RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 MTCH2Q9Y6C9 303 aa14.72□□□□□ -0.05
CD44-203ENST00000278386 EMSYQ7Z589 1322 aa14.71□□□□□ -0.05
CD44-203ENST00000278386 ABHD14A-ACY1A0A1B0GW23 586 aa14.71□□□□□ -0.05
CD44-203ENST00000278386 H3BRB1 525 aa14.71□□□□□ -0.05
CD44-203ENST00000278386 SH2B2O14492 632 aaPredicted RBP14.71□□□□□ -0.05
CD44-203ENST00000278386 FIBPO43427 364 aa14.71□□□□□ -0.05
CD44-203ENST00000278386 PLEKHA8P1O95397 391 aa14.71□□□□□ -0.05
CD44-203ENST00000278386 SMIM10L2AP0DMW4 78 aa14.71□□□□□ -0.05
CD44-203ENST00000278386 SMIM10L2BP0DMW5 78 aa14.71□□□□□ -0.05
CD44-203ENST00000278386 RXRAP19793 462 aa14.71□□□□□ -0.05
CD44-203ENST00000278386 MCM5P33992 734 aa14.71□□□□□ -0.05
CD44-203ENST00000278386 MRPS9P82933 396 aaKnown RBP14.71□□□□□ -0.05
CD44-203ENST00000278386 HIC1Q14526 733 aa14.71□□□□□ -0.05
CD44-203ENST00000278386 TCTN1Q2MV58 587 aa14.71□□□□□ -0.05
CD44-203ENST00000278386 USP17L6PQ6QN14 398 aa14.71□□□□□ -0.05
CD44-203ENST00000278386 RAB11FIP4Q86YS3 637 aa14.71□□□□□ -0.05
CD44-203ENST00000278386 GDPD5Q8WTR4 605 aa14.71□□□□□ -0.05
CD44-203ENST00000278386 INPP4AQ96PE3 977 aaPredicted RBP14.71□□□□□ -0.05
CD44-203ENST00000278386 MAP3K14Q99558 947 aa14.71□□□□□ -0.05
CD44-203ENST00000278386 TUT1Q9H6E5 874 aaKnown RBP14.71□□□□□ -0.05
CD44-203ENST00000278386 ZNF215Q9UL58 517 aaPredicted RBP14.71□□□□□ -0.05
CD44-203ENST00000278386 MTUS1Q9ULD2 1270 aa14.71□□□□□ -0.05
CD44-203ENST00000278386 RSPH10B2B2RC85 870 aa14.7□□□□□ -0.06
CD44-203ENST00000278386 RBAK-RBAKDNI3L0D1 243 aa14.7□□□□□ -0.06
CD44-203ENST00000278386 LGR5O75473 907 aa14.7□□□□□ -0.06
CD44-203ENST00000278386 GJB5O95377 273 aa14.7□□□□□ -0.06
CD44-203ENST00000278386 CTSHP09668 335 aa14.7□□□□□ -0.06
CD44-203ENST00000278386 RSPH10BP0C881 870 aa14.7□□□□□ -0.06
CD44-203ENST00000278386 ICAM3P32942 547 aa14.7□□□□□ -0.06
CD44-203ENST00000278386 GNAQP50148 359 aa14.7□□□□□ -0.06
CD44-203ENST00000278386 TFF2Q03403 129 aa14.7□□□□□ -0.06
CD44-203ENST00000278386 SEMA3FQ13275 785 aa14.7□□□□□ -0.06
CD44-203ENST00000278386 GRB10Q13322 594 aa14.7□□□□□ -0.06
CD44-203ENST00000278386 MBTPS1Q14703 1052 aa14.7□□□□□ -0.06
CD44-203ENST00000278386 AAK1Q2M2I8 961 aa14.7□□□□□ -0.06
CD44-203ENST00000278386 UTP14CQ5TAP6 766 aaKnown RBP14.7□□□□□ -0.06
CD44-203ENST00000278386 TRAF7Q6Q0C0 670 aa14.7□□□□□ -0.06
CD44-203ENST00000278386 METTL7BQ6UX53 244 aa14.7□□□□□ -0.06
CD44-203ENST00000278386 SERINC5Q86VE9 423 aa14.7□□□□□ -0.06
CD44-203ENST00000278386 TRIM50Q86XT4 487 aa14.7□□□□□ -0.06
CD44-203ENST00000278386 TMEM87BQ96K49 555 aa14.7□□□□□ -0.06
CD44-203ENST00000278386 LZTS2Q9BRK4 669 aa14.7□□□□□ -0.06
CD44-203ENST00000278386 BCAS3Q9H6U6 928 aa14.7□□□□□ -0.06
CD44-203ENST00000278386 ANO2Q9NQ90 1003 aa14.7□□□□□ -0.06
CD44-203ENST00000278386 XIRP2A4UGR9 3374 aa14.7□□□□□ -0.06
CD44-203ENST00000278386 RALGAPA2Q2PPJ7 1873 aa14.69□□□□□ -0.06
CD44-203ENST00000278386 SPATA31C2B4DYI2 1134 aa14.69□□□□□ -0.06
CD44-203ENST00000278386 SLC27A2O14975 620 aa14.69□□□□□ -0.06
CD44-203ENST00000278386 TREHO43280 583 aa14.69□□□□□ -0.06
CD44-203ENST00000278386 PCNX4Q63HM2 1172 aa14.69□□□□□ -0.06
CD44-203ENST00000278386 NLRX1Q86UT6 975 aa14.69□□□□□ -0.06
CD44-203ENST00000278386 MYOCDQ8IZQ8 938 aa14.69□□□□□ -0.06
CD44-203ENST00000278386 CMTR1Q8N1G2 835 aaKnown RBP14.69□□□□□ -0.06
CD44-203ENST00000278386 RAD9AQ99638 391 aa14.69□□□□□ -0.06
CD44-203ENST00000278386 GPR20Q99678 358 aa14.69□□□□□ -0.06
CD44-203ENST00000278386 ESYT1Q9BSJ8 1104 aa14.69□□□□□ -0.06
CD44-203ENST00000278386 MTA3Q9BTC8 594 aa14.69□□□□□ -0.06
CD44-203ENST00000278386 USP26Q9BXU7 913 aa14.69□□□□□ -0.06
CD44-203ENST00000278386 LSG1Q9H089 658 aaKnown RBP14.69□□□□□ -0.06
CD44-203ENST00000278386 AMHP03971 560 aa14.68□□□□□ -0.06
CD44-203ENST00000278386 CALM1P0DP23 149 aa14.68□□□□□ -0.06
CD44-203ENST00000278386 CALM2P0DP24 149 aa14.68□□□□□ -0.06
CD44-203ENST00000278386 CALM3P0DP25 149 aa14.68□□□□□ -0.06
CD44-203ENST00000278386 GNAT1P11488 350 aa14.68□□□□□ -0.06
CD44-203ENST00000278386 POU3F3P20264 500 aaPredicted RBP14.68□□□□□ -0.06
CD44-203ENST00000278386 CREB3L3Q68CJ9 461 aa14.68□□□□□ -0.06
CD44-203ENST00000278386 XRRA1Q6P2D8 792 aa14.68□□□□□ -0.06
CD44-203ENST00000278386 MICU3Q86XE3 530 aa14.68□□□□□ -0.06
CD44-203ENST00000278386 TMTC2Q8N394 836 aa14.68□□□□□ -0.06
CD44-203ENST00000278386 SRBD1Q8N5C6 995 aaKnown RBP14.68□□□□□ -0.06
CD44-203ENST00000278386 DBF4BQ8NFT6 615 aa14.68□□□□□ -0.06
CD44-203ENST00000278386 TGS1Q96RS0 853 aaKnown RBP14.68□□□□□ -0.06
CD44-203ENST00000278386 LRRC2Q9BYS8 371 aa14.68□□□□□ -0.06
CD44-203ENST00000278386 RNPEPQ9H4A4 650 aa14.68□□□□□ -0.06
CD44-203ENST00000278386 SLC12A7Q9Y666 1083 aa14.68□□□□□ -0.06
CD44-203ENST00000278386 LOXHD1Q8IVV2 1947 aa14.68□□□□□ -0.06
CD44-203ENST00000278386 hCG_1642624A0A1W2PR95 340 aa14.67□□□□□ -0.06
CD44-203ENST00000278386 LINC01553A4QN01 128 aa14.67□□□□□ -0.06
CD44-203ENST00000278386 PIK3CDO00329 1044 aa14.67□□□□□ -0.06
CD44-203ENST00000278386 MEIS2O14770 477 aa14.67□□□□□ -0.06
CD44-203ENST00000278386 SMARCA1P28370 1054 aa14.67□□□□□ -0.06
CD44-203ENST00000278386 HOXC8P31273 242 aa14.67□□□□□ -0.06
CD44-203ENST00000278386 KCNQ1P51787 676 aa14.67□□□□□ -0.06
CD44-203ENST00000278386 ARHGAP4P98171 946 aa14.67□□□□□ -0.06
CD44-203ENST00000278386 UBE2SQ16763 222 aa14.67□□□□□ -0.06
CD44-203ENST00000278386 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.67□□□□□ -0.06
CD44-203ENST00000278386 CCDC82Q8N4S0 544 aa14.67□□□□□ -0.06
CD44-203ENST00000278386 SEPT8Q92599 483 aa14.67□□□□□ -0.06
CD44-203ENST00000278386 PSTPIP2Q9H939 334 aa14.67□□□□□ -0.06
CD44-203ENST00000278386 SETD4Q9NVD3 440 aa14.67□□□□□ -0.06
CD44-203ENST00000278386 PKD2L1Q9P0L9 805 aa14.67□□□□□ -0.06
CD44-203ENST00000278386 SPDYE3A6NKU9 549 aa14.66□□□□□ -0.06
CD44-203ENST00000278386 CAND2O75155 1236 aa14.66□□□□□ -0.06
CD44-203ENST00000278386 LIFRP42702 1097 aa14.66□□□□□ -0.06
CD44-203ENST00000278386 COL9A3Q14050 684 aaPredicted RBP14.66□□□□□ -0.06
CD44-203ENST00000278386 PLEKHG4Q58EX7 1191 aa14.66□□□□□ -0.06
CD44-203ENST00000278386 HEATR3Q7Z4Q2 680 aa14.66□□□□□ -0.06
CD44-203ENST00000278386 GIMAP8Q8ND71 665 aaPredicted RBP14.66□□□□□ -0.06
CD44-203ENST00000278386 LMBR1Q8WVP7 490 aa14.66□□□□□ -0.06
CD44-203ENST00000278386 GPRASP2Q96D09 838 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms