RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.26□□□□□ -0.77
UPF2-202ENST00000357604 PCDHA10Q9Y5I2 948 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 CARNS1A5YM72 827 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 CCDC169A6NNP5 214 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 KIF28PB7ZC32 967 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 PIK3CDO00329 1044 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 SEC24BO95487 1268 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 P4HBP07237 508 aaKnown RBP10.26□□□□□ -0.77
UPF2-202ENST00000357604 PRKCZQ05513 592 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 IER5Q5VY09 327 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 GPAT2Q6NUI2 795 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 TLK2Q86UE8 772 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 NLRP7Q8WX94 980 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 PHF20Q9BVI0 1012 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 DICER1Q9UPY3 1922 aaKnown RBP10.26□□□□□ -0.77
UPF2-202ENST00000357604 GAP43P17677 238 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 SFPQP23246 707 aaKnown RBP eCLIP10.26□□□□□ -0.77
UPF2-202ENST00000357604 GUCY1A2P33402 732 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 CA8P35219 290 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 ASIC1P78348 528 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 ALCAMQ13740 583 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 GRB14Q14449 540 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 TUFT1Q9NNX1 390 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 JADE2Q9NQC1 790 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 MOXD2PA6NHM9 499 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 CALUO43852 315 aaPredicted RBP10.26□□□□□ -0.77
UPF2-202ENST00000357604 IDEP14735 1019 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 PPFIA1Q13136 1202 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 DRC7Q8IY82 874 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 ABI1Q8IZP0 508 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 C2orf40Q9H1Z8 148 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 Q9Y3F1 56 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.25□□□□□ -0.77
UPF2-202ENST00000357604 KRT13P13646 458 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 EPHA7Q15375 998 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 Q4G0T1 1027 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 PGBD1Q96JS3 809 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 TCHPQ9BT92 498 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.25□□□□□ -0.77
UPF2-202ENST00000357604 PTPN22Q9Y2R2 807 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 ARHGEF37A1IGU5 675 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 SYT1P21579 422 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 PHKA2P46019 1235 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 FMR1Q06787 632 aaKnown RBP eCLIP10.25□□□□□ -0.772e-10■■□□□ 12.8
UPF2-202ENST00000357604 FSCN1Q16658 493 aaKnown RBP10.25□□□□□ -0.77
UPF2-202ENST00000357604 KYAT1Q16773 422 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 NOM1Q5C9Z4 860 aaKnown RBP10.25□□□□□ -0.77
UPF2-202ENST00000357604 FBXO16Q8IX29 292 aaPredicted RBP10.25□□□□□ -0.77
UPF2-202ENST00000357604 CPVLQ9H3G5 476 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 IPO5O00410 1097 aaKnown RBP10.25□□□□□ -0.77
UPF2-202ENST00000357604 XPOTO43592 962 aaKnown RBP10.25□□□□□ -0.77
UPF2-202ENST00000357604 HBP1O60381 514 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 TECP42680 631 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 STAT5BP51692 787 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 CNNM4Q6P4Q7 775 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 HS2ST1Q7LGA3 356 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 MCPH1Q8NEM0 835 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 GOLGA5Q8TBA6 731 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 ZBED2Q9BTP6 218 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 NUP62CLQ9H1M0 184 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 A1CFQ9NQ94 594 aaKnown RBP10.25□□□□□ -0.77
UPF2-202ENST00000357604 GAS2O43903 313 aaKnown RBP10.25□□□□□ -0.77
UPF2-202ENST00000357604 EVI5O60447 810 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 STX10O60499 249 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 XRCC5P13010 732 aaKnown RBP10.25□□□□□ -0.77
UPF2-202ENST00000357604 CCL5P13501 91 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 MUTP22033 750 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 SREBF1P36956 1147 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 IRF5Q13568 498 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 MYSM1Q5VVJ2 828 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 C17orf99Q6UX52 265 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 CEP170P1Q96L14 293 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 GCOM2Q9BZD3 368 aaPredicted RBP10.25□□□□□ -0.77
UPF2-202ENST00000357604 C11orf49Q9H6J7 331 aa10.25□□□□□ -0.77
UPF2-202ENST00000357604 SMTNL1A8MU46 457 aa10.24□□□□□ -0.77
UPF2-202ENST00000357604 DESP17661 470 aa10.24□□□□□ -0.77
UPF2-202ENST00000357604 PLCB2Q00722 1185 aa10.24□□□□□ -0.77
UPF2-202ENST00000357604 METTL7BQ6UX53 244 aa10.24□□□□□ -0.77
UPF2-202ENST00000357604 FAM43BQ6ZT52 329 aaPredicted RBP10.24□□□□□ -0.77
UPF2-202ENST00000357604 DISC1Q9NRI5 854 aa10.24□□□□□ -0.77
UPF2-202ENST00000357604 RBPJLQ9UBG7 517 aa10.24□□□□□ -0.77
UPF2-202ENST00000357604 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.24□□□□□ -0.77
UPF2-202ENST00000357604 A0A1W2PRG0 241 aa10.24□□□□□ -0.77
UPF2-202ENST00000357604 IGF2BP3O00425 579 aaKnown RBP eCLIP10.24□□□□□ -0.77
UPF2-202ENST00000357604 PRPF40AO75400 957 aaKnown RBP10.24□□□□□ -0.77
UPF2-202ENST00000357604 FARP2O94887 1054 aaPredicted RBP10.24□□□□□ -0.77
UPF2-202ENST00000357604 PARNO95453 639 aaKnown RBP10.24□□□□□ -0.77
UPF2-202ENST00000357604 CYFIP1Q7L576 1253 aa10.24□□□□□ -0.77
UPF2-202ENST00000357604 URGCPQ8TCY9 931 aa10.24□□□□□ -0.77
UPF2-202ENST00000357604 MTRQ99707 1265 aa10.24□□□□□ -0.77
UPF2-202ENST00000357604 STK17AQ9UEE5 414 aa10.24□□□□□ -0.77
UPF2-202ENST00000357604 ATP11BQ9Y2G3 1177 aa10.24□□□□□ -0.77
UPF2-202ENST00000357604 SEPT4O43236 478 aa10.24□□□□□ -0.77
UPF2-202ENST00000357604 RPL13P26373 211 aaKnown RBP10.24□□□□□ -0.77
UPF2-202ENST00000357604 DLK2Q6UY11 383 aa10.24□□□□□ -0.77
UPF2-202ENST00000357604 TMEM199Q8N511 208 aa10.24□□□□□ -0.77
UPF2-202ENST00000357604 TSEN34Q9BSV6 310 aaKnown RBP10.24□□□□□ -0.77
UPF2-202ENST00000357604 BICDL2A1A5D9 508 aa10.24□□□□□ -0.77
UPF2-202ENST00000357604 PPP6R2O75170 966 aa10.24□□□□□ -0.77
UPF2-202ENST00000357604 SLC30A10Q6XR72 485 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms