RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 CCDC82Q8N4S0 544 aa13.43□□□□□ -0.26
CLN3-257ENST00000637110 COPS5Q92905 334 aa13.43□□□□□ -0.26
CLN3-257ENST00000637110 MAP3K14Q99558 947 aa13.43□□□□□ -0.26
CLN3-257ENST00000637110 SEZ6LQ9BYH1 1024 aa13.43□□□□□ -0.26
CLN3-257ENST00000637110 KCNH6Q9H252 994 aa13.43□□□□□ -0.26
CLN3-257ENST00000637110 PXMP2Q9NR77 195 aa13.43□□□□□ -0.26
CLN3-257ENST00000637110 RBM47A0AV96 593 aaKnown RBP13.42□□□□□ -0.26
CLN3-257ENST00000637110 REC8O95072 547 aa13.42□□□□□ -0.26
CLN3-257ENST00000637110 PLEKHA8P1O95397 391 aa13.42□□□□□ -0.26
CLN3-257ENST00000637110 NR3C2P08235 984 aa13.42□□□□□ -0.26
CLN3-257ENST00000637110 PFKMP08237 780 aa13.42□□□□□ -0.26
CLN3-257ENST00000637110 MYOGP15173 224 aa13.42□□□□□ -0.26
CLN3-257ENST00000637110 HSD17B4P51659 736 aa13.42□□□□□ -0.26
CLN3-257ENST00000637110 PSMC6P62333 389 aa13.42□□□□□ -0.26
CLN3-257ENST00000637110 NKX3-2P78367 333 aa13.42□□□□□ -0.26
CLN3-257ENST00000637110 ITGA7Q13683 1181 aa13.42□□□□□ -0.26
CLN3-257ENST00000637110 COL9A3Q14050 684 aaPredicted RBP13.42□□□□□ -0.26
CLN3-257ENST00000637110 CSPP1Q1MSJ5 1256 aa13.42□□□□□ -0.26
CLN3-257ENST00000637110 RASEFQ8IZ41 740 aa13.42□□□□□ -0.26
CLN3-257ENST00000637110 SAMD3Q8N6K7 520 aa13.42□□□□□ -0.26
CLN3-257ENST00000637110 SMARCC2Q8TAQ2 1214 aa13.42□□□□□ -0.26
CLN3-257ENST00000637110 KHSRPQ92945 711 aaKnown RBP eCLIP13.42□□□□□ -0.26
CLN3-257ENST00000637110 CUL5Q93034 780 aa13.42□□□□□ -0.26
CLN3-257ENST00000637110 POLR3EQ9NVU0 708 aa13.42□□□□□ -0.26
CLN3-257ENST00000637110 MAP3K20Q9NYL2 800 aaKnown RBP13.42□□□□□ -0.26
CLN3-257ENST00000637110 OPLAHO14841 1288 aa13.41□□□□□ -0.26
CLN3-257ENST00000637110 EIF3JO75822 258 aaKnown RBP13.41□□□□□ -0.26
CLN3-257ENST00000637110 CA3P07451 260 aa13.41□□□□□ -0.26
CLN3-257ENST00000637110 HMGB1P09429 215 aaKnown RBP13.41□□□□□ -0.26
CLN3-257ENST00000637110 SMARCA1P28370 1054 aa13.41□□□□□ -0.26
CLN3-257ENST00000637110 CCL23P55773 120 aa13.41□□□□□ -0.26
CLN3-257ENST00000637110 ADCK5Q3MIX3 580 aa13.41□□□□□ -0.26
CLN3-257ENST00000637110 FAM47CQ5HY64 1035 aa13.41□□□□□ -0.26
CLN3-257ENST00000637110 SRBD1Q8N5C6 995 aaKnown RBP13.41□□□□□ -0.26
CLN3-257ENST00000637110 FANCBQ8NB91 859 aa13.41□□□□□ -0.26
CLN3-257ENST00000637110 JAKMIP1Q96N16 626 aaKnown RBP13.41□□□□□ -0.26
CLN3-257ENST00000637110 UIMC1Q96RL1 719 aa13.41□□□□□ -0.26
CLN3-257ENST00000637110 SPZ1Q9BXG8 430 aa13.41□□□□□ -0.26
CLN3-257ENST00000637110 MRVI1Q9Y6F6 885 aa13.41□□□□□ -0.26
CLN3-257ENST00000637110 hCG_1642624A0A1W2PR95 340 aa13.4□□□□□ -0.26
CLN3-257ENST00000637110 RFXAPO00287 272 aa13.4□□□□□ -0.26
CLN3-257ENST00000637110 ZBTB43O43298 467 aa13.4□□□□□ -0.26
CLN3-257ENST00000637110 ARIH2O95376 493 aa13.4□□□□□ -0.26
CLN3-257ENST00000637110 GH1P01241 217 aa13.4□□□□□ -0.26
CLN3-257ENST00000637110 ALADP13716 330 aa13.4□□□□□ -0.26
CLN3-257ENST00000637110 LY6KQ17RY6 165 aa13.4□□□□□ -0.26
CLN3-257ENST00000637110 TSGA10IPQ3SY00 556 aa13.4□□□□□ -0.26
CLN3-257ENST00000637110 ZFP91Q96JP5 570 aaPredicted RBP13.4□□□□□ -0.26
CLN3-257ENST00000637110 PDCD2LQ9BRP1 358 aa13.4□□□□□ -0.26
CLN3-257ENST00000637110 MTG1Q9BT17 334 aaPredicted RBP13.4□□□□□ -0.26
CLN3-257ENST00000637110 BRWD1Q9NSI6 2320 aa13.4□□□□□ -0.26
CLN3-257ENST00000637110 KLF18A0A0U1RQI7 1052 aa13.39□□□□□ -0.27
CLN3-257ENST00000637110 SORBS3O60504 671 aa13.39□□□□□ -0.27
CLN3-257ENST00000637110 KPNA6O60684 536 aa13.39□□□□□ -0.27
CLN3-257ENST00000637110 ACTN1P12814 892 aa13.39□□□□□ -0.27
CLN3-257ENST00000637110 CPA1P15085 419 aa13.39□□□□□ -0.27
CLN3-257ENST00000637110 CCND2P30279 289 aa13.39□□□□□ -0.27
CLN3-257ENST00000637110 HSPA4P34932 840 aa13.39□□□□□ -0.27
CLN3-257ENST00000637110 EXOSC10Q01780 885 aaKnown RBP13.39□□□□□ -0.27
CLN3-257ENST00000637110 NHLH1Q02575 133 aa13.39□□□□□ -0.27
CLN3-257ENST00000637110 PGM5Q15124 567 aa13.39□□□□□ -0.27
CLN3-257ENST00000637110 RTN1Q16799 776 aa13.39□□□□□ -0.27
CLN3-257ENST00000637110 ERICH6BQ5W0A0 696 aa13.39□□□□□ -0.27
CLN3-257ENST00000637110 BLOC1S2Q6QNY1 142 aa13.39□□□□□ -0.27
CLN3-257ENST00000637110 SGMS1Q86VZ5 419 aa13.39□□□□□ -0.27
CLN3-257ENST00000637110 ARNTL2Q8WYA1 636 aa13.39□□□□□ -0.27
CLN3-257ENST00000637110 NOC4LQ9BVI4 516 aaKnown RBP13.39□□□□□ -0.27
CLN3-257ENST00000637110 CERS4Q9HA82 394 aa13.39□□□□□ -0.27
CLN3-257ENST00000637110 RBM28Q9NW13 759 aaKnown RBP13.39□□□□□ -0.27
CLN3-257ENST00000637110 UMODL1Q5DID0 1318 aa13.39□□□□□ -0.27
CLN3-257ENST00000637110 GOLGA8AA7E2F4 631 aa13.38□□□□□ -0.27
CLN3-257ENST00000637110 GOLGA8BA8MQT2 603 aa13.38□□□□□ -0.27
CLN3-257ENST00000637110 KIF28PB7ZC32 967 aa13.38□□□□□ -0.27
CLN3-257ENST00000637110 PURAQ00577 322 aaKnown RBP13.38□□□□□ -0.27
CLN3-257ENST00000637110 GHRHRQ02643 423 aa13.38□□□□□ -0.27
CLN3-257ENST00000637110 CCDC62Q6P9F0 684 aa13.38□□□□□ -0.27
CLN3-257ENST00000637110 APOA5Q6Q788 366 aa13.38□□□□□ -0.27
CLN3-257ENST00000637110 Q6ZUG5 572 aa13.38□□□□□ -0.27
CLN3-257ENST00000637110 TMTC3Q6ZXV5 915 aa13.38□□□□□ -0.27
CLN3-257ENST00000637110 HEATR3Q7Z4Q2 680 aa13.38□□□□□ -0.27
CLN3-257ENST00000637110 DHX37Q8IY37 1157 aaKnown RBP13.38□□□□□ -0.27
CLN3-257ENST00000637110 SLC43A3Q8NBI5 491 aa13.38□□□□□ -0.27
CLN3-257ENST00000637110 AFG1LQ8WV93 481 aa13.38□□□□□ -0.27
CLN3-257ENST00000637110 SLC9A7Q96T83 725 aa13.38□□□□□ -0.27
CLN3-257ENST00000637110 BRPF3Q9ULD4 1205 aa13.38□□□□□ -0.27
CLN3-257ENST00000637110 SNX14Q9Y5W7 946 aa13.38□□□□□ -0.27
CLN3-257ENST00000637110 A6NJR5 290 aa13.37□□□□□ -0.27
CLN3-257ENST00000637110 CASTP20810 708 aaKnown RBP13.37□□□□□ -0.27
CLN3-257ENST00000637110 PSMA5P28066 241 aa13.37□□□□□ -0.27
CLN3-257ENST00000637110 SSTR3P32745 418 aaPredicted RBP13.37□□□□□ -0.27
CLN3-257ENST00000637110 KRT40Q6A162 431 aa13.37□□□□□ -0.27
CLN3-257ENST00000637110 KCNV1Q6PIU1 500 aa13.37□□□□□ -0.27
CLN3-257ENST00000637110 USP17L6PQ6QN14 398 aa13.37□□□□□ -0.27
CLN3-257ENST00000637110 VSIG10LQ86VR7 867 aa13.37□□□□□ -0.27
CLN3-257ENST00000637110 GJD3Q8N144 294 aa13.37□□□□□ -0.27
CLN3-257ENST00000637110 IL31RAQ8NI17 732 aa13.37□□□□□ -0.27
CLN3-257ENST00000637110 PHOSPHO2Q8TCD6 241 aa13.37□□□□□ -0.27
CLN3-257ENST00000637110 PPP1R13LQ8WUF5 828 aa13.37□□□□□ -0.27
CLN3-257ENST00000637110 GPKOWQ92917 476 aaPredicted RBP eCLIP13.37□□□□□ -0.27
CLN3-257ENST00000637110 TRPV6Q9H1D0 765 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms