RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 ARHGAP4P98171 946 aa12.83□□□□□ -0.35
CLN6-217ENST00000636964 BIRC2Q13490 618 aa12.83□□□□□ -0.35
CLN6-217ENST00000636964 MCM6Q14566 821 aa12.83□□□□□ -0.35
CLN6-217ENST00000636964 CYP2W1Q8TAV3 490 aa12.83□□□□□ -0.35
CLN6-217ENST00000636964 HPS3Q969F9 1004 aa12.83□□□□□ -0.35
CLN6-217ENST00000636964 PNMA5Q96PV4 448 aa12.83□□□□□ -0.35
CLN6-217ENST00000636964 RASSF4Q9H2L5 321 aa12.83□□□□□ -0.35
CLN6-217ENST00000636964 INTS13Q9NVM9 706 aa12.83□□□□□ -0.35
CLN6-217ENST00000636964 ZNF18P17022 549 aa12.83□□□□□ -0.36
CLN6-217ENST00000636964 ORC2Q13416 577 aaPredicted RBP12.83□□□□□ -0.36
CLN6-217ENST00000636964 ECM1Q16610 540 aa12.83□□□□□ -0.36
CLN6-217ENST00000636964 ZNF658Q5TYW1 1059 aaPredicted RBP12.83□□□□□ -0.36
CLN6-217ENST00000636964 ANGEL2Q5VTE6 544 aaKnown RBP12.83□□□□□ -0.36
CLN6-217ENST00000636964 GLT8D2Q9H1C3 349 aa12.83□□□□□ -0.36
CLN6-217ENST00000636964 KLRC4O43908 158 aa12.83□□□□□ -0.36
CLN6-217ENST00000636964 OAS2P29728 719 aaKnown RBP12.83□□□□□ -0.36
CLN6-217ENST00000636964 STAT3P40763 770 aa12.83□□□□□ -0.36
CLN6-217ENST00000636964 ASIC1P78348 528 aa12.83□□□□□ -0.36
CLN6-217ENST00000636964 MAP3K10Q02779 954 aa12.83□□□□□ -0.36
CLN6-217ENST00000636964 SPATA1Q5VX52 437 aa12.83□□□□□ -0.36
CLN6-217ENST00000636964 KCNK18Q7Z418 384 aa12.83□□□□□ -0.36
CLN6-217ENST00000636964 TRPM4Q8TD43 1214 aa12.83□□□□□ -0.36
CLN6-217ENST00000636964 CHURC1Q8WUH1 139 aa12.83□□□□□ -0.36
CLN6-217ENST00000636964 ZSCAN26Q16670 478 aa12.82□□□□□ -0.36
CLN6-217ENST00000636964 KRT79Q5XKE5 535 aa12.82□□□□□ -0.36
CLN6-217ENST00000636964 SLC30A10Q6XR72 485 aa12.82□□□□□ -0.36
CLN6-217ENST00000636964 DYMQ7RTS9 669 aa12.82□□□□□ -0.36
CLN6-217ENST00000636964 NELFBQ8WX92 580 aa12.82□□□□□ -0.36
CLN6-217ENST00000636964 EEF2KMTQ96G04 330 aa12.82□□□□□ -0.36
CLN6-217ENST00000636964 BLOC1S4Q9NUP1 217 aa12.82□□□□□ -0.36
CLN6-217ENST00000636964 RMND1Q9NWS8 449 aa12.82□□□□□ -0.36
CLN6-217ENST00000636964 TRIM49BA6NDI0 452 aa12.82□□□□□ -0.36
CLN6-217ENST00000636964 FAM86B1E9PN63 330 aa12.82□□□□□ -0.36
CLN6-217ENST00000636964 FAM86B2P0C5J1 330 aa12.82□□□□□ -0.36
CLN6-217ENST00000636964 USP11P51784 963 aa12.82□□□□□ -0.36
CLN6-217ENST00000636964 ZKSCAN4Q969J2 545 aaPredicted RBP12.82□□□□□ -0.36
CLN6-217ENST00000636964 RAB34Q9BZG1 259 aa12.82□□□□□ -0.36
CLN6-217ENST00000636964 TRIM9Q9C026 710 aa12.82□□□□□ -0.36
CLN6-217ENST00000636964 LTBP3Q9NS15 1303 aa12.82□□□□□ -0.36
CLN6-217ENST00000636964 H7C1D1 291 aa12.82□□□□□ -0.36
CLN6-217ENST00000636964 CBFA2T2O43439 604 aa12.82□□□□□ -0.36
CLN6-217ENST00000636964 TADA3O75528 432 aa12.82□□□□□ -0.36
CLN6-217ENST00000636964 PRKG1Q13976 671 aa12.82□□□□□ -0.36
CLN6-217ENST00000636964 PDIA5Q14554 519 aa12.82□□□□□ -0.36
CLN6-217ENST00000636964 TRIM65Q6PJ69 517 aa12.82□□□□□ -0.36
CLN6-217ENST00000636964 TXLNBQ8N3L3 684 aa12.82□□□□□ -0.36
CLN6-217ENST00000636964 AGBL1Q96MI9 1066 aa12.82□□□□□ -0.36
CLN6-217ENST00000636964 SH2D4AQ9H788 454 aa12.82□□□□□ -0.36
CLN6-217ENST00000636964 DONSONQ9NYP3 566 aa12.82□□□□□ -0.36
CLN6-217ENST00000636964 FCER1AP12319 257 aa12.81□□□□□ -0.36
CLN6-217ENST00000636964 GCFC2P16383 781 aaKnown RBP12.81□□□□□ -0.36
CLN6-217ENST00000636964 EPS15P42566 896 aa12.81□□□□□ -0.36
CLN6-217ENST00000636964 PDE4DQ08499 809 aa12.81□□□□□ -0.36
CLN6-217ENST00000636964 AP3B2Q13367 1082 aa12.81□□□□□ -0.36
CLN6-217ENST00000636964 DLK2Q6UY11 383 aa12.81□□□□□ -0.36
CLN6-217ENST00000636964 CPXCR1Q8N123 301 aa12.81□□□□□ -0.36
CLN6-217ENST00000636964 SYNPO2Q9UMS6 1093 aa12.81□□□□□ -0.36
CLN6-217ENST00000636964 SSBP05455 408 aaKnown RBP eCLIP12.81□□□□□ -0.36
CLN6-217ENST00000636964 ZNF76P36508 570 aa12.81□□□□□ -0.36
CLN6-217ENST00000636964 PMS1P54277 932 aaKnown RBP12.81□□□□□ -0.36
CLN6-217ENST00000636964 PAK1Q13153 545 aa12.81□□□□□ -0.36
CLN6-217ENST00000636964 LRCH2Q5VUJ6 765 aa12.81□□□□□ -0.36
CLN6-217ENST00000636964 PPP4R3CPQ6ZMV5 832 aa12.81□□□□□ -0.36
CLN6-217ENST00000636964 SV2BQ7L1I2 683 aa12.81□□□□□ -0.36
CLN6-217ENST00000636964 MYMKA6NI61 221 aa12.8□□□□□ -0.36
CLN6-217ENST00000636964 H3BQF6 201 aa12.8□□□□□ -0.36
CLN6-217ENST00000636964 TEX33O43247 280 aa12.8□□□□□ -0.36
CLN6-217ENST00000636964 CCT6AP40227 531 aaKnown RBP12.8□□□□□ -0.36
CLN6-217ENST00000636964 TSHZ1Q6ZSZ6 1077 aa12.8□□□□□ -0.36
CLN6-217ENST00000636964 SRLQ86TD4 932 aa12.8□□□□□ -0.36
CLN6-217ENST00000636964 LDHDQ86WU2 507 aa12.8□□□□□ -0.36
CLN6-217ENST00000636964 LARP4BQ92615 738 aaKnown RBP12.8□□□□□ -0.36
CLN6-217ENST00000636964 RANBP17Q9H2T7 1088 aaKnown RBP12.8□□□□□ -0.36
CLN6-217ENST00000636964 STK4Q13043 487 aa12.8□□□□□ -0.36
CLN6-217ENST00000636964 MTMR2Q13614 643 aa12.8□□□□□ -0.36
CLN6-217ENST00000636964 FOXR1Q6PIV2 292 aa12.8□□□□□ -0.36
CLN6-217ENST00000636964 TMCO3Q6UWJ1 677 aa12.8□□□□□ -0.36
CLN6-217ENST00000636964 VSTM4Q8IW00 320 aa12.8□□□□□ -0.36
CLN6-217ENST00000636964 TANGO6Q9C0B7 1094 aa12.8□□□□□ -0.36
CLN6-217ENST00000636964 FHDC1Q9C0D6 1143 aaPredicted RBP12.8□□□□□ -0.36
CLN6-217ENST00000636964 CUEDC2Q9H467 287 aa12.8□□□□□ -0.36
CLN6-217ENST00000636964 IMPACTQ9P2X3 320 aa12.8□□□□□ -0.36
CLN6-217ENST00000636964 IDEP14735 1019 aa12.8□□□□□ -0.36
CLN6-217ENST00000636964 CASQ1P31415 396 aa12.8□□□□□ -0.36
CLN6-217ENST00000636964 SPP2Q13103 211 aa12.8□□□□□ -0.36
CLN6-217ENST00000636964 CRYGNQ8WXF5 182 aa12.8□□□□□ -0.36
CLN6-217ENST00000636964 KCNMB3Q9NPA1 279 aa12.8□□□□□ -0.36
CLN6-217ENST00000636964 FEM1BQ9UK73 627 aa12.8□□□□□ -0.36
CLN6-217ENST00000636964 KIAA1024Q9UPX6 916 aa12.8□□□□□ -0.36
CLN6-217ENST00000636964 E9PMD0 336 aa12.79□□□□□ -0.36
CLN6-217ENST00000636964 RHOBTB3O94955 611 aa12.79□□□□□ -0.36
CLN6-217ENST00000636964 FOSP01100 380 aaPredicted RBP12.79□□□□□ -0.36
CLN6-217ENST00000636964 SFPQP23246 707 aaKnown RBP eCLIP12.79□□□□□ -0.36
CLN6-217ENST00000636964 SREBF1P36956 1147 aa12.79□□□□□ -0.36
CLN6-217ENST00000636964 GSDMDP57764 484 aa12.79□□□□□ -0.36
CLN6-217ENST00000636964 ICE2Q659A1 982 aa12.79□□□□□ -0.36
CLN6-217ENST00000636964 CC2D1AQ6P1N0 951 aaPredicted RBP12.79□□□□□ -0.36
CLN6-217ENST00000636964 ADSSL1Q8N142 457 aa12.79□□□□□ -0.36
CLN6-217ENST00000636964 FAM212AQ96EL1 285 aa12.79□□□□□ -0.36
CLN6-217ENST00000636964 C7orf25Q9BPX7 421 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms