RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W CBP4P37267 147 aa0.71□□□□□ -2.3
PRP42YDR235W NOP4P37838 685 aaKnown RBP0.71□□□□□ -2.3
PRP42YDR235W ARA1P38115 344 aa0.71□□□□□ -2.3
PRP42YDR235W YBR137WP38276 179 aa0.71□□□□□ -2.3
PRP42YDR235W KEL1P38853 1164 aaKnown RBP0.71□□□□□ -2.3
PRP42YDR235W MST28P39552 234 aa0.71□□□□□ -2.3
PRP42YDR235W NOP16P40007 231 aaKnown RBP0.71□□□□□ -2.3
PRP42YDR235W YER186CP40101 306 aa0.71□□□□□ -2.3
PRP42YDR235W SYG1P40528 902 aa0.71□□□□□ -2.3
PRP42YDR235W PFS2P42841 465 aaKnown RBP0.71□□□□□ -2.3
PRP42YDR235W RMD8P43620 662 aa0.71□□□□□ -2.3
PRP42YDR235W PET130P47065 347 aa0.71□□□□□ -2.3
PRP42YDR235W URB2P47108 1174 aa0.71□□□□□ -2.3
PRP42YDR235W OCA1P50946 238 aaPredicted RBP0.71□□□□□ -2.3
PRP42YDR235W PNG1Q02890 363 aa0.71□□□□□ -2.3
PRP42YDR235W YDR239CQ03780 787 aa0.71□□□□□ -2.3
PRP42YDR235W PDS5Q04264 1277 aa0.71□□□□□ -2.3
PRP42YDR235W YDR056CQ12025 205 aa0.71□□□□□ -2.3
PRP42YDR235W YRM1Q12340 786 aa0.71□□□□□ -2.3
PRP42YDR235W RRD2Q12461 358 aa0.71□□□□□ -2.3
PRP42YDR235W YDL007C-AQ2V2Q0 85 aa0.71□□□□□ -2.3
PRP42YDR235W CYC3P06182 269 aa0.7□□□□□ -2.3
PRP42YDR235W DFR1P07807 211 aaKnown RBP RIP-Chip data0.7□□□□□ -2.3not detected
PRP42YDR235W GFD2P25370 566 aaKnown RBP0.7□□□□□ -2.3
PRP42YDR235W PRD1P25375 712 aa0.7□□□□□ -2.3
PRP42YDR235W KAR9P32526 644 aa0.7□□□□□ -2.3
PRP42YDR235W MRE11P32829 692 aa0.7□□□□□ -2.3
PRP42YDR235W CST26P38226 397 aa0.7□□□□□ -2.3
PRP42YDR235W MUM2P38236 366 aa0.7□□□□□ -2.3
PRP42YDR235W MIG3P39943 394 aa0.7□□□□□ -2.3
PRP42YDR235W DFG10P40526 253 aa0.7□□□□□ -2.3
PRP42YDR235W LAM5P43560 674 aa0.7□□□□□ -2.3
PRP42YDR235W UPF3P48412 387 aaKnown RBP0.7□□□□□ -2.3
PRP42YDR235W FLC3P53121 802 aa0.7□□□□□ -2.3
PRP42YDR235W YGL108CP53139 140 aa0.7□□□□□ -2.3
PRP42YDR235W PCP1P53259 346 aa0.7□□□□□ -2.3
PRP42YDR235W VPS75P53853 264 aa0.7□□□□□ -2.3
PRP42YDR235W PPM1Q04081 328 aa0.7□□□□□ -2.3
PRP42YDR235W AIM32Q04689 311 aa0.7□□□□□ -2.3
PRP42YDR235W SOV1Q04748 898 aa0.7□□□□□ -2.3
PRP42YDR235W MFB1Q04922 465 aa0.7□□□□□ -2.3
PRP42YDR235W YLL032CQ07834 825 aaKnown RBP RIP-Chip data0.7□□□□□ -2.3not detected
PRP42YDR235W MUM3Q08750 479 aa0.7□□□□□ -2.3
PRP42YDR235W AHC1Q12433 566 aa0.7□□□□□ -2.3
PRP42YDR235W YML133CQ03099 1374 aa0.69□□□□□ -2.3
PRP42YDR235W YLL067CQ07888 1374 aa0.69□□□□□ -2.3
PRP42YDR235W YLL066CQ99208 1374 aa0.69□□□□□ -2.3
PRP42YDR235W GCN4P03069 281 aa0.69□□□□□ -2.3
PRP42YDR235W ATP10P18496 279 aa0.69□□□□□ -2.3
PRP42YDR235W OLE1P21147 510 aaKnown RBP0.69□□□□□ -2.3
PRP42YDR235W IDH2P28241 369 aaKnown RBP0.69□□□□□ -2.3
PRP42YDR235W AFG1P32317 509 aa0.69□□□□□ -2.3
PRP42YDR235W SMY1P32364 656 aaKnown RBP0.69□□□□□ -2.3
PRP42YDR235W REC114P32841 428 aa0.69□□□□□ -2.3
PRP42YDR235W CSE2P33308 149 aa0.69□□□□□ -2.3
PRP42YDR235W YCR041WP37265 110 aa0.69□□□□□ -2.3
PRP42YDR235W THI2P38141 450 aa0.69□□□□□ -2.3
PRP42YDR235W YEL057CP39983 233 aa0.69□□□□□ -2.3
PRP42YDR235W YMR147WP40218 223 aaKnown RBP0.69□□□□□ -2.3
PRP42YDR235W YIP1P53039 248 aa0.69□□□□□ -2.3
PRP42YDR235W RMD9P53140 646 aaKnown RBP0.69□□□□□ -2.3
PRP42YDR235W TWF1P53250 332 aa0.69□□□□□ -2.3
PRP42YDR235W ARE2P53629 642 aaKnown RBP0.69□□□□□ -2.3
PRP42YDR235W DSL1P53847 754 aa0.69□□□□□ -2.3
PRP42YDR235W NCS2P53923 493 aaPredicted RBP0.69□□□□□ -2.3
PRP42YDR235W DIA1P54005 336 aa0.69□□□□□ -2.3
PRP42YDR235W SLG1P54867 378 aa0.69□□□□□ -2.3
PRP42YDR235W RPT6Q01939 405 aaKnown RBP0.69□□□□□ -2.3
PRP42YDR235W PLP2Q12017 286 aa0.69□□□□□ -2.3
PRP42YDR235W SEC39Q12745 709 aa0.69□□□□□ -2.3
PRP42YDR235W TOP1P04786 769 aa0.68□□□□□ -2.3
PRP42YDR235W RHO2P06781 192 aa0.68□□□□□ -2.3
PRP42YDR235W MET8P15807 274 aa0.68□□□□□ -2.3
PRP42YDR235W RPI1P23250 407 aaKnown RBP0.68□□□□□ -2.3
PRP42YDR235W OCA4P25366 362 aa0.68□□□□□ -2.3
PRP42YDR235W SPB1P25582 841 aaPredicted RBP0.68□□□□□ -2.3
PRP42YDR235W TIP1P27654 210 aaPredicted RBP0.68□□□□□ -2.3
PRP42YDR235W RAD14P28519 371 aa0.68□□□□□ -2.3
PRP42YDR235W FMT1P32785 401 aa0.68□□□□□ -2.3
PRP42YDR235W PMT1P33775 817 aa0.68□□□□□ -2.3
PRP42YDR235W SPT10P35208 640 aa0.68□□□□□ -2.3
PRP42YDR235W CMC1P36064 111 aa0.68□□□□□ -2.3
PRP42YDR235W SPO22P40511 975 aa0.68□□□□□ -2.3
PRP42YDR235W MET28P40573 187 aa0.68□□□□□ -2.3
PRP42YDR235W SSN8P47821 323 aa0.68□□□□□ -2.3
PRP42YDR235W YGR149WP48236 432 aa0.68□□□□□ -2.3
PRP42YDR235W CRH1P53301 507 aa0.68□□□□□ -2.3
PRP42YDR235W MKC7P53379 596 aa0.68□□□□□ -2.3
PRP42YDR235W FRE4P53746 719 aa0.68□□□□□ -2.3
PRP42YDR235W YIF1P53845 314 aaKnown RBP0.68□□□□□ -2.3
PRP42YDR235W MRPS16Q02608 121 aa0.68□□□□□ -2.3
PRP42YDR235W YDR387CQ04162 555 aa0.68□□□□□ -2.3
PRP42YDR235W HSP31Q04432 237 aa0.68□□□□□ -2.3
PRP42YDR235W MRD1Q06106 887 aaKnown RBP0.68□□□□□ -2.3
PRP42YDR235W DNL4Q08387 944 aaPredicted RBP0.68□□□□□ -2.3
PRP42YDR235W TIM18Q08749 192 aa0.68□□□□□ -2.3
PRP42YDR235W ATG29Q12092 213 aa0.68□□□□□ -2.3
PRP42YDR235W YPR022CQ12139 1133 aa0.68□□□□□ -2.3
PRP42YDR235W PKH2Q12236 1081 aaKnown RBP0.68□□□□□ -2.3
PRP42YDR235W TEF1P02994 458 aaKnown RBP0.67□□□□□ -2.3
Retrieved 100 of 5,963 RNA–protein pairs in 21.4 ms