSPHO2Q8TCD6 241 aa24.85■■□□□ 1.57
CCDC28B-201ENST00000373602 ATP6V0A1Q93050 837 aa24.85■■□□□ 1.57
CCDC28B-201ENST00000373602 GLT8D2Q9H1C3 349 aa24.85■■□□□ 1.57
CCDC28B-201ENST00000373602 SLC28A3Q9HAS3 691 aa24.85■■□□□ 1.57
CCDC28B-201ENST00000373602 ZNF215Q9UL58 517 aaPredicted RBP24.85■■□□□ 1.57
CCDC28B-201ENST00000373602 PFKFB3Q16875 520 aaPredicted RBP24.84■■□□□ 1.57
CCDC28B-201ENST00000373602 UTP14CQ5TAP6 766 aaKnown RBP24.84■■□□□ 1.57
CCDC28B-201ENST00000373602 MYOGP15173 224 aa24.83■■□□□ 1.57
CCDC28B-201ENST00000373602 CLK2P49760 499 aaKnown RBP24.83■■□□□ 1.57
CCDC28B-201ENST00000373602 CNKSR3Q6P9H4 555 aa24.83■■□□□ 1.57
CCDC28B-201ENST00000373602 PGBD1Q96JS3 809 aa24.83■■□□□ 1.57
CCDC28B-201ENST00000373602 MXRA8Q9BRK3 442 aa24.83■■□□□ 1.57
CCDC28B-201ENST00000373602 ANO3Q9BYT9 981 aa24.83■■□□□ 1.57
CCDC28B-201ENST00000373602 GSTTP1A0A1W2PQM5 241 aa24.82■■□□□ 1.56
CCDC28B-201ENST00000373602 TREHO43280 583 aa24.82■■□□□ 1.56
CCDC28B-201ENST00000373602 SCG2P13521 617 aa24.82■■□□□ 1.56
CCDC28B-201ENST00000373602 TCF7P36402 384 aaPredicted RBP24.82■■□□□ 1.56
CCDC28B-201ENST00000373602 THPOP40225 353 aa24.82■■□□□ 1.56
CCDC28B-201ENST00000373602 AP3B2Q13367 1082 aa24.82■■□□□ 1.56
CCDC28B-201ENST00000373602 SEPT1Q8WYJ6 367 aa24.82■■□□□ 1.56
CCDC28B-201ENST00000373602 PRDM12Q9H4Q4 367 aa24.82■■□□□ 1.56
CCDC28B-201ENST00000373602 SETD4Q9NVD3 440 aa24.82■■□□□ 1.56
CCDC28B-201ENST00000373602 PKD2L1Q9P0L9 805 aa24.82■■□□□ 1.56
CCDC28B-201ENST00000373602 PRPF3O43395 683 aaKnown RBP24.81■■□□□ 1.56
CCDC28B-201ENST00000373602 GNAT1P11488 350 aa24.81■■□□□ 1.56
CCDC28B-201ENST00000373602 EVCP57679 992 aa24.81■■□□□ 1.56
CCDC28B-201ENST00000373602 MBTPS1Q14703 1052 aa24.81■■□□□ 1.56
CCDC28B-201ENST00000373602 HERC6Q8IVU3 1022 aa24.81■■□□□ 1.56
CCDC28B-201ENST00000373602 PHF6Q8IWS0 365 aaKnown RBP eCLIP24.81■■□□□ 1.56
CCDC28B-201ENST00000373602 CYP2W1Q8TAV3 490 aa24.81■■□□□ 1.56
CCDC28B-201ENST00000373602 GAS2L1Q99501 681 aaPredicted RBP24.81■■□□□ 1.56
CCDC28B-201ENST00000373602 KCNH7Q9NS40 1196 aa24.81■■□□□ 1.56
CCDC28B-201ENST00000373602 TMEM260Q9NX78 707 aa24.81■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms