RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 ADAM9Q13443 819 aa13.93□□□□□ -0.18
LIG1-201ENST00000263274 TRMT1LQ7Z2T5 733 aaKnown RBP13.93□□□□□ -0.18
LIG1-201ENST00000263274 GUF1Q8N442 669 aaKnown RBP13.93□□□□□ -0.18
LIG1-201ENST00000263274 CD209Q9NNX6 404 aa13.93□□□□□ -0.18
LIG1-201ENST00000263274 TIAM2Q8IVF5 1701 aa13.93□□□□□ -0.18
LIG1-201ENST00000263274 POTEB3A0JP26 581 aa13.93□□□□□ -0.18
LIG1-201ENST00000263274 POTECB2RU33 542 aa13.93□□□□□ -0.18
LIG1-201ENST00000263274 PRPF6O94906 941 aaKnown RBP13.93□□□□□ -0.18
LIG1-201ENST00000263274 ACTN1P12814 892 aa13.93□□□□□ -0.18
LIG1-201ENST00000263274 AKR1B1P15121 316 aa13.93□□□□□ -0.18
LIG1-201ENST00000263274 KLRC1P26715 233 aa13.93□□□□□ -0.18
LIG1-201ENST00000263274 PPFIA1Q13136 1202 aa13.93□□□□□ -0.18
LIG1-201ENST00000263274 PDXDC1Q6P996 788 aa13.93□□□□□ -0.18
LIG1-201ENST00000263274 POTEBQ6S5H4 581 aa13.93□□□□□ -0.18
LIG1-201ENST00000263274 IFT20Q8IY31 132 aa13.93□□□□□ -0.18
LIG1-201ENST00000263274 DDX60Q8IY21 1712 aaKnown RBP13.93□□□□□ -0.18
LIG1-201ENST00000263274 EPHB4P54760 987 aa13.92□□□□□ -0.18
LIG1-201ENST00000263274 PRPF4BQ13523 1007 aaKnown RBP13.92□□□□□ -0.18
LIG1-201ENST00000263274 RNF187Q5TA31 235 aaPredicted RBP13.92□□□□□ -0.18
LIG1-201ENST00000263274 FGFBP2Q9BYJ0 223 aa13.92□□□□□ -0.18
LIG1-201ENST00000263274 YY1AP1Q9H869 796 aa13.92□□□□□ -0.18
LIG1-201ENST00000263274 STK17AQ9UEE5 414 aa13.92□□□□□ -0.18
LIG1-201ENST00000263274 PAPPAQ13219 1627 aa13.92□□□□□ -0.18
LIG1-201ENST00000263274 GLI1P08151 1106 aa13.92□□□□□ -0.18
LIG1-201ENST00000263274 TRADDQ15628 312 aa13.92□□□□□ -0.18
LIG1-201ENST00000263274 ECM1Q16610 540 aa13.92□□□□□ -0.18
LIG1-201ENST00000263274 TLR10Q9BXR5 811 aa13.92□□□□□ -0.18
LIG1-201ENST00000263274 TRIM31Q9BZY9 425 aa13.92□□□□□ -0.18
LIG1-201ENST00000263274 FAM153BP0C7A2 387 aa13.92□□□□□ -0.18
LIG1-201ENST00000263274 PDHBP11177 359 aa13.92□□□□□ -0.18
LIG1-201ENST00000263274 GPSM2P81274 684 aa13.92□□□□□ -0.18
LIG1-201ENST00000263274 CYP4A11Q02928 519 aa13.92□□□□□ -0.18
LIG1-201ENST00000263274 TCP10Q12799 353 aa13.92□□□□□ -0.18
LIG1-201ENST00000263274 NNTQ13423 1086 aa13.92□□□□□ -0.18
LIG1-201ENST00000263274 ASIC2Q16515 512 aa13.92□□□□□ -0.18
LIG1-201ENST00000263274 FAM153CQ494X1 144 aa13.92□□□□□ -0.18
LIG1-201ENST00000263274 SLC10A5Q5PT55 438 aa13.92□□□□□ -0.18
LIG1-201ENST00000263274 HAUS3Q68CZ6 603 aa13.92□□□□□ -0.18
LIG1-201ENST00000263274 CCDC65Q8IXS2 484 aa13.92□□□□□ -0.18
LIG1-201ENST00000263274 AP1M1Q9BXS5 423 aa13.92□□□□□ -0.18
LIG1-201ENST00000263274 PSTPIP2Q9H939 334 aa13.92□□□□□ -0.18
LIG1-201ENST00000263274 FAM153AQ9UHL3 310 aa13.92□□□□□ -0.18
LIG1-201ENST00000263274 GGA1Q9UJY5 639 aa13.92□□□□□ -0.18
LIG1-201ENST00000263274 USP17L10C9JJH3 530 aa13.91□□□□□ -0.18
LIG1-201ENST00000263274 AARSP49588 968 aaKnown RBP eCLIP13.91□□□□□ -0.182e-6■■■■□ 24
LIG1-201ENST00000263274 RBM5P52756 815 aaKnown RBP eCLIP13.91□□□□□ -0.18
LIG1-201ENST00000263274 LRRC63Q05C16 580 aa13.91□□□□□ -0.18
LIG1-201ENST00000263274 PABPC4Q13310 644 aaKnown RBP eCLIP13.91□□□□□ -0.182e-6■■■■□ 26.1
LIG1-201ENST00000263274 ADAT2Q7Z6V5 191 aaKnown RBP13.91□□□□□ -0.18
LIG1-201ENST00000263274 AMIGO3Q86WK7 504 aa13.91□□□□□ -0.18
LIG1-201ENST00000263274 ZIM3Q96PE6 472 aa13.91□□□□□ -0.18
LIG1-201ENST00000263274 SPATA31A6Q5VVP1 1343 aa13.91□□□□□ -0.18
LIG1-201ENST00000263274 A0A087X0T9 212 aa13.91□□□□□ -0.18
LIG1-201ENST00000263274 PVALEFA0A1B0GWK0 134 aa13.91□□□□□ -0.18
LIG1-201ENST00000263274 A0A1W2PQJ5 194 aa13.91□□□□□ -0.18
LIG1-201ENST00000263274 RPS6KA4O75676 772 aa13.91□□□□□ -0.18
LIG1-201ENST00000263274 FAM228BP0C875 321 aa13.91□□□□□ -0.18
LIG1-201ENST00000263274 MAGEA9P43362 315 aa13.91□□□□□ -0.18
LIG1-201ENST00000263274 MRPL12P52815 198 aaKnown RBP13.91□□□□□ -0.18
LIG1-201ENST00000263274 KCNMA1Q12791 1236 aa13.91□□□□□ -0.18
LIG1-201ENST00000263274 USH1GQ495M9 461 aa13.91□□□□□ -0.18
LIG1-201ENST00000263274 TRAPPC3LQ5T215 181 aa13.91□□□□□ -0.18
LIG1-201ENST00000263274 KLHDC7AQ5VTJ3 777 aa13.91□□□□□ -0.18
LIG1-201ENST00000263274 MMGT1Q8N4V1 131 aa13.91□□□□□ -0.18
LIG1-201ENST00000263274 MXD3Q9BW11 206 aa13.91□□□□□ -0.18
LIG1-201ENST00000263274 RTFDC1Q9BY42 306 aaPredicted RBP13.91□□□□□ -0.18
LIG1-201ENST00000263274 LEMD3Q9Y2U8 911 aa13.91□□□□□ -0.18
LIG1-201ENST00000263274 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.91□□□□□ -0.18
LIG1-201ENST00000263274 GOLGA6L10A6NI86 522 aa13.91□□□□□ -0.18
LIG1-201ENST00000263274 KIAA0754O94854 1291 aa13.91□□□□□ -0.18
LIG1-201ENST00000263274 GRAPQ13588 217 aa13.91□□□□□ -0.18
LIG1-201ENST00000263274 CEP85LQ5SZL2 805 aa13.91□□□□□ -0.18
LIG1-201ENST00000263274 NAA35Q5VZE5 725 aa13.91□□□□□ -0.18
LIG1-201ENST00000263274 GRAPLQ8TC17 118 aaPredicted RBP13.91□□□□□ -0.18
LIG1-201ENST00000263274 AENQ8WTP8 325 aaKnown RBP13.91□□□□□ -0.18
LIG1-201ENST00000263274 EMILIN3Q9NT22 766 aa13.91□□□□□ -0.18
LIG1-201ENST00000263274 UTRNP46939 3433 aa13.9□□□□□ -0.18
LIG1-201ENST00000263274 SFI1A8K8P3 1242 aa13.9□□□□□ -0.18
LIG1-201ENST00000263274 CETN3O15182 167 aa13.9□□□□□ -0.18
LIG1-201ENST00000263274 CLIC2O15247 247 aa13.9□□□□□ -0.18
LIG1-201ENST00000263274 NR2F2P24468 414 aa13.9□□□□□ -0.18
LIG1-201ENST00000263274 GUCY1A3Q02108 690 aa13.9□□□□□ -0.18
LIG1-201ENST00000263274 C16orf86Q6ZW13 317 aa13.9□□□□□ -0.18
LIG1-201ENST00000263274 ADGRF4Q8IZF3 695 aa13.9□□□□□ -0.18
LIG1-201ENST00000263274 PPM1EQ8WY54 764 aa13.9□□□□□ -0.18
LIG1-201ENST00000263274 CUL5Q93034 780 aa13.9□□□□□ -0.18
LIG1-201ENST00000263274 NCAPGQ9BPX3 1015 aa13.9□□□□□ -0.18
LIG1-201ENST00000263274 LRRC27Q9C0I9 530 aa13.9□□□□□ -0.18
LIG1-201ENST00000263274 PCDHB13Q9Y5F0 798 aa13.9□□□□□ -0.18
LIG1-201ENST00000263274 MYH14Q7Z406 1995 aaKnown RBP13.9□□□□□ -0.18
LIG1-201ENST00000263274 DISP2A7MBM2 1401 aa13.9□□□□□ -0.18
LIG1-201ENST00000263274 ATP2C2O75185 946 aa13.9□□□□□ -0.18
LIG1-201ENST00000263274 PLA2G4BP0C869 781 aa13.9□□□□□ -0.18
LIG1-201ENST00000263274 PLCG2P16885 1265 aa13.9□□□□□ -0.18
LIG1-201ENST00000263274 RPS6KA1Q15418 735 aa13.9□□□□□ -0.18
LIG1-201ENST00000263274 DDX42Q86XP3 938 aaKnown RBP eCLIP13.9□□□□□ -0.18
LIG1-201ENST00000263274 ANKS1AQ92625 1134 aa13.9□□□□□ -0.18
LIG1-201ENST00000263274 FAM169AQ9Y6X4 670 aa13.9□□□□□ -0.18
LIG1-201ENST00000263274 SHANK3Q9BYB0 1731 aa13.9□□□□□ -0.18
LIG1-201ENST00000263274 CACNA1SQ13698 1873 aa13.9□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms