RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 OSBPL3Q9H4L5 887 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 HBS1LQ9Y450 684 aaKnown RBP6.23□□□□□ -1.41
SCN1A-216ENST00000637968 SART1O43290 800 aaKnown RBP6.22□□□□□ -1.41
SCN1A-216ENST00000637968 MAGOHP61326 146 aaKnown RBP6.22□□□□□ -1.41
SCN1A-216ENST00000637968 PHEXP78562 749 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 WTAPQ15007 396 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 DDB1Q16531 1140 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 TTC30BQ8N4P2 665 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.22□□□□□ -1.41
SCN1A-216ENST00000637968 LSM14AQ8ND56 463 aaKnown RBP6.22□□□□□ -1.41
SCN1A-216ENST00000637968 MAGOHBQ96A72 148 aaKnown RBP6.22□□□□□ -1.41
SCN1A-216ENST00000637968 USP28Q96RU2 1077 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 SLC7A5P2Q9GIP4 190 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 TSKSQ9UJT2 592 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 YTHDC2Q9H6S0 1430 aaKnown RBP6.22□□□□□ -1.41
SCN1A-216ENST00000637968 AP3B1O00203 1094 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 RGS16O15492 202 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-216ENST00000637968 LARGE1O95461 756 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 CCDC159P0C7I6 412 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 VAV1P15498 845 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 PORP16435 677 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-216ENST00000637968 IFNAR2P48551 515 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 DHX9Q08211 1270 aaKnown RBP6.22□□□□□ -1.41
SCN1A-216ENST00000637968 WASHC5Q12768 1159 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 AGBL2Q5U5Z8 902 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 LMBRD2Q68DH5 695 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-216ENST00000637968 PACS1Q6VY07 963 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 ANKRD13BQ86YJ7 626 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 HPS3Q969F9 1004 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 CAVIN3Q969G5 261 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 DUSP9Q99956 384 aaKnown RBP6.22□□□□□ -1.41
SCN1A-216ENST00000637968 TIPINQ9BVW5 301 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 DCLRE1BQ9H816 532 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 KIF24Q5T7B8 1368 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 BIVM-ERCC5R4GMW8 1640 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 CCDC162PA2VCL2 907 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 RGL2O15211 777 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 TEX28O15482 410 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 TRPA1O75762 1119 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 UBOX5O94941 541 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 ASMTLO95671 621 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 ENDOUP21128 410 aaKnown RBP6.22□□□□□ -1.41
SCN1A-216ENST00000637968 FUT4P22083 530 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 HALP42357 657 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 MXI1P50539 228 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 NDUFA8P51970 172 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 KCNJ2P63252 427 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 HPCAP84074 193 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 SULT2A1Q06520 285 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 TNIP1Q15025 636 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 CYTH1Q15438 398 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 GSTA3Q16772 222 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 CATIPQ7Z7H3 387 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 MMGT1Q8N4V1 131 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 NSUN7Q8NE18 718 aaKnown RBP6.22□□□□□ -1.41
SCN1A-216ENST00000637968 GSDMBQ8TAX9 411 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 VMP1Q96GC9 406 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 PUS3Q9BZE2 481 aaKnown RBP6.22□□□□□ -1.41
SCN1A-216ENST00000637968 ATAD3AQ9NVI7 634 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 TESPA1A2RU30 521 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-216ENST00000637968 STRNO43815 780 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 CCT4P50991 539 aaKnown RBP6.22□□□□□ -1.41
SCN1A-216ENST00000637968 STAT2P52630 851 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 UBE4AQ14139 1066 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 SUZ12Q15022 739 aaKnown RBP6.22□□□□□ -1.41
SCN1A-216ENST00000637968 TMCO4Q5TGY1 634 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 B3GNT6Q6ZMB0 384 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 TRAPPC11Q7Z392 1133 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 SIRT2Q8IXJ6 389 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.22□□□□□ -1.41
SCN1A-216ENST00000637968 BBOF1Q8ND07 529 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 GABPB2Q8TAK5 448 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-216ENST00000637968 LRRC1Q9BTT6 524 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 SPATA16Q9BXB7 569 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 Q9H521 79 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 SH2D4AQ9H788 454 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 TIMMDC1Q9NPL8 285 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 USP15Q9Y4E8 981 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-216ENST00000637968 PPME1Q9Y570 386 aa6.22□□□□□ -1.41
SCN1A-216ENST00000637968 SMIM31A0A1B0GVY4 71 aa6.21□□□□□ -1.41
SCN1A-216ENST00000637968 CASQ2O14958 399 aaPredicted RBP6.21□□□□□ -1.41
SCN1A-216ENST00000637968 SPTLC1O15269 473 aa6.21□□□□□ -1.41
SCN1A-216ENST00000637968 ASAP2O43150 1006 aa6.21□□□□□ -1.41
SCN1A-216ENST00000637968 MFAP3LO75121 409 aa6.21□□□□□ -1.41
SCN1A-216ENST00000637968 SURF6O75683 361 aaKnown RBP6.21□□□□□ -1.41
SCN1A-216ENST00000637968 ASLP04424 464 aa6.21□□□□□ -1.41
SCN1A-216ENST00000637968 LDHCP07864 332 aa6.21□□□□□ -1.41
SCN1A-216ENST00000637968 ETS2P15036 469 aa6.21□□□□□ -1.41
SCN1A-216ENST00000637968 TCF7P36402 384 aaPredicted RBP6.21□□□□□ -1.41
SCN1A-216ENST00000637968 CCNFP41002 786 aa6.21□□□□□ -1.41
SCN1A-216ENST00000637968 ACADVLP49748 655 aa6.21□□□□□ -1.41
SCN1A-216ENST00000637968 RESTQ13127 1097 aa6.21□□□□□ -1.41
SCN1A-216ENST00000637968 WASHC4Q2M389 1173 aa6.21□□□□□ -1.41
SCN1A-216ENST00000637968 KCTD21Q4G0X4 260 aa6.21□□□□□ -1.41
SCN1A-216ENST00000637968 EMC10Q5UCC4 262 aa6.21□□□□□ -1.41
SCN1A-216ENST00000637968 TUBA3EQ6PEY2 450 aa6.21□□□□□ -1.41
SCN1A-216ENST00000637968 MARK2Q7KZI7 788 aaKnown RBP6.21□□□□□ -1.41
SCN1A-216ENST00000637968 ZNF713Q8N859 430 aaPredicted RBP6.21□□□□□ -1.41
SCN1A-216ENST00000637968 CEP295NLQ96MC4 621 aa6.21□□□□□ -1.41
SCN1A-216ENST00000637968 PLVAPQ9BX97 442 aa6.21□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms