RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 TBCKQ8TEA7 893 aa13.66□□□□□ -0.22
SDC3-201ENST00000336798 ATP6V0A1Q93050 837 aa13.66□□□□□ -0.22
SDC3-201ENST00000336798 TLK1Q9UKI8 766 aa13.66□□□□□ -0.22
SDC3-201ENST00000336798 SFI1A8K8P3 1242 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 PHKG2P15735 406 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 DSTYKQ6XUX3 929 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 PDCD6IPQ8WUM4 868 aaKnown RBP13.65□□□□□ -0.22
SDC3-201ENST00000336798 CCDC138Q96M89 665 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 NRBP1Q9UHY1 535 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 SUGT1Q9Y2Z0 365 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 TRAPPC8Q9Y2L5 1435 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 ERVV-2B6SEH9 535 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 HOXB7P09629 217 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 IFT88Q13099 833 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 DNAJC24Q6P3W2 148 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 TRIM67Q6ZTA4 783 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 RNF139Q8WU17 664 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 TTLL1O95922 423 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 PMLP29590 882 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 ELF1P32519 619 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 LONP1P36776 959 aaKnown RBP13.65□□□□□ -0.22
SDC3-201ENST00000336798 USP17L2Q6R6M4 530 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 PCGF5Q86SE9 256 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 CNKSR1Q969H4 720 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 IQCDQ96DY2 449 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 PCDHA4Q9UN74 947 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 CYP2D7A0A087X1C5 515 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 ZBTB22O15209 634 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 ZNF445P59923 1031 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 C10orf76Q5T2E6 689 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 ABTB1Q969K4 478 aaPredicted RBP13.65□□□□□ -0.22
SDC3-201ENST00000336798 ASAP1Q9ULH1 1129 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 CMA1P23946 247 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 CTTNQ14247 550 aaKnown RBP13.65□□□□□ -0.22
SDC3-201ENST00000336798 BBOF1Q8ND07 529 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 FTOQ9C0B1 505 aaKnown RBP eCLIP13.65□□□□□ -0.22
SDC3-201ENST00000336798 GCNT4Q9P109 453 aa13.65□□□□□ -0.22
SDC3-201ENST00000336798 SOS2Q07890 1332 aaPredicted RBP13.64□□□□□ -0.23
SDC3-201ENST00000336798 NFX1Q12986 1120 aaKnown RBP13.64□□□□□ -0.23
SDC3-201ENST00000336798 E2F5Q15329 346 aa13.64□□□□□ -0.23
SDC3-201ENST00000336798 NACC1Q96RE7 527 aa13.64□□□□□ -0.23
SDC3-201ENST00000336798 PI4K2BG5E9Z4 385 aa13.64□□□□□ -0.23
SDC3-201ENST00000336798 TCP1P17987 556 aaKnown RBP13.64□□□□□ -0.23
SDC3-201ENST00000336798 MRPS25P82663 173 aaKnown RBP13.64□□□□□ -0.23
SDC3-201ENST00000336798 ACBD5Q5T8D3 534 aaPredicted RBP13.64□□□□□ -0.23
SDC3-201ENST00000336798 CACTINQ8WUQ7 758 aaKnown RBP13.64□□□□□ -0.23
SDC3-201ENST00000336798 GCNAQ96QF7 691 aa13.64□□□□□ -0.23
SDC3-201ENST00000336798 ZNF215Q9UL58 517 aaPredicted RBP13.64□□□□□ -0.23
SDC3-201ENST00000336798 ZNF394Q53GI3 561 aa13.64□□□□□ -0.23
SDC3-201ENST00000336798 AP1M1Q9BXS5 423 aa13.64□□□□□ -0.23
SDC3-201ENST00000336798 PPP2R5EQ16537 467 aa13.64□□□□□ -0.23
SDC3-201ENST00000336798 NUDCD1Q96RS6 583 aa13.64□□□□□ -0.23
SDC3-201ENST00000336798 MMTAG2Q9BU76 263 aaKnown RBP13.64□□□□□ -0.23
SDC3-201ENST00000336798 TRAPPC10P48553 1259 aa13.64□□□□□ -0.23
SDC3-201ENST00000336798 SLMAPQ14BN4 828 aa13.64□□□□□ -0.23
SDC3-201ENST00000336798 ZNF518AQ6AHZ1 1483 aa13.64□□□□□ -0.23
SDC3-201ENST00000336798 PRPSAP2O60256 369 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 PLS3P13797 630 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 RANBP1P43487 201 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 STAT2P52630 851 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 ARMC9Q7Z3E5 817 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 SLC13A4Q9UKG4 626 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 LRRD1A4D1F6 860 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 ESRRBO95718 433 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 USP17L8P0C7I0 530 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 EIF2AK2P19525 551 aaKnown RBP13.63□□□□□ -0.23
SDC3-201ENST00000336798 SLC7A5Q01650 507 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 SNCBQ16143 134 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 ANKRD20A4Q4UJ75 823 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 ANKRD20A8PQ5CZ79 823 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 ANKRD20A2Q5SQ80 823 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 ANKRD20A1Q5TYW2 823 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 C1orf228Q6PIY5 440 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 FAM196AQ6ZSG2 479 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 HIPK4Q8NE63 616 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 MAML1Q92585 1016 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 FBXL13Q8NEE6 735 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 TESK2Q96S53 571 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 EPS15L1Q9UBC2 864 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 PNMA2Q9UL42 364 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 MTMR6Q9Y217 621 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 BPIFB4P59827 614 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 OR6B3Q8NGW1 331 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 TTC1Q99614 292 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 JPH2Q9BR39 696 aaPredicted RBP13.63□□□□□ -0.23
SDC3-201ENST00000336798 GINM1Q9NU53 330 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 XDHP47989 1333 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 EDC4Q6P2E9 1401 aaKnown RBP13.63□□□□□ -0.23
SDC3-201ENST00000336798 LOC102724428A0A0B4J2F2 783 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 FMNL1O95466 1100 aaPredicted RBP13.63□□□□□ -0.23
SDC3-201ENST00000336798 SIK1P57059 783 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 ART3Q13508 389 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 ICE2Q659A1 982 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 MCTP2Q6DN12 878 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 ACRBPQ8NEB7 543 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 TCP11Q8WWU5 503 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.63□□□□□ -0.23
SDC3-201ENST00000336798 ZNF668Q96K58 619 aaPredicted RBP13.63□□□□□ -0.23
SDC3-201ENST00000336798 PPP1R13BQ96KQ4 1090 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 USP44Q9H0E7 712 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms