RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 CST5P28325 142 aaPredicted RBP18.65■□□□□ 0.58
PDLIM1-201ENST00000329399 ME1P48163 572 aa18.65■□□□□ 0.58
PDLIM1-201ENST00000329399 STXBP2Q15833 593 aa18.65■□□□□ 0.58
PDLIM1-201ENST00000329399 TMEM63CQ9P1W3 806 aa18.65■□□□□ 0.58
PDLIM1-201ENST00000329399 PCDHA4Q9UN74 947 aa18.65■□□□□ 0.58
PDLIM1-201ENST00000329399 FSD2A1L4K1 749 aa18.64■□□□□ 0.57
PDLIM1-201ENST00000329399 PIK3CDO00329 1044 aa18.64■□□□□ 0.57
PDLIM1-201ENST00000329399 EIF3JO75822 258 aaKnown RBP18.64■□□□□ 0.57
PDLIM1-201ENST00000329399 TXNP10599 105 aaKnown RBP18.64■□□□□ 0.57
PDLIM1-201ENST00000329399 RTP1P59025 263 aa18.64■□□□□ 0.57
PDLIM1-201ENST00000329399 SP2Q02086 613 aa18.64■□□□□ 0.57
PDLIM1-201ENST00000329399 FSCN1Q16658 493 aaKnown RBP18.64■□□□□ 0.57
PDLIM1-201ENST00000329399 CXCL17Q6UXB2 119 aa18.64■□□□□ 0.57
PDLIM1-201ENST00000329399 CCDC73Q6ZRK6 1079 aa18.64■□□□□ 0.57
PDLIM1-201ENST00000329399 BLIDQ8IZY5 108 aa18.64■□□□□ 0.57
PDLIM1-201ENST00000329399 SAMD3Q8N6K7 520 aa18.64■□□□□ 0.57
PDLIM1-201ENST00000329399 TSEN34Q9BSV6 310 aaKnown RBP18.64■□□□□ 0.57
PDLIM1-201ENST00000329399 C6orf50Q9HD87 102 aa18.64■□□□□ 0.57
PDLIM1-201ENST00000329399 FRMPD4Q14CM0 1322 aa18.63■□□□□ 0.57
PDLIM1-201ENST00000329399 SNX17Q15036 470 aa18.63■□□□□ 0.57
PDLIM1-201ENST00000329399 TRIM60Q495X7 471 aa18.63■□□□□ 0.57
PDLIM1-201ENST00000329399 SCFD2Q8WU76 684 aa18.63■□□□□ 0.57
PDLIM1-201ENST00000329399 PPP1R13LQ8WUF5 828 aa18.63■□□□□ 0.57
PDLIM1-201ENST00000329399 PGBD1Q96JS3 809 aa18.63■□□□□ 0.57
PDLIM1-201ENST00000329399 ZMYND12Q9H0C1 365 aa18.63■□□□□ 0.57
PDLIM1-201ENST00000329399 CLIC4Q9Y696 253 aa18.63■□□□□ 0.57
PDLIM1-201ENST00000329399 GRIN2DO15399 1336 aa18.62■□□□□ 0.57
PDLIM1-201ENST00000329399 SORBS3O60504 671 aa18.62■□□□□ 0.57
PDLIM1-201ENST00000329399 NAPAP54920 295 aa18.62■□□□□ 0.57
PDLIM1-201ENST00000329399 SEMA3FQ13275 785 aa18.62■□□□□ 0.57
PDLIM1-201ENST00000329399 MCTP2Q6DN12 878 aa18.62■□□□□ 0.57
PDLIM1-201ENST00000329399 LRSAM1Q6UWE0 723 aa18.62■□□□□ 0.57
PDLIM1-201ENST00000329399 TNFRSF25Q93038 417 aa18.62■□□□□ 0.57
PDLIM1-201ENST00000329399 AP5M1Q9H0R1 490 aa18.62■□□□□ 0.57
PDLIM1-201ENST00000329399 TMEM260Q9NX78 707 aa18.62■□□□□ 0.57
PDLIM1-201ENST00000329399 DDX41Q9UJV9 622 aaKnown RBP18.62■□□□□ 0.57
PDLIM1-201ENST00000329399 ATP11BQ9Y2G3 1177 aa18.62■□□□□ 0.57
PDLIM1-201ENST00000329399 Q9Y3F1 56 aa18.62■□□□□ 0.57
PDLIM1-201ENST00000329399 CUTAO60888 179 aa18.61■□□□□ 0.57
PDLIM1-201ENST00000329399 CMA1P23946 247 aa18.61■□□□□ 0.57
PDLIM1-201ENST00000329399 MRE11P49959 708 aa18.61■□□□□ 0.57
PDLIM1-201ENST00000329399 CEBPZQ03701 1054 aaKnown RBP18.61■□□□□ 0.57
PDLIM1-201ENST00000329399 TLE2Q04725 743 aa18.61■□□□□ 0.57
PDLIM1-201ENST00000329399 ARHGAP1Q07960 439 aa18.61■□□□□ 0.57
PDLIM1-201ENST00000329399 ORC2Q13416 577 aaPredicted RBP18.61■□□□□ 0.57
PDLIM1-201ENST00000329399 PTPAQ15257 358 aa18.61■□□□□ 0.57
PDLIM1-201ENST00000329399 SH3RF1Q7Z6J0 888 aa18.61■□□□□ 0.57
PDLIM1-201ENST00000329399 ZNF579Q8NAF0 562 aaKnown RBP18.61■□□□□ 0.57
PDLIM1-201ENST00000329399 OR6J1Q8NGC5 347 aa18.61■□□□□ 0.57
PDLIM1-201ENST00000329399 SPC25Q9HBM1 224 aa18.61■□□□□ 0.57
PDLIM1-201ENST00000329399 PCDHA7Q9UN72 937 aa18.61■□□□□ 0.57
PDLIM1-201ENST00000329399 TELO2Q9Y4R8 837 aa18.61■□□□□ 0.57
PDLIM1-201ENST00000329399 SMCO2A6NFE2 343 aa18.6■□□□□ 0.57
PDLIM1-201ENST00000329399 MOXD2PA6NHM9 499 aa18.6■□□□□ 0.57
PDLIM1-201ENST00000329399 B4DLN1 442 aa18.6■□□□□ 0.57
PDLIM1-201ENST00000329399 MRPL12P52815 198 aaKnown RBP18.6■□□□□ 0.57
PDLIM1-201ENST00000329399 PSMC6P62333 389 aa18.6■□□□□ 0.57
PDLIM1-201ENST00000329399 FAM160A1Q05DH4 1040 aa18.6■□□□□ 0.57
PDLIM1-201ENST00000329399 TTLL4Q14679 1199 aa18.6■□□□□ 0.57
PDLIM1-201ENST00000329399 NPY5RQ15761 445 aa18.6■□□□□ 0.57
PDLIM1-201ENST00000329399 MRPS27Q92552 414 aaKnown RBP18.6■□□□□ 0.57
PDLIM1-201ENST00000329399 MPHOSPH6Q99547 160 aaKnown RBP18.6■□□□□ 0.57
PDLIM1-201ENST00000329399 RIC8AQ9NPQ8 531 aa18.6■□□□□ 0.57
PDLIM1-201ENST00000329399 PCDHA6Q9UN73 950 aa18.6■□□□□ 0.57
PDLIM1-201ENST00000329399 PCDHA8Q9Y5H6 950 aa18.6■□□□□ 0.57
PDLIM1-201ENST00000329399 NR2E3Q9Y5X4 410 aa18.6■□□□□ 0.57
PDLIM1-201ENST00000329399 KIAA1217Q5T5P2 1943 aa18.6■□□□□ 0.57
PDLIM1-201ENST00000329399 CCND2P30279 289 aa18.59■□□□□ 0.57
PDLIM1-201ENST00000329399 CDK7P50613 346 aa18.59■□□□□ 0.57
PDLIM1-201ENST00000329399 NR5A1Q13285 461 aa18.59■□□□□ 0.57
PDLIM1-201ENST00000329399 KRT25Q7Z3Z0 450 aa18.59■□□□□ 0.57
PDLIM1-201ENST00000329399 KRI1Q8N9T8 703 aaKnown RBP18.59■□□□□ 0.57
PDLIM1-201ENST00000329399 PCSK9Q8NBP7 692 aaKnown RBP18.59■□□□□ 0.57
PDLIM1-201ENST00000329399 AFG1LQ8WV93 481 aa18.59■□□□□ 0.57
PDLIM1-201ENST00000329399 CUL5Q93034 780 aa18.59■□□□□ 0.57
PDLIM1-201ENST00000329399 NUP62CLQ9H1M0 184 aa18.59■□□□□ 0.57
PDLIM1-201ENST00000329399 STARD7Q9NQZ5 370 aa18.59■□□□□ 0.57
PDLIM1-201ENST00000329399 COLQQ9Y215 455 aaPredicted RBP18.59■□□□□ 0.57
PDLIM1-201ENST00000329399 FAM237AA0A1B0GTK4 181 aa18.58■□□□□ 0.57
PDLIM1-201ENST00000329399 TRIM43BA6NCK2 446 aa18.58■□□□□ 0.57
PDLIM1-201ENST00000329399 A6NJR5 290 aa18.58■□□□□ 0.57
PDLIM1-201ENST00000329399 RBAK-RBAKDNI3L0D1 243 aa18.58■□□□□ 0.57
PDLIM1-201ENST00000329399 ITGB8P26012 769 aa18.58■□□□□ 0.57
PDLIM1-201ENST00000329399 DEKP35659 375 aaKnown RBP18.58■□□□□ 0.57
PDLIM1-201ENST00000329399 C1orf53Q5VUE5 145 aa18.58■□□□□ 0.57
PDLIM1-201ENST00000329399 VTI1AQ96AJ9 217 aa18.58■□□□□ 0.57
PDLIM1-201ENST00000329399 TRIM43Q96BQ3 446 aaPredicted RBP18.58■□□□□ 0.57
PDLIM1-201ENST00000329399 CCDC194A0A1B0GVG4 234 aa18.58■□□□□ 0.56
PDLIM1-201ENST00000329399 M0R2N6 131 aa18.58■□□□□ 0.56
PDLIM1-201ENST00000329399 PQBP1O60828 265 aaKnown RBP18.58■□□□□ 0.56
PDLIM1-201ENST00000329399 ITGB5P18084 799 aa18.58■□□□□ 0.56
PDLIM1-201ENST00000329399 CLK2P49760 499 aaKnown RBP18.58■□□□□ 0.56
PDLIM1-201ENST00000329399 TOB1P50616 345 aaPredicted RBP18.58■□□□□ 0.56
PDLIM1-201ENST00000329399 PURAQ00577 322 aaKnown RBP18.58■□□□□ 0.56
PDLIM1-201ENST00000329399 PCNX4Q63HM2 1172 aa18.58■□□□□ 0.56
PDLIM1-201ENST00000329399 CYP2W1Q8TAV3 490 aa18.58■□□□□ 0.56
PDLIM1-201ENST00000329399 OXER1Q8TDS5 423 aa18.58■□□□□ 0.56
PDLIM1-201ENST00000329399 TIGD1Q96MW7 591 aa18.58■□□□□ 0.56
PDLIM1-201ENST00000329399 INPP4AQ96PE3 977 aaPredicted RBP18.58■□□□□ 0.56
PDLIM1-201ENST00000329399 CLSTN2Q9H4D0 955 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms