RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 PPFIBP1Q86W92 1011 aa17.04■□□□□ 0.32
SF3B4-201ENST00000271628 IRF2BP1Q8IU81 584 aa17.04■□□□□ 0.32
SF3B4-201ENST00000271628 SLC5A5Q92911 643 aa17.04■□□□□ 0.32
SF3B4-201ENST00000271628 WDR11Q9BZH6 1224 aa17.04■□□□□ 0.32
SF3B4-201ENST00000271628 RAVER2Q9HCJ3 691 aaKnown RBP17.04■□□□□ 0.32
SF3B4-201ENST00000271628 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.04■□□□□ 0.32
SF3B4-201ENST00000271628 PSMD10O75832 226 aa17.03■□□□□ 0.32
SF3B4-201ENST00000271628 FGFR1OPO95684 399 aaKnown RBP17.03■□□□□ 0.32
SF3B4-201ENST00000271628 SPATA31C1P0DKV0 1188 aa17.03■□□□□ 0.32
SF3B4-201ENST00000271628 MUTP22033 750 aa17.03■□□□□ 0.32
SF3B4-201ENST00000271628 PPP2R5CQ13362 524 aa17.03■□□□□ 0.32
SF3B4-201ENST00000271628 E4F1Q66K89 784 aaPredicted RBP17.03■□□□□ 0.32
SF3B4-201ENST00000271628 ANKRD40Q6AI12 368 aa17.03■□□□□ 0.32
SF3B4-201ENST00000271628 CREBRFQ8IUR6 639 aa17.03■□□□□ 0.32
SF3B4-201ENST00000271628 SYT2Q8N9I0 419 aaPredicted RBP17.03■□□□□ 0.32
SF3B4-201ENST00000271628 PANK4Q9NVE7 773 aa17.03■□□□□ 0.32
SF3B4-201ENST00000271628 VWA5AO00534 786 aa17.03■□□□□ 0.32
SF3B4-201ENST00000271628 DDNO94850 711 aaPredicted RBP17.03■□□□□ 0.32
SF3B4-201ENST00000271628 KIF20AO95235 890 aa17.03■□□□□ 0.32
SF3B4-201ENST00000271628 TPM1P09493 284 aa17.03■□□□□ 0.32
SF3B4-201ENST00000271628 BCRP11274 1271 aa17.03■□□□□ 0.32
SF3B4-201ENST00000271628 SLC12A3P55017 1021 aa17.03■□□□□ 0.32
SF3B4-201ENST00000271628 LRRC63Q05C16 580 aa17.03■□□□□ 0.32
SF3B4-201ENST00000271628 DGKZQ13574 1117 aa17.03■□□□□ 0.32
SF3B4-201ENST00000271628 NIPA1Q7RTP0 329 aa17.03■□□□□ 0.32
SF3B4-201ENST00000271628 GPBP1Q86WP2 473 aa17.03■□□□□ 0.32
SF3B4-201ENST00000271628 DUSP9Q99956 384 aaKnown RBP17.03■□□□□ 0.32
SF3B4-201ENST00000271628 EIF2AK1Q9BQI3 630 aaKnown RBP17.03■□□□□ 0.32
SF3B4-201ENST00000271628 MXRA8Q9BRK3 442 aa17.03■□□□□ 0.32
SF3B4-201ENST00000271628 ZNF577Q9BSK1 485 aa17.03■□□□□ 0.32
SF3B4-201ENST00000271628 VPS16Q9H269 839 aa17.03■□□□□ 0.32
SF3B4-201ENST00000271628 TUFT1Q9NNX1 390 aa17.03■□□□□ 0.32
SF3B4-201ENST00000271628 RPTORQ8N122 1335 aa17.02■□□□□ 0.32
SF3B4-201ENST00000271628 POTEFA5A3E0 1075 aa17.02■□□□□ 0.32
SF3B4-201ENST00000271628 AKR1B15C9JRZ8 316 aaPredicted RBP17.02■□□□□ 0.32
SF3B4-201ENST00000271628 NFIBO00712 420 aa17.02■□□□□ 0.32
SF3B4-201ENST00000271628 STX10O60499 249 aa17.02■□□□□ 0.32
SF3B4-201ENST00000271628 POTEIP0CG38 1075 aa17.02■□□□□ 0.32
SF3B4-201ENST00000271628 CYP11B2P19099 503 aa17.02■□□□□ 0.32
SF3B4-201ENST00000271628 OAZ1P54368 228 aa17.02■□□□□ 0.32
SF3B4-201ENST00000271628 COASYQ13057 564 aa17.02■□□□□ 0.32
SF3B4-201ENST00000271628 POTEGQ6S5H5 508 aa17.02■□□□□ 0.32
SF3B4-201ENST00000271628 POTEEQ6S8J3 1075 aa17.02■□□□□ 0.32
SF3B4-201ENST00000271628 TC2NQ8N9U0 490 aa17.02■□□□□ 0.32
SF3B4-201ENST00000271628 ERO1AQ96HE7 468 aa17.02■□□□□ 0.32
SF3B4-201ENST00000271628 RNF181Q9P0P0 153 aa17.02■□□□□ 0.32
SF3B4-201ENST00000271628 ARHGAP6O43182 974 aa17.01■□□□□ 0.31
SF3B4-201ENST00000271628 GAS7O60861 476 aa17.01■□□□□ 0.31
SF3B4-201ENST00000271628 KRT18P05783 430 aaKnown RBP17.01■□□□□ 0.31
SF3B4-201ENST00000271628 UBXN2AP68543 259 aa17.01■□□□□ 0.31
SF3B4-201ENST00000271628 TRIM14Q14142 442 aa17.01■□□□□ 0.31
SF3B4-201ENST00000271628 PTPN21Q16825 1174 aa17.01■□□□□ 0.31
SF3B4-201ENST00000271628 HPS3Q969F9 1004 aa17.01■□□□□ 0.31
SF3B4-201ENST00000271628 DCPSQ96C86 337 aaKnown RBP17.01■□□□□ 0.31
SF3B4-201ENST00000271628 RIT2Q99578 217 aa17.01■□□□□ 0.31
SF3B4-201ENST00000271628 BAG1Q99933 345 aaPredicted RBP17.01■□□□□ 0.31
SF3B4-201ENST00000271628 HSD17B14Q9BPX1 270 aa17.01■□□□□ 0.31
SF3B4-201ENST00000271628 TAB2Q9NYJ8 693 aa17.01■□□□□ 0.31
SF3B4-201ENST00000271628 TMOD4Q9NZQ9 345 aa17.01■□□□□ 0.31
SF3B4-201ENST00000271628 HMGCS2P54868 508 aa17.01■□□□□ 0.31
SF3B4-201ENST00000271628 CBX1P83916 185 aa17.01■□□□□ 0.31
SF3B4-201ENST00000271628 COG2Q14746 738 aa17.01■□□□□ 0.31
SF3B4-201ENST00000271628 FAM26FQ5R3K3 315 aa17.01■□□□□ 0.31
SF3B4-201ENST00000271628 PCNX4Q63HM2 1172 aa17.01■□□□□ 0.31
SF3B4-201ENST00000271628 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.01■□□□□ 0.31
SF3B4-201ENST00000271628 RBM46Q8TBY0 533 aaKnown RBP17.01■□□□□ 0.31
SF3B4-201ENST00000271628 PPP1R13BQ96KQ4 1090 aa17.01■□□□□ 0.31
SF3B4-201ENST00000271628 TRERF1Q96PN7 1200 aa17.01■□□□□ 0.31
SF3B4-201ENST00000271628 PANX2Q96RD6 677 aa17.01■□□□□ 0.31
SF3B4-201ENST00000271628 SYT17Q9BSW7 474 aa17.01■□□□□ 0.31
SF3B4-201ENST00000271628 SEMA6BQ9H3T3 888 aa17.01■□□□□ 0.31
SF3B4-201ENST00000271628 FRMD3A2A2Y4 597 aa17■□□□□ 0.31
SF3B4-201ENST00000271628 IPO5O00410 1097 aaKnown RBP17■□□□□ 0.31
SF3B4-201ENST00000271628 ADKP55263 362 aaKnown RBP17■□□□□ 0.31
SF3B4-201ENST00000271628 CNGA4Q8IV77 575 aa17■□□□□ 0.31
SF3B4-201ENST00000271628 MYOCDQ8IZQ8 938 aa17■□□□□ 0.31
SF3B4-201ENST00000271628 TSG101Q99816 390 aa17■□□□□ 0.31
SF3B4-201ENST00000271628 TEKT3Q9BXF9 490 aa17■□□□□ 0.31
SF3B4-201ENST00000271628 NAA15Q9BXJ9 866 aaKnown RBP17■□□□□ 0.31
SF3B4-201ENST00000271628 OGFRQ9NZT2 677 aa17■□□□□ 0.31
SF3B4-201ENST00000271628 ADAMTS5Q9UNA0 930 aa17■□□□□ 0.31
SF3B4-201ENST00000271628 AFG3L2Q9Y4W6 797 aa17■□□□□ 0.31
SF3B4-201ENST00000271628 PARP14Q460N5 1801 aa17■□□□□ 0.31
SF3B4-201ENST00000271628 PHIPQ8WWQ0 1821 aa17■□□□□ 0.31
SF3B4-201ENST00000271628 EML1O00423 815 aa17■□□□□ 0.31
SF3B4-201ENST00000271628 USP2O75604 605 aaPredicted RBP17■□□□□ 0.31
SF3B4-201ENST00000271628 SLU7O95391 586 aaKnown RBP17■□□□□ 0.31
SF3B4-201ENST00000271628 EYA4O95677 639 aa17■□□□□ 0.31
SF3B4-201ENST00000271628 DSG3P32926 999 aa17■□□□□ 0.31
SF3B4-201ENST00000271628 DNM2P50570 870 aa17■□□□□ 0.31
SF3B4-201ENST00000271628 UBXN1Q04323 297 aa17■□□□□ 0.31
SF3B4-201ENST00000271628 ARSHQ5FYA8 562 aa17■□□□□ 0.31
SF3B4-201ENST00000271628 HERC4Q5GLZ8 1057 aaPredicted RBP17■□□□□ 0.31
SF3B4-201ENST00000271628 MUM1L1Q5H9M0 696 aa17■□□□□ 0.31
SF3B4-201ENST00000271628 SULF1Q8IWU6 871 aa17■□□□□ 0.31
SF3B4-201ENST00000271628 SYTL5Q8TDW5 730 aaPredicted RBP17■□□□□ 0.31
SF3B4-201ENST00000271628 ATG4CQ96DT6 458 aa17■□□□□ 0.31
SF3B4-201ENST00000271628 CCDC51Q96ER9 411 aa17■□□□□ 0.31
SF3B4-201ENST00000271628 TUBGCP2Q9BSJ2 902 aa17■□□□□ 0.31
SF3B4-201ENST00000271628 MAF1Q9H063 256 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms