RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 LLPHQ9BRT6 129 aaKnown RBP19.33■□□□□ 0.68
CLN3-203ENST00000357806 KCNH7Q9NS40 1196 aa19.33■□□□□ 0.68
CLN3-203ENST00000357806 KCNJ14Q9UNX9 436 aa19.33■□□□□ 0.68
CLN3-203ENST00000357806 M0R2N6 131 aa19.32■□□□□ 0.68
CLN3-203ENST00000357806 ATP9AO75110 1047 aa19.32■□□□□ 0.68
CLN3-203ENST00000357806 PPFIA4O75335 1185 aa19.32■□□□□ 0.68
CLN3-203ENST00000357806 F2P00734 622 aa19.32■□□□□ 0.68
CLN3-203ENST00000357806 ZNF286BP0CG31 522 aa19.32■□□□□ 0.68
CLN3-203ENST00000357806 SETQ01105 290 aaPredicted RBP19.32■□□□□ 0.68
CLN3-203ENST00000357806 FAAP100Q0VG06 881 aa19.32■□□□□ 0.68
CLN3-203ENST00000357806 NPY5RQ15761 445 aa19.32■□□□□ 0.68
CLN3-203ENST00000357806 CYP2W1Q8TAV3 490 aa19.32■□□□□ 0.68
CLN3-203ENST00000357806 PKD2L1Q9P0L9 805 aa19.32■□□□□ 0.68
CLN3-203ENST00000357806 FAM86B1E9PN63 330 aa19.31■□□□□ 0.68
CLN3-203ENST00000357806 MEIS1O00470 390 aa19.31■□□□□ 0.68
CLN3-203ENST00000357806 FAM86B2P0C5J1 330 aa19.31■□□□□ 0.68
CLN3-203ENST00000357806 MCM2P49736 904 aa19.31■□□□□ 0.68
CLN3-203ENST00000357806 NBPF20Q3BBV1 942 aa19.31■□□□□ 0.68
CLN3-203ENST00000357806 FAM47CQ5HY64 1035 aa19.31■□□□□ 0.68
CLN3-203ENST00000357806 NFRKBQ6P4R8 1299 aa19.31■□□□□ 0.68
CLN3-203ENST00000357806 BCAS3Q9H6U6 928 aa19.31■□□□□ 0.68
CLN3-203ENST00000357806 TMEM39AQ9NV64 488 aa19.31■□□□□ 0.68
CLN3-203ENST00000357806 NFASCO94856 1347 aa19.31■□□□□ 0.68
CLN3-203ENST00000357806 IGLV3-22A0A075B6J6 115 aa19.3■□□□□ 0.68
CLN3-203ENST00000357806 HMGN5P82970 282 aaKnown RBP19.3■□□□□ 0.68
CLN3-203ENST00000357806 SP4Q02446 784 aa19.3■□□□□ 0.68
CLN3-203ENST00000357806 PTPN11Q06124 597 aaPredicted RBP19.3■□□□□ 0.68
CLN3-203ENST00000357806 TRIM29Q14134 588 aa19.3■□□□□ 0.68
CLN3-203ENST00000357806 KRT25Q7Z3Z0 450 aa19.3■□□□□ 0.68
CLN3-203ENST00000357806 PLA2G4DQ86XP0 818 aa19.3■□□□□ 0.68
CLN3-203ENST00000357806 TBCKQ8TEA7 893 aa19.3■□□□□ 0.68
CLN3-203ENST00000357806 KAT2BQ92831 832 aa19.3■□□□□ 0.68
CLN3-203ENST00000357806 GPR20Q99678 358 aa19.3■□□□□ 0.68
CLN3-203ENST00000357806 LBHD1Q9BQE6 289 aaPredicted RBP19.3■□□□□ 0.68
CLN3-203ENST00000357806 SDF4Q9BRK5 362 aa19.3■□□□□ 0.68
CLN3-203ENST00000357806 AGO4Q9HCK5 861 aaKnown RBP19.3■□□□□ 0.68
CLN3-203ENST00000357806 BRMS1Q9HCU9 246 aa19.3■□□□□ 0.68
CLN3-203ENST00000357806 GJB4Q9NTQ9 266 aa19.3■□□□□ 0.68
CLN3-203ENST00000357806 KIAA0355O15063 1070 aa19.29■□□□□ 0.68
CLN3-203ENST00000357806 CD4P01730 458 aa19.29■□□□□ 0.68
CLN3-203ENST00000357806 ARP10275 920 aa19.29■□□□□ 0.68
CLN3-203ENST00000357806 CIITAP33076 1130 aa19.29■□□□□ 0.68
CLN3-203ENST00000357806 USP11P51784 963 aa19.29■□□□□ 0.68
CLN3-203ENST00000357806 CHMP4BP1P59074 171 aa19.29■□□□□ 0.68
CLN3-203ENST00000357806 NONOQ15233 471 aaKnown RBP eCLIP19.29■□□□□ 0.68
CLN3-203ENST00000357806 CHRDL2Q6WN34 429 aa19.29■□□□□ 0.68
CLN3-203ENST00000357806 SH3RF1Q7Z6J0 888 aa19.29■□□□□ 0.68
CLN3-203ENST00000357806 JPH1Q9HDC5 661 aaPredicted RBP19.29■□□□□ 0.68
CLN3-203ENST00000357806 CCDC194A0A1B0GVG4 234 aa19.28■□□□□ 0.68
CLN3-203ENST00000357806 TRIM43BA6NCK2 446 aa19.28■□□□□ 0.68
CLN3-203ENST00000357806 B4GALT4O60513 344 aa19.28■□□□□ 0.68
CLN3-203ENST00000357806 LGALS2P05162 132 aa19.28■□□□□ 0.68
CLN3-203ENST00000357806 KRT2P35908 639 aa19.28■□□□□ 0.68
CLN3-203ENST00000357806 MAGEA10P43363 369 aaPredicted RBP19.28■□□□□ 0.68
CLN3-203ENST00000357806 PSEN2P49810 448 aa19.28■□□□□ 0.68
CLN3-203ENST00000357806 MFSD10Q14728 455 aa19.28■□□□□ 0.68
CLN3-203ENST00000357806 TRIM43Q96BQ3 446 aaPredicted RBP19.28■□□□□ 0.68
CLN3-203ENST00000357806 SLC9A2Q9UBY0 812 aa19.28■□□□□ 0.68
CLN3-203ENST00000357806 TBX21Q9UL17 535 aa19.28■□□□□ 0.68
CLN3-203ENST00000357806 SCN5AQ14524 2016 aa19.28■□□□□ 0.68
CLN3-203ENST00000357806 HAS3O00219 553 aa19.28■□□□□ 0.68
CLN3-203ENST00000357806 CD2BP2O95400 341 aaKnown RBP19.28■□□□□ 0.68
CLN3-203ENST00000357806 SUPT20HL2P0C7V6 817 aa19.28■□□□□ 0.68
CLN3-203ENST00000357806 RAG1P15918 1043 aa19.28■□□□□ 0.68
CLN3-203ENST00000357806 MDM2Q00987 491 aaPredicted RBP19.28■□□□□ 0.68
CLN3-203ENST00000357806 KIAA0753Q2KHM9 967 aa19.28■□□□□ 0.68
CLN3-203ENST00000357806 PRR16Q569H4 304 aa19.28■□□□□ 0.68
CLN3-203ENST00000357806 SESTD1Q86VW0 696 aa19.28■□□□□ 0.68
CLN3-203ENST00000357806 GDF15Q99988 308 aa19.28■□□□□ 0.68
CLN3-203ENST00000357806 C16orf70Q9BSU1 422 aa19.28■□□□□ 0.68
CLN3-203ENST00000357806 ZNF215Q9UL58 517 aaPredicted RBP19.28■□□□□ 0.68
CLN3-203ENST00000357806 H3BRB1 525 aa19.27■□□□□ 0.67
CLN3-203ENST00000357806 IPO5O00410 1097 aaKnown RBP19.27■□□□□ 0.67
CLN3-203ENST00000357806 MMP1P03956 469 aa19.27■□□□□ 0.67
CLN3-203ENST00000357806 TCF7P36402 384 aaPredicted RBP19.27■□□□□ 0.67
CLN3-203ENST00000357806 FOSBP53539 338 aa19.27■□□□□ 0.67
CLN3-203ENST00000357806 ITGB3BPQ13352 177 aaPredicted RBP19.27■□□□□ 0.67
CLN3-203ENST00000357806 C7orf31Q8N865 590 aa19.27■□□□□ 0.67
CLN3-203ENST00000357806 FAM184AQ8NB25 1140 aa19.27■□□□□ 0.67
CLN3-203ENST00000357806 SEPT1Q8WYJ6 367 aa19.27■□□□□ 0.67
CLN3-203ENST00000357806 TMX3Q96JJ7 454 aa19.27■□□□□ 0.67
CLN3-203ENST00000357806 ZNF577Q9BSK1 485 aa19.27■□□□□ 0.67
CLN3-203ENST00000357806 TRPV6Q9H1D0 765 aa19.27■□□□□ 0.67
CLN3-203ENST00000357806 TUT1Q9H6E5 874 aaKnown RBP19.27■□□□□ 0.67
CLN3-203ENST00000357806 TRMT13Q9NUP7 481 aaKnown RBP19.27■□□□□ 0.67
CLN3-203ENST00000357806 PCDH10Q9P2E7 1040 aa19.27■□□□□ 0.67
CLN3-203ENST00000357806 COLQQ9Y215 455 aaPredicted RBP19.27■□□□□ 0.67
CLN3-203ENST00000357806 INF2Q27J81 1249 aa19.26■□□□□ 0.67
CLN3-203ENST00000357806 KRT40Q6A162 431 aa19.26■□□□□ 0.67
CLN3-203ENST00000357806 OXER1Q8TDS5 423 aa19.26■□□□□ 0.67
CLN3-203ENST00000357806 PPP1R13LQ8WUF5 828 aa19.26■□□□□ 0.67
CLN3-203ENST00000357806 TELO2Q9Y4R8 837 aa19.26■□□□□ 0.67
CLN3-203ENST00000357806 TIMP1P01033 207 aa19.25■□□□□ 0.67
CLN3-203ENST00000357806 BMP8BP34820 402 aa19.25■□□□□ 0.67
CLN3-203ENST00000357806 UTP14CQ5TAP6 766 aaKnown RBP19.25■□□□□ 0.67
CLN3-203ENST00000357806 MOXD1Q6UVY6 613 aa19.25■□□□□ 0.67
CLN3-203ENST00000357806 PIK3AP1Q6ZUJ8 805 aa19.25■□□□□ 0.67
CLN3-203ENST00000357806 TRIM50Q86XT4 487 aa19.25■□□□□ 0.67
CLN3-203ENST00000357806 BADQ92934 168 aa19.25■□□□□ 0.67
CLN3-203ENST00000357806 LENG9Q96B70 501 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms