RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 NCALDP61601 193 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 ZSCAN23Q3MJ62 389 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 ZNF274Q96GC6 653 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-212ENST00000636194 BCL2L14Q9BZR8 327 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 DOLKQ9UPQ8 538 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 STON1Q9Y6Q2 735 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 PSMD12O00232 456 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-212ENST00000636194 DYNC1LI2O43237 492 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-212ENST00000636194 GAS7O60861 476 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 COPB1P53618 953 aaKnown RBP6.48□□□□□ -1.37
SCN1A-212ENST00000636194 MRPS35P82673 323 aaKnown RBP6.48□□□□□ -1.37
SCN1A-212ENST00000636194 HPCAP84074 193 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 PPP2R5BQ15173 497 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 GPATCH4Q5T3I0 446 aaKnown RBP6.48□□□□□ -1.37
SCN1A-212ENST00000636194 LRRC49Q8IUZ0 686 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 SLFN12Q8IYM2 578 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 TRIM58Q8NG06 486 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 NEUROD4Q9HD90 331 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 DDX56Q9NY93 547 aaKnown RBP6.48□□□□□ -1.37
SCN1A-212ENST00000636194 CABP1Q9NZU7 370 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 IBTKQ9P2D0 1353 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-212ENST00000636194 C16orf96A6NNT2 1141 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 MAP3K13O43283 966 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 DYRK3O43781 588 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 DDAH1O94760 285 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 KRT16P08779 473 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 CDH2P19022 906 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-212ENST00000636194 VCPP55072 806 aaKnown RBP6.47□□□□□ -1.37
SCN1A-212ENST00000636194 STX17P56962 302 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 SNCBQ16143 134 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 TAF1BQ53T94 588 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-212ENST00000636194 EAPPQ56P03 285 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-212ENST00000636194 UNC45BQ8IWX7 931 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 SH3KBP1Q96B97 665 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 SH3GL3Q99963 347 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 TUBGCP2Q9BSJ2 902 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 ERAP1Q9NZ08 941 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 PKD2L1Q9P0L9 805 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 RIPOR2Q9Y4F9 1068 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 MRFAP1Q9Y605 127 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 NBPF26B4DH59 902 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 ALDH1A2O94788 518 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 ZSCAN22P10073 491 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-212ENST00000636194 SFSWAPQ12872 951 aaKnown RBP6.47□□□□□ -1.37
SCN1A-212ENST00000636194 TRAF7Q6Q0C0 670 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 ARMCX2Q7L311 632 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 WDR60Q8WVS4 1066 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 TUBGCP3Q96CW5 907 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 TRIM31Q9BZY9 425 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 DHX36Q9H2U1 1008 aaKnown RBP6.47□□□□□ -1.37
SCN1A-212ENST00000636194 ZNF556Q9HAH1 456 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 SMARCAL1Q9NZC9 954 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 KLHL18O94889 574 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 BASP1P80723 227 aaKnown RBP6.47□□□□□ -1.37
SCN1A-212ENST00000636194 UBE3AQ05086 875 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 TBL3Q12788 808 aaKnown RBP6.47□□□□□ -1.37
SCN1A-212ENST00000636194 SLC25A24Q6NUK1 477 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 FAM96AQ9H5X1 160 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 UBAP1Q9NZ09 502 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 OGFRQ9NZT2 677 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 UVRAGQ9P2Y5 699 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 STRIP2Q9ULQ0 834 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 TTC3P53804 2025 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 ATXN3P54252 364 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-212ENST00000636194 C6orf118Q5T5N4 469 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 FBXW10Q5XX13 1052 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 ARHGEF18Q6ZSZ5 1173 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 PCGF5Q86SE9 256 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 RPAINQ86UA6 219 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 CAMK1DQ8IU85 385 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 IGSF22Q8N9C0 903 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 RNASE11Q8TAA1 199 aaKnown RBP6.47□□□□□ -1.37
SCN1A-212ENST00000636194 HSPH1Q92598 858 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 TSEN34Q9BSV6 310 aaKnown RBP6.47□□□□□ -1.37
SCN1A-212ENST00000636194 CDCA7Q9BWT1 371 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-212ENST00000636194 PPARGC1AQ9UBK2 798 aaKnown RBP6.47□□□□□ -1.37
SCN1A-212ENST00000636194 ITSN2Q9NZM3 1697 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 AARSP49588 968 aaKnown RBP eCLIP6.47□□□□□ -1.37
SCN1A-212ENST00000636194 POLGP54098 1239 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-212ENST00000636194 SEPT2Q15019 361 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 NBPF9Q3BBW0 867 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 KRT39Q6A163 491 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 RTL3Q8N8U3 475 aaKnown RBP6.47□□□□□ -1.37
SCN1A-212ENST00000636194 WARS2Q9UGM6 360 aaKnown RBP6.47□□□□□ -1.37
SCN1A-212ENST00000636194 SAP30BPQ9UHR5 308 aaKnown RBP6.47□□□□□ -1.37
SCN1A-212ENST00000636194 MAP3K2Q9Y2U5 619 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 MYH3P11055 1940 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 VWA3AA6NCI4 1184 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 SGK1O00141 431 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 RASSF9O75901 435 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 EIF2S3P41091 472 aaKnown RBP6.47□□□□□ -1.37
SCN1A-212ENST00000636194 ABRQ12979 859 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 ARMCX5Q6P1M9 558 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 ERICH1Q86X53 443 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 KRT78Q8N1N4 520 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 CSGALNACT2Q8N6G5 542 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 ARL8AQ96BM9 186 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 MRGBPQ9NV56 204 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 LCMT1Q9UIC8 334 aa6.47□□□□□ -1.37
SCN1A-212ENST00000636194 AK2P54819 239 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms