RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 THAP9Q9H5L6 903 aa17.21■□□□□ 0.35
RTN3-205ENST00000356000 ZNHIT6Q9NWK9 470 aaKnown RBP17.21■□□□□ 0.35
RTN3-205ENST00000356000 C4AP0C0L4 1744 aa17.21■□□□□ 0.35
RTN3-205ENST00000356000 C4BP0C0L5 1744 aa17.21■□□□□ 0.35
RTN3-205ENST00000356000 SART1O43290 800 aaKnown RBP17.2■□□□□ 0.34
RTN3-205ENST00000356000 MMEP08473 750 aa17.2■□□□□ 0.34
RTN3-205ENST00000356000 TPBGLP0DKB5 382 aa17.2■□□□□ 0.34
RTN3-205ENST00000356000 PAX3P23760 479 aa17.2■□□□□ 0.34
RTN3-205ENST00000356000 NLRP5P59047 1200 aa17.2■□□□□ 0.34
RTN3-205ENST00000356000 MFSD4BQ5TF39 518 aa17.2■□□□□ 0.34
RTN3-205ENST00000356000 CHADLQ6NUI6 762 aa17.2■□□□□ 0.34
RTN3-205ENST00000356000 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP17.2■□□□□ 0.34
RTN3-205ENST00000356000 RNF168Q8IYW5 571 aaPredicted RBP17.2■□□□□ 0.34
RTN3-205ENST00000356000 KCNH5Q8NCM2 988 aa17.2■□□□□ 0.34
RTN3-205ENST00000356000 DNAJC9Q8WXX5 260 aa17.2■□□□□ 0.34
RTN3-205ENST00000356000 MS4A14Q96JA4 679 aa17.2■□□□□ 0.34
RTN3-205ENST00000356000 CIDEBQ9UHD4 219 aa17.2■□□□□ 0.34
RTN3-205ENST00000356000 RWDD2AQ9UIY3 292 aa17.2■□□□□ 0.34
RTN3-205ENST00000356000 MYH7BA7E2Y1 1941 aa17.2■□□□□ 0.34
RTN3-205ENST00000356000 E2F6O75461 281 aa17.2■□□□□ 0.34
RTN3-205ENST00000356000 CDK17Q00537 523 aa17.2■□□□□ 0.34
RTN3-205ENST00000356000 STK32AQ8WU08 396 aa17.2■□□□□ 0.34
RTN3-205ENST00000356000 CCDC134Q9H6E4 229 aa17.2■□□□□ 0.34
RTN3-205ENST00000356000 OAS1P00973 400 aaKnown RBP17.19■□□□□ 0.34
RTN3-205ENST00000356000 VIL1P09327 827 aaKnown RBP17.19■□□□□ 0.34
RTN3-205ENST00000356000 MTMR3Q13615 1198 aa17.19■□□□□ 0.34
RTN3-205ENST00000356000 EPHA10Q5JZY3 1008 aa17.19■□□□□ 0.34
RTN3-205ENST00000356000 DDX46Q7L014 1031 aaKnown RBP17.19■□□□□ 0.34
RTN3-205ENST00000356000 ZNF507Q8TCN5 953 aa17.19■□□□□ 0.34
RTN3-205ENST00000356000 LTV1Q96GA3 475 aaPredicted RBP17.19■□□□□ 0.34
RTN3-205ENST00000356000 KRT12Q99456 494 aa17.19■□□□□ 0.34
RTN3-205ENST00000356000 SPATA7Q9P0W8 599 aa17.19■□□□□ 0.34
RTN3-205ENST00000356000 MRC1P22897 1456 aa17.19■□□□□ 0.34
RTN3-205ENST00000356000 NCK2O43639 380 aa17.19■□□□□ 0.34
RTN3-205ENST00000356000 COBLO75128 1261 aa17.19■□□□□ 0.34
RTN3-205ENST00000356000 PEX11AO75192 247 aa17.19■□□□□ 0.34
RTN3-205ENST00000356000 CHN1P15882 459 aa17.19■□□□□ 0.34
RTN3-205ENST00000356000 POLD1P28340 1107 aa17.19■□□□□ 0.34
RTN3-205ENST00000356000 ZC3H6P61129 1189 aaKnown RBP17.19■□□□□ 0.34
RTN3-205ENST00000356000 SF3A3Q12874 501 aaKnown RBP eCLIP17.19■□□□□ 0.34
RTN3-205ENST00000356000 TMED1Q13445 227 aa17.19■□□□□ 0.34
RTN3-205ENST00000356000 SAFBQ15424 915 aaKnown RBP eCLIP17.19■□□□□ 0.34
RTN3-205ENST00000356000 SPA17Q15506 151 aa17.19■□□□□ 0.34
RTN3-205ENST00000356000 ARHGAP18Q8N392 663 aa17.19■□□□□ 0.34
RTN3-205ENST00000356000 ASAP3Q8TDY4 903 aa17.19■□□□□ 0.34
RTN3-205ENST00000356000 UCMAQ8WVF2 138 aa17.19■□□□□ 0.34
RTN3-205ENST00000356000 CTTNBP2NLQ9P2B4 639 aa17.19■□□□□ 0.34
RTN3-205ENST00000356000 COL18A1P39060 1754 aa17.19■□□□□ 0.34
RTN3-205ENST00000356000 LGALS16A8MUM7 142 aa17.18■□□□□ 0.34
RTN3-205ENST00000356000 SNX3O60493 162 aa17.18■□□□□ 0.34
RTN3-205ENST00000356000 CUL1Q13616 776 aa17.18■□□□□ 0.34
RTN3-205ENST00000356000 RNF10Q8N5U6 811 aaKnown RBP17.18■□□□□ 0.34
RTN3-205ENST00000356000 ABTB2Q8N961 1025 aa17.18■□□□□ 0.34
RTN3-205ENST00000356000 KLHDC4Q8TBB5 520 aa17.18■□□□□ 0.34
RTN3-205ENST00000356000 TTYH3Q9C0H2 523 aa17.18■□□□□ 0.34
RTN3-205ENST00000356000 NSRP1Q9H0G5 558 aaKnown RBP17.18■□□□□ 0.34
RTN3-205ENST00000356000 CYP39A1Q9NYL5 469 aa17.18■□□□□ 0.34
RTN3-205ENST00000356000 TUBGCP4Q9UGJ1 667 aa17.18■□□□□ 0.34
RTN3-205ENST00000356000 GRID2IPA4D2P6 1211 aa17.18■□□□□ 0.34
RTN3-205ENST00000356000 AFMP43652 599 aa17.18■□□□□ 0.34
RTN3-205ENST00000356000 USP46P62068 366 aa17.18■□□□□ 0.34
RTN3-205ENST00000356000 HLTFQ14527 1009 aaKnown RBP eCLIP17.18■□□□□ 0.34
RTN3-205ENST00000356000 KRT71Q3SY84 523 aa17.18■□□□□ 0.34
RTN3-205ENST00000356000 USHBP1Q8N6Y0 703 aa17.18■□□□□ 0.34
RTN3-205ENST00000356000 ENDOVQ8N8Q3 282 aaKnown RBP17.18■□□□□ 0.34
RTN3-205ENST00000356000 PROCA1Q8NCQ7 364 aaPredicted RBP17.18■□□□□ 0.34
RTN3-205ENST00000356000 SMC1BQ8NDV3 1235 aa17.18■□□□□ 0.34
RTN3-205ENST00000356000 IQCDQ96DY2 449 aa17.18■□□□□ 0.34
RTN3-205ENST00000356000 PAGE5Q96GU1 130 aa17.18■□□□□ 0.34
RTN3-205ENST00000356000 RAD51CO43502 376 aa17.17■□□□□ 0.34
RTN3-205ENST00000356000 SHBGP04278 402 aa17.17■□□□□ 0.34
RTN3-205ENST00000356000 USP49Q70CQ1 688 aa17.17■□□□□ 0.34
RTN3-205ENST00000356000 RAB11FIP4Q86YS3 637 aa17.17■□□□□ 0.34
RTN3-205ENST00000356000 TMTC2Q8N394 836 aa17.17■□□□□ 0.34
RTN3-205ENST00000356000 HELLSQ9NRZ9 838 aa17.17■□□□□ 0.34
RTN3-205ENST00000356000 AGPAT5Q9NUQ2 364 aa17.17■□□□□ 0.34
RTN3-205ENST00000356000 C9orf78Q9NZ63 289 aaPredicted RBP17.17■□□□□ 0.34
RTN3-205ENST00000356000 SRPRBQ9Y5M8 271 aaKnown RBP17.17■□□□□ 0.34
RTN3-205ENST00000356000 PFDN1O60925 122 aa17.17■□□□□ 0.34
RTN3-205ENST00000356000 HSPD1P10809 573 aaKnown RBP17.17■□□□□ 0.34
RTN3-205ENST00000356000 CYP11B2P19099 503 aa17.17■□□□□ 0.34
RTN3-205ENST00000356000 CASP1P29466 404 aa17.17■□□□□ 0.34
RTN3-205ENST00000356000 ERVK-9P63128 1117 aa17.17■□□□□ 0.34
RTN3-205ENST00000356000 MCL1Q07820 350 aa17.17■□□□□ 0.34
RTN3-205ENST00000356000 ZBTB8BQ8NAP8 495 aaPredicted RBP17.17■□□□□ 0.34
RTN3-205ENST00000356000 ATP8B4Q8TF62 1192 aa17.17■□□□□ 0.34
RTN3-205ENST00000356000 RAB3IPQ96QF0 476 aaPredicted RBP17.17■□□□□ 0.34
RTN3-205ENST00000356000 BABAM1Q9NWV8 329 aa17.17■□□□□ 0.34
RTN3-205ENST00000356000 FBXL5Q9UKA1 691 aa17.17■□□□□ 0.34
RTN3-205ENST00000356000 PCDHA13Q9Y5I0 950 aa17.17■□□□□ 0.34
RTN3-205ENST00000356000 CCNB1P14635 433 aa17.17■□□□□ 0.34
RTN3-205ENST00000356000 SKIV2L2P42285 1042 aaKnown RBP17.17■□□□□ 0.34
RTN3-205ENST00000356000 TOB1P50616 345 aaPredicted RBP17.17■□□□□ 0.34
RTN3-205ENST00000356000 CBX3Q13185 183 aa17.17■□□□□ 0.34
RTN3-205ENST00000356000 RBBP8NLQ8NC74 664 aaPredicted RBP17.17■□□□□ 0.34
RTN3-205ENST00000356000 UBLCP1Q8WVY7 318 aaPredicted RBP17.17■□□□□ 0.34
RTN3-205ENST00000356000 NLRP3Q96P20 1036 aa17.17■□□□□ 0.34
RTN3-205ENST00000356000 HAPLN3Q96S86 360 aa17.17■□□□□ 0.34
RTN3-205ENST00000356000 IFIH1Q9BYX4 1025 aaKnown RBP17.17■□□□□ 0.34
RTN3-205ENST00000356000 CARD9Q9H257 536 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 140.6 ms