RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 YIPF2Q9BWQ6 316 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 TXNDC16Q9P2K2 825 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 PRR23AA6NEV1 266 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 FOXN1O15353 648 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 CAMTA2O94983 1202 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 KRT76Q01546 638 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 MTMR1Q13613 665 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 MGAT5BQ3V5L5 792 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 SV2BQ7L1I2 683 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.24□□□□□ -0.93
HMGB1-203ENST00000341423 ZSCAN16Q9H4T2 348 aaPredicted RBP9.24□□□□□ -0.93
HMGB1-203ENST00000341423 SUDS3Q9H7L9 328 aaPredicted RBP9.24□□□□□ -0.93
HMGB1-203ENST00000341423 PCDHB8Q9UN66 801 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 B4E1Z4 1266 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 PYGMP11217 842 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 PDE6AP16499 860 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 ADORA2AP29274 412 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 GUCY1B3Q02153 619 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 MEI1Q5TIA1 1274 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 FBXO10Q9UK96 956 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 NKX1-1Q15270 411 aaPredicted RBP9.24□□□□□ -0.93
HMGB1-203ENST00000341423 CDC37Q16543 378 aaPredicted RBP9.24□□□□□ -0.93
HMGB1-203ENST00000341423 CALCRLQ16602 461 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 RNF187Q5TA31 235 aaPredicted RBP9.24□□□□□ -0.93
HMGB1-203ENST00000341423 TMEM164Q5U3C3 297 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 PIK3AP1Q6ZUJ8 805 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 RAB42Q8N4Z0 105 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 MAFAQ8NHW3 353 aaPredicted RBP9.24□□□□□ -0.93
HMGB1-203ENST00000341423 SUCLG2Q96I99 432 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 SAMD11Q96NU1 681 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 NT5C3AQ9H0P0 336 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 SAGE1Q9NXZ1 904 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 LRWD1Q9UFC0 647 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 DDX20Q9UHI6 824 aaKnown RBP9.24□□□□□ -0.93
HMGB1-203ENST00000341423 AK5Q9Y6K8 562 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 SMARCA5O60264 1052 aaPredicted RBP9.24□□□□□ -0.93
HMGB1-203ENST00000341423 MYBP10242 640 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 MCM7P33993 719 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 PLCD1P51178 756 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 PLCB3Q01970 1234 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 MECOMQ03112 1051 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 CCDC144BQ3MJ40 725 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 C16orf59Q7L2K0 433 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 PALM2Q8IXS6 379 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 SNX29Q8TEQ0 813 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 SLITRK1Q96PX8 696 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 FTHL17Q9BXU8 183 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 TBC1D22BQ9NU19 505 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 DIP2CQ9Y2E4 1556 aa9.24□□□□□ -0.93
HMGB1-203ENST00000341423 IGSF3O75054 1194 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 MYBL2P10244 700 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 STAT5BP51692 787 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 FBXW4P57775 412 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 ADCY1Q08828 1119 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 MTMR3Q13615 1198 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 RCSD1Q6JBY9 416 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 LRRC31Q6UY01 552 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 C8orf58Q8NAV2 365 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 TTLL11Q8NHH1 800 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 OXCT2Q9BYC2 517 aaPredicted RBP9.23□□□□□ -0.93
HMGB1-203ENST00000341423 ASCC2Q9H1I8 757 aaPredicted RBP9.23□□□□□ -0.93
HMGB1-203ENST00000341423 NDRG2Q9UN36 371 aaKnown RBP9.23□□□□□ -0.93
HMGB1-203ENST00000341423 V9GY48 417 aaPredicted RBP9.23□□□□□ -0.93
HMGB1-203ENST00000341423 KANSL1LA0AUZ9 987 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 WNT10BO00744 389 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 KDM1AO60341 852 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 PFKMP08237 780 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 ABCB4P21439 1286 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 SLC16A2P36021 539 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 GJC1P36383 396 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 PPP2R3AQ06190 1150 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 VGLL4Q14135 290 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 CEP135Q66GS9 1140 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 KDELC2Q7Z4H8 507 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 PBXIP1Q96AQ6 731 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 AKT1S1Q96B36 256 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 PHACTR3Q96KR7 559 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 UBN1Q9NPG3 1134 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 SPATA6Q9NWH7 488 aaPredicted RBP9.23□□□□□ -0.93
HMGB1-203ENST00000341423 ATG13O75143 517 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 ASMTLO95671 621 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 INPP5BP32019 993 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 TLE2Q04725 743 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 TRIM50Q86XT4 487 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 TRIM62Q9BVG3 475 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 K7ERI5 159 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 CDK8P49336 464 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 LACTBP83111 547 aaPredicted RBP9.23□□□□□ -0.93
HMGB1-203ENST00000341423 CRHR2Q13324 411 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 SPA17Q15506 151 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 TTBK2Q6IQ55 1244 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 SRGAP1Q7Z6B7 1085 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 BBXQ8WY36 941 aaPredicted RBP9.23□□□□□ -0.93
HMGB1-203ENST00000341423 TBC1D31Q96DN5 1066 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 ZNF560Q96MR9 790 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 XPO6Q96QU8 1125 aaKnown RBP9.23□□□□□ -0.93
HMGB1-203ENST00000341423 MTRQ99707 1265 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 MST1RQ04912 1400 aa9.23□□□□□ -0.93
HMGB1-203ENST00000341423 F5H6K3 240 aa9.22□□□□□ -0.93
HMGB1-203ENST00000341423 TLR2O60603 784 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms