RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 KLRF2D3W0D1 207 aa24.63■■□□□ 1.53
TRIM28-202ENST00000341753 MDH1P40925 334 aaKnown RBP24.63■■□□□ 1.53
TRIM28-202ENST00000341753 NEK8Q86SG6 692 aa24.63■■□□□ 1.53
TRIM28-202ENST00000341753 DDX42Q86XP3 938 aaKnown RBP eCLIP24.63■■□□□ 1.53
TRIM28-202ENST00000341753 CNBD1Q8NA66 436 aa24.63■■□□□ 1.53
TRIM28-202ENST00000341753 IQCDQ96DY2 449 aa24.63■■□□□ 1.53
TRIM28-202ENST00000341753 PNMA5Q96PV4 448 aa24.63■■□□□ 1.53
TRIM28-202ENST00000341753 NUDT12Q9BQG2 462 aa24.63■■□□□ 1.53
TRIM28-202ENST00000341753 SEMA3FQ13275 785 aa24.63■■□□□ 1.53
TRIM28-202ENST00000341753 UIMC1Q96RL1 719 aa24.63■■□□□ 1.53
TRIM28-202ENST00000341753 LSM14BQ9BX40 385 aaKnown RBP24.63■■□□□ 1.53
TRIM28-202ENST00000341753 TBC1D7Q9P0N9 293 aa24.63■■□□□ 1.53
TRIM28-202ENST00000341753 FSBPO95073 299 aa24.62■■□□□ 1.53
TRIM28-202ENST00000341753 USP8P40818 1118 aa24.62■■□□□ 1.53
TRIM28-202ENST00000341753 PPP1R2P41236 205 aa24.62■■□□□ 1.53
TRIM28-202ENST00000341753 SLC9C1Q4G0N8 1177 aa24.62■■□□□ 1.53
TRIM28-202ENST00000341753 SFMBT2Q5VUG0 894 aa24.62■■□□□ 1.53
TRIM28-202ENST00000341753 UNC13DQ70J99 1090 aa24.62■■□□□ 1.53
TRIM28-202ENST00000341753 TMEM47Q9BQJ4 181 aa24.62■■□□□ 1.53
TRIM28-202ENST00000341753 SBK1Q52WX2 424 aa24.62■■□□□ 1.53
TRIM28-202ENST00000341753 FAM83BQ5T0W9 1011 aa24.62■■□□□ 1.53
TRIM28-202ENST00000341753 C12orf60Q5U649 245 aa24.62■■□□□ 1.53
TRIM28-202ENST00000341753 KCNK18Q7Z418 384 aa24.62■■□□□ 1.53
TRIM28-202ENST00000341753 RNF10Q8N5U6 811 aaKnown RBP24.62■■□□□ 1.53
TRIM28-202ENST00000341753 CDK5RAP3Q96JB5 506 aa24.62■■□□□ 1.53
TRIM28-202ENST00000341753 NOL4O94818 638 aa24.61■■□□□ 1.53
TRIM28-202ENST00000341753 GNAQP50148 359 aa24.61■■□□□ 1.53
TRIM28-202ENST00000341753 ITGB3BPQ13352 177 aaPredicted RBP24.61■■□□□ 1.53
TRIM28-202ENST00000341753 SF3B2Q13435 895 aaKnown RBP24.61■■□□□ 1.53
TRIM28-202ENST00000341753 GRAPQ13588 217 aa24.61■■□□□ 1.53
TRIM28-202ENST00000341753 RAPGEF1Q13905 1077 aa24.61■■□□□ 1.53
TRIM28-202ENST00000341753 KIAA0753Q2KHM9 967 aa24.61■■□□□ 1.53
TRIM28-202ENST00000341753 CCDC40Q4G0X9 1142 aa24.61■■□□□ 1.53
TRIM28-202ENST00000341753 GRAPLQ8TC17 118 aaPredicted RBP24.61■■□□□ 1.53
TRIM28-202ENST00000341753 LARP4BQ92615 738 aaKnown RBP24.61■■□□□ 1.53
TRIM28-202ENST00000341753 BCCIPQ9P287 314 aaKnown RBP eCLIP24.61■■□□□ 1.53
TRIM28-202ENST00000341753 ADAMTS1Q9UHI8 967 aa24.61■■□□□ 1.53
TRIM28-202ENST00000341753 A0A087X0T9 212 aa24.61■■□□□ 1.53
TRIM28-202ENST00000341753 FAM228BP0C875 321 aa24.61■■□□□ 1.53
TRIM28-202ENST00000341753 MAP2K2P36507 400 aa24.61■■□□□ 1.53
TRIM28-202ENST00000341753 GPSM2P81274 684 aa24.61■■□□□ 1.53
TRIM28-202ENST00000341753 USP17L2Q6R6M4 530 aa24.61■■□□□ 1.53
TRIM28-202ENST00000341753 KRT25Q7Z3Z0 450 aa24.61■■□□□ 1.53
TRIM28-202ENST00000341753 GJA10Q969M2 543 aa24.61■■□□□ 1.53
TRIM28-202ENST00000341753 INPP4AQ96PE3 977 aaPredicted RBP24.61■■□□□ 1.53
TRIM28-202ENST00000341753 ZMYND12Q9H0C1 365 aa24.61■■□□□ 1.53
TRIM28-202ENST00000341753 MYH1P12882 1939 aa24.61■■□□□ 1.53
TRIM28-202ENST00000341753 SSU72P8A0A1W2PR75 194 aa24.6■■□□□ 1.53
TRIM28-202ENST00000341753 A6NNZ2 444 aa24.6■■□□□ 1.53
TRIM28-202ENST00000341753 TUBB8Q3ZCM7 444 aa24.6■■□□□ 1.53
TRIM28-202ENST00000341753 TSKSQ9UJT2 592 aa24.6■■□□□ 1.53
TRIM28-202ENST00000341753 TRAF5O00463 557 aa24.6■■□□□ 1.53
TRIM28-202ENST00000341753 ERVK-9P63128 1117 aa24.6■■□□□ 1.53
TRIM28-202ENST00000341753 NAB2Q15742 525 aa24.6■■□□□ 1.53
TRIM28-202ENST00000341753 CDC37Q16543 378 aaPredicted RBP24.6■■□□□ 1.53
TRIM28-202ENST00000341753 GALNT17Q6IS24 598 aa24.6■■□□□ 1.53
TRIM28-202ENST00000341753 GUF1Q8N442 669 aaKnown RBP24.6■■□□□ 1.53
TRIM28-202ENST00000341753 FAM133AQ8N9E0 248 aa24.6■■□□□ 1.53
TRIM28-202ENST00000341753 DDX12PQ92771 950 aa24.6■■□□□ 1.53
TRIM28-202ENST00000341753 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.59■■□□□ 1.53
TRIM28-202ENST00000341753 MEI1Q5TIA1 1274 aa24.59■■□□□ 1.53
TRIM28-202ENST00000341753 MICALCLQ6ZW33 695 aa24.59■■□□□ 1.53
TRIM28-202ENST00000341753 FGFBP2Q9BYJ0 223 aa24.59■■□□□ 1.53
TRIM28-202ENST00000341753 KCNK3O14649 394 aa24.59■■□□□ 1.53
TRIM28-202ENST00000341753 SLC37A4O43826 429 aa24.59■■□□□ 1.53
TRIM28-202ENST00000341753 TMOD1P28289 359 aa24.59■■□□□ 1.53
TRIM28-202ENST00000341753 SETQ01105 290 aaPredicted RBP24.59■■□□□ 1.53
TRIM28-202ENST00000341753 PRR5LQ6MZQ0 368 aa24.59■■□□□ 1.53
TRIM28-202ENST00000341753 NELFCDQ8IXH7 590 aa24.59■■□□□ 1.53
TRIM28-202ENST00000341753 AP1M1Q9BXS5 423 aa24.59■■□□□ 1.53
TRIM28-202ENST00000341753 GRID2IPA4D2P6 1211 aa24.58■■□□□ 1.53
TRIM28-202ENST00000341753 PALM3A6NDB9 673 aaPredicted RBP24.58■■□□□ 1.53
TRIM28-202ENST00000341753 TDP2O95551 362 aa24.58■■□□□ 1.53
TRIM28-202ENST00000341753 SERPING1P05155 500 aa24.58■■□□□ 1.53
TRIM28-202ENST00000341753 CCDC13Q8IYE1 715 aa24.58■■□□□ 1.53
TRIM28-202ENST00000341753 MREGQ8N565 214 aa24.58■■□□□ 1.53
TRIM28-202ENST00000341753 UFL1O94874 794 aa24.58■■□□□ 1.53
TRIM28-202ENST00000341753 FGFR1OPO95684 399 aaKnown RBP24.58■■□□□ 1.53
TRIM28-202ENST00000341753 ZNF444Q8N0Y2 327 aaPredicted RBP24.58■■□□□ 1.53
TRIM28-202ENST00000341753 UBA5Q9GZZ9 404 aa24.58■■□□□ 1.53
TRIM28-202ENST00000341753 CXorf56Q9H5V9 222 aa24.58■■□□□ 1.53
TRIM28-202ENST00000341753 C6orf50Q9HD87 102 aa24.58■■□□□ 1.53
TRIM28-202ENST00000341753 SSBP05455 408 aaKnown RBP eCLIP24.57■■□□□ 1.52
TRIM28-202ENST00000341753 HSD17B3P37058 310 aa24.57■■□□□ 1.52
TRIM28-202ENST00000341753 GSCP56915 257 aaPredicted RBP24.57■■□□□ 1.52
TRIM28-202ENST00000341753 LRRC63Q05C16 580 aa24.57■■□□□ 1.52
TRIM28-202ENST00000341753 CALCRLQ16602 461 aa24.57■■□□□ 1.52
TRIM28-202ENST00000341753 SPRED3Q2MJR0 410 aa24.57■■□□□ 1.52
TRIM28-202ENST00000341753 COBLL1Q53SF7 1204 aa24.57■■□□□ 1.52
TRIM28-202ENST00000341753 SPTY2D1Q68D10 685 aaPredicted RBP24.57■■□□□ 1.52
TRIM28-202ENST00000341753 CD302Q8IX05 232 aa24.57■■□□□ 1.52
TRIM28-202ENST00000341753 USP38Q8NB14 1042 aa24.57■■□□□ 1.52
TRIM28-202ENST00000341753 WHAMMQ8TF30 809 aa24.57■■□□□ 1.52
TRIM28-202ENST00000341753 PIGSQ96S52 555 aa24.57■■□□□ 1.52
TRIM28-202ENST00000341753 CEP72Q9P209 647 aa24.57■■□□□ 1.52
TRIM28-202ENST00000341753 RNF14Q9UBS8 474 aa24.57■■□□□ 1.52
TRIM28-202ENST00000341753 COL24A1Q17RW2 1714 aa24.57■■□□□ 1.52
TRIM28-202ENST00000341753 ATXN2Q99700 1313 aaKnown RBP24.57■■□□□ 1.52
TRIM28-202ENST00000341753 HMGB1P1B2RPK0 211 aaPredicted RBP24.57■■□□□ 1.52
TRIM28-202ENST00000341753 RBAK-RBAKDNI3L0D1 243 aa24.57■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms