RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 KARSQ15046 597 aaKnown RBP9.73□□□□□ -0.85
VPS4B-201ENST00000238497 CCDC178Q5BJE1 867 aa9.73□□□□□ -0.85
VPS4B-201ENST00000238497 PURBQ96QR8 312 aaKnown RBP9.73□□□□□ -0.85
VPS4B-201ENST00000238497 FOXP1Q9H334 677 aaPredicted RBP9.73□□□□□ -0.85
VPS4B-201ENST00000238497 A1CFQ9NQ94 594 aaKnown RBP9.73□□□□□ -0.85
VPS4B-201ENST00000238497 RBM28Q9NW13 759 aaKnown RBP9.73□□□□□ -0.85
VPS4B-201ENST00000238497 OGDHLQ9ULD0 1010 aa9.73□□□□□ -0.85
VPS4B-201ENST00000238497 CYBAP13498 195 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 ZNF543Q08ER8 600 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 MUM1L1Q5H9M0 696 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 OLFML2BQ68BL8 750 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 LHX8Q68G74 356 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 DGKHQ86XP1 1220 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 FBXL16Q8N461 479 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 KIAA1524Q8TCG1 905 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 SAMSN1Q9NSI8 373 aaKnown RBP9.72□□□□□ -0.85
VPS4B-201ENST00000238497 PRKAG2Q9UGJ0 569 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 SYNPO2Q9UMS6 1093 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 COLQQ9Y215 455 aaPredicted RBP9.72□□□□□ -0.85
VPS4B-201ENST00000238497 PRPF3O43395 683 aaKnown RBP9.72□□□□□ -0.85
VPS4B-201ENST00000238497 PPP6R2O75170 966 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 FGRP09769 529 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 C6orf222P0C671 652 aaPredicted RBP9.72□□□□□ -0.85
VPS4B-201ENST00000238497 CCT6AP40227 531 aaKnown RBP9.72□□□□□ -0.85
VPS4B-201ENST00000238497 UBA7P41226 1012 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 ADCYAP1R1P41586 468 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 BAATQ14032 418 aaPredicted RBP9.72□□□□□ -0.85
VPS4B-201ENST00000238497 RRAGBQ5VZM2 374 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 RESP18Q5W5W9 173 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 PIGSQ96S52 555 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 SPC25Q9HBM1 224 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.72□□□□□ -0.85
VPS4B-201ENST00000238497 SMCHD1A6NHR9 2005 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 CCNT1O60563 726 aaKnown RBP9.72□□□□□ -0.85
VPS4B-201ENST00000238497 ADKP55263 362 aaKnown RBP9.72□□□□□ -0.85
VPS4B-201ENST00000238497 MYL5Q02045 173 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 ZNF792Q3KQV3 632 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 GPATCH4Q5T3I0 446 aaKnown RBP9.72□□□□□ -0.85
VPS4B-201ENST00000238497 ARMCX2Q7L311 632 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 LRRC8AQ8IWT6 810 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 BLIDQ8IZY5 108 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 CCAR2Q8N163 923 aaKnown RBP9.72□□□□□ -0.85
VPS4B-201ENST00000238497 ANKLE1Q8NAG6 615 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 TCP11L1Q9NUJ3 509 aa9.72□□□□□ -0.85
VPS4B-201ENST00000238497 FBXO2Q9UK22 296 aaPredicted RBP9.72□□□□□ -0.85
VPS4B-201ENST00000238497 NFIBO00712 420 aa9.71□□□□□ -0.85
VPS4B-201ENST00000238497 AKR1A1P14550 325 aa9.71□□□□□ -0.85
VPS4B-201ENST00000238497 OAZ1P54368 228 aa9.71□□□□□ -0.85
VPS4B-201ENST00000238497 NAA30Q147X3 362 aaPredicted RBP9.71□□□□□ -0.85
VPS4B-201ENST00000238497 RNF180Q86T96 592 aa9.71□□□□□ -0.85
VPS4B-201ENST00000238497 PLA2G4DQ86XP0 818 aa9.71□□□□□ -0.85
VPS4B-201ENST00000238497 GJA10Q969M2 543 aa9.71□□□□□ -0.85
VPS4B-201ENST00000238497 ZHX3Q9H4I2 956 aa9.71□□□□□ -0.85
VPS4B-201ENST00000238497 MYH4Q9Y623 1939 aa9.71□□□□□ -0.85
VPS4B-201ENST00000238497 SMCO2A6NFE2 343 aa9.71□□□□□ -0.86
VPS4B-201ENST00000238497 TPM3P06753 285 aa9.71□□□□□ -0.86
VPS4B-201ENST00000238497 TXKP42681 527 aa9.71□□□□□ -0.86
VPS4B-201ENST00000238497 PTPN14Q15678 1187 aa9.71□□□□□ -0.86
VPS4B-201ENST00000238497 TYW1BQ6NUM6 668 aa9.71□□□□□ -0.86
VPS4B-201ENST00000238497 MAN1B1Q9UKM7 699 aa9.71□□□□□ -0.86
VPS4B-201ENST00000238497 FAM184BQ9ULE4 1060 aa9.71□□□□□ -0.86
VPS4B-201ENST00000238497 A0A087X0B3 334 aa9.71□□□□□ -0.86
VPS4B-201ENST00000238497 RIOK3O14730 519 aaKnown RBP9.71□□□□□ -0.86
VPS4B-201ENST00000238497 ICAM1P05362 532 aa9.71□□□□□ -0.86
VPS4B-201ENST00000238497 TXLNAP40222 546 aa9.71□□□□□ -0.86
VPS4B-201ENST00000238497 STAT6P42226 847 aa9.71□□□□□ -0.86
VPS4B-201ENST00000238497 ACVR2BQ13705 512 aa9.71□□□□□ -0.86
VPS4B-201ENST00000238497 CDC37Q16543 378 aaPredicted RBP9.71□□□□□ -0.86
VPS4B-201ENST00000238497 RNF207Q6ZRF8 634 aa9.71□□□□□ -0.86
VPS4B-201ENST00000238497 RBM43Q6ZSC3 357 aaKnown RBP9.71□□□□□ -0.86
VPS4B-201ENST00000238497 PCMTD1Q96MG8 357 aaPredicted RBP9.71□□□□□ -0.86
VPS4B-201ENST00000238497 LAMA3Q16787 3333 aa9.7□□□□□ -0.86
VPS4B-201ENST00000238497 CAVIN2O95810 425 aa9.7□□□□□ -0.86
VPS4B-201ENST00000238497 MDM2Q00987 491 aaPredicted RBP9.7□□□□□ -0.86
VPS4B-201ENST00000238497 GNASQ5JWF2 1037 aa9.7□□□□□ -0.86
VPS4B-201ENST00000238497 ZFP91Q96JP5 570 aaPredicted RBP9.7□□□□□ -0.86
VPS4B-201ENST00000238497 TMEM260Q9NX78 707 aa9.7□□□□□ -0.86
VPS4B-201ENST00000238497 ZNF536O15090 1300 aa9.7□□□□□ -0.86
VPS4B-201ENST00000238497 MYO9BQ13459 2157 aa9.7□□□□□ -0.86
VPS4B-201ENST00000238497 ATP2A1O14983 1001 aa9.7□□□□□ -0.86
VPS4B-201ENST00000238497 DDAH1O94760 285 aa9.7□□□□□ -0.86
VPS4B-201ENST00000238497 IDEP14735 1019 aa9.7□□□□□ -0.86
VPS4B-201ENST00000238497 TECP42680 631 aa9.7□□□□□ -0.86
VPS4B-201ENST00000238497 IRX5P78411 483 aaPredicted RBP9.7□□□□□ -0.86
VPS4B-201ENST00000238497 RAD51AP2Q09MP3 1159 aa9.7□□□□□ -0.86
VPS4B-201ENST00000238497 TKFCQ3LXA3 575 aa9.7□□□□□ -0.86
VPS4B-201ENST00000238497 FBXO16Q8IX29 292 aaPredicted RBP9.7□□□□□ -0.86
VPS4B-201ENST00000238497 LBHD1Q9BQE6 289 aaPredicted RBP9.7□□□□□ -0.86
VPS4B-201ENST00000238497 PHF20Q9BVI0 1012 aa9.7□□□□□ -0.86
VPS4B-201ENST00000238497 VPS16Q9H269 839 aa9.7□□□□□ -0.86
VPS4B-201ENST00000238497 ABHD16BQ9H3Z7 469 aa9.7□□□□□ -0.86
VPS4B-201ENST00000238497 DIS3Q9Y2L1 958 aaKnown RBP9.7□□□□□ -0.86
VPS4B-201ENST00000238497 SRPRBQ9Y5M8 271 aaKnown RBP9.7□□□□□ -0.86
VPS4B-201ENST00000238497 PQBP1O60828 265 aaKnown RBP9.69□□□□□ -0.86
VPS4B-201ENST00000238497 SNAI1O95863 264 aaPredicted RBP9.69□□□□□ -0.86
VPS4B-201ENST00000238497 CFBP00751 764 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 TPM2P07951 284 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 LRRC41Q15345 812 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 LRRC26Q2I0M4 334 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 WWC2Q6AWC2 1192 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms