RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 SMC2O95347 1197 aa16.75■□□□□ 0.27
CCDC88C-202ENST00000334448 CNTN2Q02246 1040 aa16.75■□□□□ 0.27
CCDC88C-202ENST00000334448 ITGB3BPQ13352 177 aaPredicted RBP16.75■□□□□ 0.27
CCDC88C-202ENST00000334448 GNPTABQ3T906 1256 aa16.75■□□□□ 0.27
CCDC88C-202ENST00000334448 L1TD1Q5T7N2 865 aaKnown RBP16.75■□□□□ 0.27
CCDC88C-202ENST00000334448 RDM1Q8NG50 284 aa16.75■□□□□ 0.27
CCDC88C-202ENST00000334448 GSDMAQ96QA5 445 aa16.75■□□□□ 0.27
CCDC88C-202ENST00000334448 MMP19Q99542 508 aa16.75■□□□□ 0.27
CCDC88C-202ENST00000334448 MPHOSPH6Q99547 160 aaKnown RBP16.75■□□□□ 0.27
CCDC88C-202ENST00000334448 HSD17B14Q9BPX1 270 aa16.75■□□□□ 0.27
CCDC88C-202ENST00000334448 NUDT12Q9BQG2 462 aa16.75■□□□□ 0.27
CCDC88C-202ENST00000334448 PORCNQ9H237 461 aa16.75■□□□□ 0.27
CCDC88C-202ENST00000334448 TUFT1Q9NNX1 390 aa16.75■□□□□ 0.27
CCDC88C-202ENST00000334448 ZNF236Q9UL36 1845 aa16.75■□□□□ 0.27
CCDC88C-202ENST00000334448 SPATA31C2B4DYI2 1134 aa16.74■□□□□ 0.27
CCDC88C-202ENST00000334448 PRR29P0C7W0 189 aa16.74■□□□□ 0.27
CCDC88C-202ENST00000334448 SPATA31C1P0DKV0 1188 aa16.74■□□□□ 0.27
CCDC88C-202ENST00000334448 MYCLP12524 364 aaPredicted RBP16.74■□□□□ 0.27
CCDC88C-202ENST00000334448 MAPK4P31152 587 aa16.74■□□□□ 0.27
CCDC88C-202ENST00000334448 TM4SF4P48230 202 aa16.74■□□□□ 0.27
CCDC88C-202ENST00000334448 NLRP12P59046 1061 aa16.74■□□□□ 0.27
CCDC88C-202ENST00000334448 EPHA7Q15375 998 aa16.74■□□□□ 0.27
CCDC88C-202ENST00000334448 STXBP2Q15833 593 aa16.74■□□□□ 0.27
CCDC88C-202ENST00000334448 ZNF467Q7Z7K2 595 aaPredicted RBP16.74■□□□□ 0.27
CCDC88C-202ENST00000334448 IFNL1Q8IU54 200 aa16.74■□□□□ 0.27
CCDC88C-202ENST00000334448 ANKRD13CQ8N6S4 541 aa16.74■□□□□ 0.27
CCDC88C-202ENST00000334448 RASSF8Q8NHQ8 419 aa16.74■□□□□ 0.27
CCDC88C-202ENST00000334448 FAM200AQ8TCP9 573 aa16.74■□□□□ 0.27
CCDC88C-202ENST00000334448 RAD54LQ92698 747 aa16.74■□□□□ 0.27
CCDC88C-202ENST00000334448 SMARCE1Q969G3 411 aa16.74■□□□□ 0.27
CCDC88C-202ENST00000334448 CDK5RAP3Q96JB5 506 aa16.74■□□□□ 0.27
CCDC88C-202ENST00000334448 SENP7Q9BQF6 1050 aa16.74■□□□□ 0.27
CCDC88C-202ENST00000334448 BPIFA3Q9BQP9 254 aa16.74■□□□□ 0.27
CCDC88C-202ENST00000334448 RBSNQ9H1K0 784 aa16.74■□□□□ 0.27
CCDC88C-202ENST00000334448 R3HDMLQ9H3Y0 253 aa16.74■□□□□ 0.27
CCDC88C-202ENST00000334448 GRPEL1Q9HAV7 217 aa16.74■□□□□ 0.27
CCDC88C-202ENST00000334448 EML1O00423 815 aa16.73■□□□□ 0.27
CCDC88C-202ENST00000334448 KCNA2P16389 499 aa16.73■□□□□ 0.27
CCDC88C-202ENST00000334448 CCT6AP40227 531 aaKnown RBP16.73■□□□□ 0.27
CCDC88C-202ENST00000334448 AMPD3Q01432 767 aa16.73■□□□□ 0.27
CCDC88C-202ENST00000334448 KRT76Q01546 638 aa16.73■□□□□ 0.27
CCDC88C-202ENST00000334448 MORC3Q14149 939 aa16.73■□□□□ 0.27
CCDC88C-202ENST00000334448 CT47A1Q5JQC4 288 aaPredicted RBP16.73■□□□□ 0.27
CCDC88C-202ENST00000334448 NCAPH2Q6IBW4 605 aa16.73■□□□□ 0.27
CCDC88C-202ENST00000334448 LARP4BQ92615 738 aaKnown RBP16.73■□□□□ 0.27
CCDC88C-202ENST00000334448 C7orf25Q9BPX7 421 aa16.73■□□□□ 0.27
CCDC88C-202ENST00000334448 LRRC27Q9C0I9 530 aa16.73■□□□□ 0.27
CCDC88C-202ENST00000334448 UNC45AQ9H3U1 944 aa16.73■□□□□ 0.27
CCDC88C-202ENST00000334448 EFCC1Q9HA90 598 aa16.73■□□□□ 0.27
CCDC88C-202ENST00000334448 ABT1Q9ULW3 272 aaKnown RBP16.73■□□□□ 0.27
CCDC88C-202ENST00000334448 LRRC37A2A6NM11 1700 aa16.73■□□□□ 0.27
CCDC88C-202ENST00000334448 RASSF10A6NK89 507 aa16.72■□□□□ 0.27
CCDC88C-202ENST00000334448 MED24O75448 989 aa16.72■□□□□ 0.27
CCDC88C-202ENST00000334448 SFNP31947 248 aa16.72■□□□□ 0.27
CCDC88C-202ENST00000334448 GRB14Q14449 540 aa16.72■□□□□ 0.27
CCDC88C-202ENST00000334448 KCNB1Q14721 858 aa16.72■□□□□ 0.27
CCDC88C-202ENST00000334448 ECM1Q16610 540 aa16.72■□□□□ 0.27
CCDC88C-202ENST00000334448 UVSSAQ2YD98 709 aa16.72■□□□□ 0.27
CCDC88C-202ENST00000334448 ANO6Q4KMQ2 910 aa16.72■□□□□ 0.27
CCDC88C-202ENST00000334448 ZNF746Q6NUN9 644 aaPredicted RBP16.72■□□□□ 0.27
CCDC88C-202ENST00000334448 CATSPER3Q86XQ3 398 aa16.72■□□□□ 0.27
CCDC88C-202ENST00000334448 REM2Q8IYK8 340 aaPredicted RBP16.72■□□□□ 0.27
CCDC88C-202ENST00000334448 GRAMD1CQ8IYS0 662 aa16.72■□□□□ 0.27
CCDC88C-202ENST00000334448 ERCC4Q92889 916 aaPredicted RBP16.72■□□□□ 0.27
CCDC88C-202ENST00000334448 EIF2AK1Q9BQI3 630 aaKnown RBP16.72■□□□□ 0.27
CCDC88C-202ENST00000334448 GTPBP4Q9BZE4 634 aaKnown RBP16.72■□□□□ 0.27
CCDC88C-202ENST00000334448 TRIM9Q9C026 710 aa16.72■□□□□ 0.27
CCDC88C-202ENST00000334448 MAN1B1Q9UKM7 699 aa16.72■□□□□ 0.27
CCDC88C-202ENST00000334448 DIS3Q9Y2L1 958 aaKnown RBP16.72■□□□□ 0.27
CCDC88C-202ENST00000334448 POTEB3A0JP26 581 aa16.71■□□□□ 0.27
CCDC88C-202ENST00000334448 TLR2O60603 784 aa16.71■□□□□ 0.27
CCDC88C-202ENST00000334448 LYPLA2O95372 231 aa16.71■□□□□ 0.27
CCDC88C-202ENST00000334448 AFMP43652 599 aa16.71■□□□□ 0.27
CCDC88C-202ENST00000334448 JAK3P52333 1124 aa16.71■□□□□ 0.27
CCDC88C-202ENST00000334448 TAF1CQ15572 869 aaPredicted RBP16.71■□□□□ 0.27
CCDC88C-202ENST00000334448 ZRSR1Q15695 479 aaKnown RBP16.71■□□□□ 0.27
CCDC88C-202ENST00000334448 ZNF792Q3KQV3 632 aa16.71■□□□□ 0.27
CCDC88C-202ENST00000334448 POTEBQ6S5H4 581 aa16.71■□□□□ 0.27
CCDC88C-202ENST00000334448 C17orf99Q6UX52 265 aa16.71■□□□□ 0.27
CCDC88C-202ENST00000334448 KCNK18Q7Z418 384 aa16.71■□□□□ 0.27
CCDC88C-202ENST00000334448 CREBZFQ9NS37 354 aa16.71■□□□□ 0.27
CCDC88C-202ENST00000334448 RMND1Q9NWS8 449 aa16.71■□□□□ 0.27
CCDC88C-202ENST00000334448 SLC15A5A6NIM6 579 aa16.7■□□□□ 0.26
CCDC88C-202ENST00000334448 ASB14A6NK59 587 aa16.7■□□□□ 0.26
CCDC88C-202ENST00000334448 ATP9AO75110 1047 aa16.7■□□□□ 0.26
CCDC88C-202ENST00000334448 TGFB3P10600 412 aa16.7■□□□□ 0.26
CCDC88C-202ENST00000334448 BMP6P22004 513 aa16.7■□□□□ 0.26
CCDC88C-202ENST00000334448 PDE4DQ08499 809 aa16.7■□□□□ 0.26
CCDC88C-202ENST00000334448 NOGQ13253 232 aa16.7■□□□□ 0.26
CCDC88C-202ENST00000334448 CUL4BQ13620 913 aa16.7■□□□□ 0.26
CCDC88C-202ENST00000334448 DPCR1Q3MIW9 517 aa16.7■□□□□ 0.26
CCDC88C-202ENST00000334448 KCNV1Q6PIU1 500 aa16.7■□□□□ 0.26
CCDC88C-202ENST00000334448 SV2BQ7L1I2 683 aa16.7■□□□□ 0.26
CCDC88C-202ENST00000334448 SMAP1Q8IYB5 467 aaPredicted RBP16.7■□□□□ 0.26
CCDC88C-202ENST00000334448 MLKLQ8NB16 471 aa16.7■□□□□ 0.26
CCDC88C-202ENST00000334448 ZFP91Q96JP5 570 aaPredicted RBP16.7■□□□□ 0.26
CCDC88C-202ENST00000334448 NAT10Q9H0A0 1025 aaKnown RBP16.7■□□□□ 0.26
CCDC88C-202ENST00000334448 DNAJC25Q9H1X3 360 aa16.7■□□□□ 0.26
CCDC88C-202ENST00000334448 KIAA1024Q9UPX6 916 aa16.7■□□□□ 0.26
CCDC88C-202ENST00000334448 WDR64B1ANS9 1081 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms