RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 KLC2Q9H0B6 622 aa12.27□□□□□ -0.44
PTPN4-201ENST00000263708 TRIP13Q15645 432 aaPredicted RBP12.27□□□□□ -0.44
PTPN4-201ENST00000263708 ARPP21Q9UBL0 812 aaPredicted RBP12.27□□□□□ -0.44
PTPN4-201ENST00000263708 CCT5P48643 541 aa12.27□□□□□ -0.45
PTPN4-201ENST00000263708 IFT43Q96FT9 208 aa12.27□□□□□ -0.45
PTPN4-201ENST00000263708 MYL1P05976 194 aa12.27□□□□□ -0.45
PTPN4-201ENST00000263708 DOK7Q18PE1 504 aa12.27□□□□□ -0.45
PTPN4-201ENST00000263708 DCAF4L1Q3SXM0 396 aa12.27□□□□□ -0.45
PTPN4-201ENST00000263708 NT5C1BQ96P26 610 aa12.27□□□□□ -0.45
PTPN4-201ENST00000263708 SMYD3Q9H7B4 428 aa12.27□□□□□ -0.45
PTPN4-201ENST00000263708 AFF4Q9UHB7 1163 aaKnown RBP12.27□□□□□ -0.45
PTPN4-201ENST00000263708 DDAH1O94760 285 aa12.27□□□□□ -0.45
PTPN4-201ENST00000263708 BRD2P25440 801 aaKnown RBP12.27□□□□□ -0.45
PTPN4-201ENST00000263708 CCNA1P78396 465 aa12.27□□□□□ -0.45
PTPN4-201ENST00000263708 PPARAQ07869 468 aa12.27□□□□□ -0.45
PTPN4-201ENST00000263708 XPO4Q9C0E2 1151 aaKnown RBP12.27□□□□□ -0.45
PTPN4-201ENST00000263708 ATP8A1Q9Y2Q0 1164 aa12.27□□□□□ -0.45
PTPN4-201ENST00000263708 DPYSL4O14531 572 aa12.27□□□□□ -0.45
PTPN4-201ENST00000263708 NBPF20Q3BBV1 942 aa12.27□□□□□ -0.45
PTPN4-201ENST00000263708 NBPF10Q6P3W6 841 aaKnown RBP12.27□□□□□ -0.45
PTPN4-201ENST00000263708 EDEM3Q9BZQ6 932 aa12.27□□□□□ -0.45
PTPN4-201ENST00000263708 KMT5AQ9NQR1 393 aa12.27□□□□□ -0.45
PTPN4-201ENST00000263708 SENP1Q9P0U3 644 aa12.27□□□□□ -0.45
PTPN4-201ENST00000263708 PCDHB15Q9Y5E8 787 aa12.27□□□□□ -0.45
PTPN4-201ENST00000263708 NEK2P51955 445 aa12.27□□□□□ -0.45
PTPN4-201ENST00000263708 UBXN2AP68543 259 aa12.27□□□□□ -0.45
PTPN4-201ENST00000263708 COPG1Q9Y678 874 aaKnown RBP12.27□□□□□ -0.45
PTPN4-201ENST00000263708 SLC9A1P19634 815 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 BLIDQ8IZY5 108 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 LPIN2Q92539 896 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 EYA2O00167 538 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 MTHFSDQ2M296 383 aaKnown RBP12.26□□□□□ -0.45
PTPN4-201ENST00000263708 PI4K2BG5E9Z4 385 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 CCND2P30279 289 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 DNAJC24Q6P3W2 148 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 EXOC8Q8IYI6 725 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 SPICE1Q8N0Z3 855 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 ZSCAN10Q96SZ4 725 aaPredicted RBP12.26□□□□□ -0.45
PTPN4-201ENST00000263708 DNAJC7Q99615 494 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 E5RI56 91 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 PRR23D1E9PI22 279 aaPredicted RBP12.26□□□□□ -0.45
PTPN4-201ENST00000263708 COBLO75128 1261 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 PRR23D2P0DMB1 279 aaPredicted RBP12.26□□□□□ -0.45
PTPN4-201ENST00000263708 HSPA1AP0DMV8 641 aaKnown RBP12.26□□□□□ -0.45
PTPN4-201ENST00000263708 HSPA1BP0DMV9 641 aaKnown RBP12.26□□□□□ -0.45
PTPN4-201ENST00000263708 MARK3P27448 753 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 DDX42Q86XP3 938 aaKnown RBP eCLIP12.26□□□□□ -0.45
PTPN4-201ENST00000263708 CFAP69A5D8W1 941 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 RPN1P04843 607 aaKnown RBP12.26□□□□□ -0.45
PTPN4-201ENST00000263708 SLCO1A2P46721 670 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 GABPB1Q06547 395 aaPredicted RBP12.26□□□□□ -0.45
PTPN4-201ENST00000263708 OR9Q1Q8NGQ5 310 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 PLBD2Q8NHP8 589 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 TRIM11Q96F44 468 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 MYCBPQ99417 103 aaPredicted RBP12.26□□□□□ -0.45
PTPN4-201ENST00000263708 ZNF577Q9BSK1 485 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 GEMIN8Q9NWZ8 242 aaKnown RBP12.26□□□□□ -0.45
PTPN4-201ENST00000263708 ZNF215Q9UL58 517 aaPredicted RBP12.26□□□□□ -0.45
PTPN4-201ENST00000263708 RNMTO43148 476 aaKnown RBP12.26□□□□□ -0.45
PTPN4-201ENST00000263708 C10orf76Q5T2E6 689 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 KIAA0825Q8IV33 1275 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 PLEKHM2Q8IWE5 1019 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 ZC3H15Q8WU90 426 aaKnown RBP12.26□□□□□ -0.45
PTPN4-201ENST00000263708 FBXL5Q9UKA1 691 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 SUPT3HB4E1H0 165 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 GOLGA8HP0CJ92 632 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 CD58P19256 250 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 GOLGA8FQ08AF8 430 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 GOLGA8DPQ0D2H9 430 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 ACCSLQ4AC99 568 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 TAF1BQ53T94 588 aaPredicted RBP12.26□□□□□ -0.45
PTPN4-201ENST00000263708 PBXIP1Q96AQ6 731 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 ABCC1P33527 1531 aa12.26□□□□□ -0.45
PTPN4-201ENST00000263708 EIF4A2Q14240 407 aaKnown RBP12.25□□□□□ -0.45
PTPN4-201ENST00000263708 ARMC9Q7Z3E5 817 aa12.25□□□□□ -0.45
PTPN4-201ENST00000263708 CCDC51Q96ER9 411 aa12.25□□□□□ -0.45
PTPN4-201ENST00000263708 ZWILCHQ9H900 591 aa12.25□□□□□ -0.45
PTPN4-201ENST00000263708 PIDD1Q9HB75 910 aa12.25□□□□□ -0.45
PTPN4-201ENST00000263708 CUL7Q14999 1698 aa12.25□□□□□ -0.45
PTPN4-201ENST00000263708 ARHGEF37A1IGU5 675 aa12.25□□□□□ -0.45
PTPN4-201ENST00000263708 HSPA4LO95757 839 aa12.25□□□□□ -0.45
PTPN4-201ENST00000263708 ICA1Q05084 483 aa12.25□□□□□ -0.45
PTPN4-201ENST00000263708 PSMD2Q13200 908 aa12.25□□□□□ -0.45
PTPN4-201ENST00000263708 KIAA1755Q5JYT7 1200 aa12.25□□□□□ -0.45
PTPN4-201ENST00000263708 FAM173BQ6P4H8 233 aa12.25□□□□□ -0.45
PTPN4-201ENST00000263708 PCDHA1Q9Y5I3 950 aa12.25□□□□□ -0.45
PTPN4-201ENST00000263708 RASGRF2O14827 1237 aa12.25□□□□□ -0.45
PTPN4-201ENST00000263708 DDIT3P35638 169 aa12.25□□□□□ -0.45
PTPN4-201ENST00000263708 OTUB1Q96FW1 271 aaPredicted RBP12.25□□□□□ -0.45
PTPN4-201ENST00000263708 OR52Z1P0C646 297 aa12.25□□□□□ -0.45
PTPN4-201ENST00000263708 TCF3P15923 654 aa12.25□□□□□ -0.45
PTPN4-201ENST00000263708 CAPZA2P47755 286 aa12.25□□□□□ -0.45
PTPN4-201ENST00000263708 ANGPT1Q15389 498 aa12.25□□□□□ -0.45
PTPN4-201ENST00000263708 SLC7A3Q8WY07 619 aa12.25□□□□□ -0.45
PTPN4-201ENST00000263708 EEF2KMTQ96G04 330 aa12.25□□□□□ -0.45
PTPN4-201ENST00000263708 NACC1Q96RE7 527 aa12.25□□□□□ -0.45
PTPN4-201ENST00000263708 YY1AP1Q9H869 796 aa12.25□□□□□ -0.45
PTPN4-201ENST00000263708 GTSE1Q9NYZ3 720 aa12.25□□□□□ -0.45
PTPN4-201ENST00000263708 KIAA1024Q9UPX6 916 aa12.25□□□□□ -0.45
PTPN4-201ENST00000263708 EXOC1LA0A1B0GW35 172 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms