RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 SHCBP1Q8NEM2 672 aa20.73■□□□□ 0.91
CLN3-254ENST00000637050 RASSF8Q8NHQ8 419 aa20.73■□□□□ 0.91
CLN3-254ENST00000637050 CALML4Q96GE6 196 aa20.73■□□□□ 0.91
CLN3-254ENST00000637050 GRPEL1Q9HAV7 217 aa20.73■□□□□ 0.91
CLN3-254ENST00000637050 SLC26A4O43511 780 aa20.73■□□□□ 0.91
CLN3-254ENST00000637050 PSMD10O75832 226 aa20.73■□□□□ 0.91
CLN3-254ENST00000637050 PRR29P0C7W0 189 aa20.73■□□□□ 0.91
CLN3-254ENST00000637050 PLCG1P19174 1290 aa20.73■□□□□ 0.91
CLN3-254ENST00000637050 CCND2P30279 289 aa20.73■□□□□ 0.91
CLN3-254ENST00000637050 GCLCP48506 637 aaPredicted RBP20.73■□□□□ 0.91
CLN3-254ENST00000637050 GRB10Q13322 594 aa20.73■□□□□ 0.91
CLN3-254ENST00000637050 GRAMD1CQ8IYS0 662 aa20.73■□□□□ 0.91
CLN3-254ENST00000637050 DNERQ8NFT8 737 aa20.73■□□□□ 0.91
CLN3-254ENST00000637050 SNX29Q8TEQ0 813 aa20.73■□□□□ 0.91
CLN3-254ENST00000637050 NUDT12Q9BQG2 462 aa20.73■□□□□ 0.91
CLN3-254ENST00000637050 R3HDMLQ9H3Y0 253 aa20.73■□□□□ 0.91
CLN3-254ENST00000637050 CUEDC2Q9H467 287 aa20.73■□□□□ 0.91
CLN3-254ENST00000637050 MROH8Q9H579 483 aa20.73■□□□□ 0.91
CLN3-254ENST00000637050 PCDHA5Q9Y5H7 936 aa20.73■□□□□ 0.91
CLN3-254ENST00000637050 MANSC4A6NHS7 340 aaPredicted RBP20.72■□□□□ 0.91
CLN3-254ENST00000637050 SLC10A3P09131 477 aa20.72■□□□□ 0.91
CLN3-254ENST00000637050 MYCLP12524 364 aaPredicted RBP20.72■□□□□ 0.91
CLN3-254ENST00000637050 MRE11P49959 708 aa20.72■□□□□ 0.91
CLN3-254ENST00000637050 HYIQ5T013 277 aa20.72■□□□□ 0.91
CLN3-254ENST00000637050 NT5DC1Q5TFE4 455 aa20.72■□□□□ 0.91
CLN3-254ENST00000637050 SPATA20Q8TB22 786 aa20.72■□□□□ 0.91
CLN3-254ENST00000637050 LRRC15Q8TF66 581 aa20.72■□□□□ 0.91
CLN3-254ENST00000637050 PNMA5Q96PV4 448 aa20.72■□□□□ 0.91
CLN3-254ENST00000637050 MTRQ99707 1265 aa20.72■□□□□ 0.91
CLN3-254ENST00000637050 ZNF577Q9BSK1 485 aa20.72■□□□□ 0.91
CLN3-254ENST00000637050 WDR11Q9BZH6 1224 aa20.72■□□□□ 0.91
CLN3-254ENST00000637050 KCNH7Q9NS40 1196 aa20.72■□□□□ 0.91
CLN3-254ENST00000637050 MORF4L1Q9UBU8 362 aa20.72■□□□□ 0.91
CLN3-254ENST00000637050 AFMP43652 599 aa20.71■□□□□ 0.91
CLN3-254ENST00000637050 SARSP49591 514 aaKnown RBP20.71■□□□□ 0.91
CLN3-254ENST00000637050 ZRSR1Q15695 479 aaKnown RBP20.71■□□□□ 0.91
CLN3-254ENST00000637050 STX1AQ16623 288 aa20.71■□□□□ 0.91
CLN3-254ENST00000637050 LRCH2Q5VUJ6 765 aa20.71■□□□□ 0.91
CLN3-254ENST00000637050 OTOP1Q7RTM1 612 aa20.71■□□□□ 0.91
CLN3-254ENST00000637050 GPRC5AQ8NFJ5 357 aa20.71■□□□□ 0.91
CLN3-254ENST00000637050 IWS1Q96ST2 819 aa20.71■□□□□ 0.91
CLN3-254ENST00000637050 PARK7Q99497 189 aaKnown RBP20.71■□□□□ 0.91
CLN3-254ENST00000637050 PLIN2Q99541 437 aa20.71■□□□□ 0.91
CLN3-254ENST00000637050 RIT2Q99578 217 aa20.71■□□□□ 0.91
CLN3-254ENST00000637050 MAGEF1Q9HAY2 307 aa20.71■□□□□ 0.91
CLN3-254ENST00000637050 STK24Q9Y6E0 443 aa20.71■□□□□ 0.91
CLN3-254ENST00000637050 IPO5O00410 1097 aaKnown RBP20.7■□□□□ 0.91
CLN3-254ENST00000637050 CNTN2Q02246 1040 aa20.7■□□□□ 0.91
CLN3-254ENST00000637050 PPP2R5CQ13362 524 aa20.7■□□□□ 0.91
CLN3-254ENST00000637050 TMEM119Q4V9L6 283 aa20.7■□□□□ 0.91
CLN3-254ENST00000637050 L1TD1Q5T7N2 865 aaKnown RBP20.7■□□□□ 0.91
CLN3-254ENST00000637050 KBTBD4Q9NVX7 518 aa20.7■□□□□ 0.91
CLN3-254ENST00000637050 ANO10Q9NW15 660 aa20.7■□□□□ 0.91
CLN3-254ENST00000637050 STK17AQ9UEE5 414 aa20.7■□□□□ 0.91
CLN3-254ENST00000637050 ASTN1O14525 1302 aa20.7■□□□□ 0.9
CLN3-254ENST00000637050 STAM2O75886 525 aa20.7■□□□□ 0.9
CLN3-254ENST00000637050 TOMM70O94826 608 aa20.7■□□□□ 0.9
CLN3-254ENST00000637050 CCNA1P78396 465 aa20.7■□□□□ 0.9
CLN3-254ENST00000637050 DPYDQ12882 1025 aa20.7■□□□□ 0.9
CLN3-254ENST00000637050 MTMR1Q13613 665 aa20.7■□□□□ 0.9
CLN3-254ENST00000637050 ANO6Q4KMQ2 910 aa20.7■□□□□ 0.9
CLN3-254ENST00000637050 B3GNT9Q6UX72 402 aa20.7■□□□□ 0.9
CLN3-254ENST00000637050 ANKRD13CQ8N6S4 541 aa20.7■□□□□ 0.9
CLN3-254ENST00000637050 FAM133AQ8N9E0 248 aa20.7■□□□□ 0.9
CLN3-254ENST00000637050 CDK5RAP3Q96JB5 506 aa20.7■□□□□ 0.9
CLN3-254ENST00000637050 AGO4Q9HCK5 861 aaKnown RBP20.7■□□□□ 0.9
CLN3-254ENST00000637050 ZCCHC17Q9NP64 241 aaKnown RBP20.7■□□□□ 0.9
CLN3-254ENST00000637050 KDM3AQ9Y4C1 1321 aa20.69■□□□□ 0.9
CLN3-254ENST00000637050 FAM155AB1AL88 458 aaPredicted RBP20.69■□□□□ 0.9
CLN3-254ENST00000637050 POTEB2H3BUK9 544 aa20.69■□□□□ 0.9
CLN3-254ENST00000637050 GTPBP6O43824 516 aaPredicted RBP20.69■□□□□ 0.9
CLN3-254ENST00000637050 GAS7O60861 476 aa20.69■□□□□ 0.9
CLN3-254ENST00000637050 CAVIN2O95810 425 aa20.69■□□□□ 0.9
CLN3-254ENST00000637050 CCT6AP40227 531 aaKnown RBP20.69■□□□□ 0.9
CLN3-254ENST00000637050 NLRP12P59046 1061 aa20.69■□□□□ 0.9
CLN3-254ENST00000637050 HAUS3Q68CZ6 603 aa20.69■□□□□ 0.9
CLN3-254ENST00000637050 NCAPH2Q6IBW4 605 aa20.69■□□□□ 0.9
CLN3-254ENST00000637050 ERMNQ8TAM6 284 aa20.69■□□□□ 0.9
CLN3-254ENST00000637050 SMARCE1Q969G3 411 aa20.69■□□□□ 0.9
CLN3-254ENST00000637050 GPRASP2Q96D09 838 aa20.69■□□□□ 0.9
CLN3-254ENST00000637050 INPP4AQ96PE3 977 aaPredicted RBP20.69■□□□□ 0.9
CLN3-254ENST00000637050 NT5C3AQ9H0P0 336 aa20.69■□□□□ 0.9
CLN3-254ENST00000637050 PORCNQ9H237 461 aa20.69■□□□□ 0.9
CLN3-254ENST00000637050 BLOC1S4Q9NUP1 217 aa20.69■□□□□ 0.9
CLN3-254ENST00000637050 DNAJC25-GNG10A0A024R161 153 aa20.68■□□□□ 0.9
CLN3-254ENST00000637050 A0A087WWV3 80 aa20.68■□□□□ 0.9
CLN3-254ENST00000637050 SOWAHBA6NEL2 793 aa20.68■□□□□ 0.9
CLN3-254ENST00000637050 TMEM88BA6NKF7 163 aa20.68■□□□□ 0.9
CLN3-254ENST00000637050 BIN1O00499 593 aa20.68■□□□□ 0.9
CLN3-254ENST00000637050 MAFGO15525 162 aa20.68■□□□□ 0.9
CLN3-254ENST00000637050 SMC2O95347 1197 aa20.68■□□□□ 0.9
CLN3-254ENST00000637050 ALDH5A1P51649 535 aaPredicted RBP20.68■□□□□ 0.9
CLN3-254ENST00000637050 ECM1Q16610 540 aa20.68■□□□□ 0.9
CLN3-254ENST00000637050 STAMQ92783 540 aa20.68■□□□□ 0.9
CLN3-254ENST00000637050 CCDC102AQ96A19 550 aa20.68■□□□□ 0.9
CLN3-254ENST00000637050 HHIPL1Q96JK4 782 aa20.68■□□□□ 0.9
CLN3-254ENST00000637050 TEKT3Q9BXF9 490 aa20.68■□□□□ 0.9
CLN3-254ENST00000637050 ADD3Q9UEY8 706 aaKnown RBP20.68■□□□□ 0.9
CLN3-254ENST00000637050 EML1O00423 815 aa20.67■□□□□ 0.9
CLN3-254ENST00000637050 IGF2BP3O00425 579 aaKnown RBP eCLIP20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms