RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 MRPL38Q96DV4 380 aaKnown RBP7.33□□□□□ -1.24
CUX1-220ENST00000607092 NECAB3Q96P71 396 aaPredicted RBP7.33□□□□□ -1.24
CUX1-220ENST00000607092 AMNQ9BXJ7 453 aa7.33□□□□□ -1.24
CUX1-220ENST00000607092 CNNM2Q9H8M5 875 aa7.33□□□□□ -1.24
CUX1-220ENST00000607092 ZFHX2Q9C0A1 2572 aaPredicted RBP7.32□□□□□ -1.24
CUX1-220ENST00000607092 LINC01553A4QN01 128 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 RSPH10B2B2RC85 870 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 RFXAPO00287 272 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 LPXNO60711 386 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 STAM2O75886 525 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 RB1P06400 928 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 NR3C2P08235 984 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 PARP1P09874 1014 aaKnown RBP7.32□□□□□ -1.24
CUX1-220ENST00000607092 RSPH10BP0C881 870 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 HOXD8P13378 290 aaPredicted RBP7.32□□□□□ -1.24
CUX1-220ENST00000607092 KCNA5P22460 613 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 PSEN1P49768 467 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 GHRHRQ02643 423 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 MFSD10Q14728 455 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 ANKRD45Q5TZF3 282 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 VPS53Q5VIR6 699 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 CHST3Q7LGC8 479 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 FAM178BQ8IXR5 827 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 GDPD5Q8WTR4 605 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 ANKS1AQ92625 1134 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 KAT2BQ92831 832 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 PURBQ96QR8 312 aaKnown RBP7.32□□□□□ -1.24
CUX1-220ENST00000607092 YME1L1Q96TA2 773 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 UBAC1Q9BSL1 405 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 USP26Q9BXU7 913 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 KRT23Q9C075 422 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 LMAN2LQ9H0V9 348 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 EPHX3Q9H6B9 360 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 SUGCTQ9HAC7 445 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 HDAC6Q9UBN7 1215 aa7.32□□□□□ -1.24
CUX1-220ENST00000607092 DDX41Q9UJV9 622 aaKnown RBP7.32□□□□□ -1.24
CUX1-220ENST00000607092 ZNF215Q9UL58 517 aaPredicted RBP7.32□□□□□ -1.24
CUX1-220ENST00000607092 ZDBF2Q9HCK1 2354 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 FSD2A1L4K1 749 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 C17orf102A2RUQ5 167 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 EPOPA6NHQ4 379 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 HAS3O00219 553 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 NOP56O00567 594 aaKnown RBP7.31□□□□□ -1.24
CUX1-220ENST00000607092 FOXP2O15409 715 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 DCXO43602 365 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 NBNO60934 754 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 ARIH2O95376 493 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 CFBP00751 764 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 PTGS1P23219 599 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 CCND2P30279 289 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 PDE1AP54750 535 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 HTRA4P83105 476 aaPredicted RBP7.31□□□□□ -1.24
CUX1-220ENST00000607092 NEDD9Q14511 834 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 IMMTQ16891 758 aaKnown RBP7.31□□□□□ -1.24
CUX1-220ENST00000607092 LY6KQ17RY6 165 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 C20orf194Q5TEA3 1177 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 PTCRAQ6ISU1 281 aaPredicted RBP7.31□□□□□ -1.24
CUX1-220ENST00000607092 XRRA1Q6P2D8 792 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 RSPH3Q86UC2 560 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 SERINC5Q86VE9 423 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 ADGRF4Q8IZF3 695 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 MYOCDQ8IZQ8 938 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 GIMAP8Q8ND71 665 aaPredicted RBP7.31□□□□□ -1.24
CUX1-220ENST00000607092 SP7Q8TDD2 431 aaPredicted RBP7.31□□□□□ -1.24
CUX1-220ENST00000607092 KCNV2Q8TDN2 545 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 COPS5Q92905 334 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 TNPO1Q92973 898 aaKnown RBP7.31□□□□□ -1.24
CUX1-220ENST00000607092 PABPC5Q96DU9 382 aaKnown RBP7.31□□□□□ -1.24
CUX1-220ENST00000607092 MFSD14AQ96MC6 490 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 SPATA33Q96N06 139 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 TAAR1Q96RJ0 339 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 ZSCAN10Q96SZ4 725 aaPredicted RBP7.31□□□□□ -1.24
CUX1-220ENST00000607092 PRRX2Q99811 253 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 ALG1Q9BT22 464 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 MFRPQ9BY79 579 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 MLXIPQ9HAP2 919 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 PXMP2Q9NR77 195 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 RAPGEFL1Q9UHV5 662 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 MTUS1Q9ULD2 1270 aa7.31□□□□□ -1.24
CUX1-220ENST00000607092 DDX49Q9Y6V7 483 aaKnown RBP7.31□□□□□ -1.24
CUX1-220ENST00000607092 TCF20Q9UGU0 1960 aaKnown RBP7.31□□□□□ -1.24
CUX1-220ENST00000607092 SALL3Q9BXA9 1300 aa7.3□□□□□ -1.24
CUX1-220ENST00000607092 SPTBN4Q9H254 2564 aa7.3□□□□□ -1.24
CUX1-220ENST00000607092 LCHNA4D1U4 455 aa7.3□□□□□ -1.24
CUX1-220ENST00000607092 GRXCR2A6NFK2 248 aa7.3□□□□□ -1.24
CUX1-220ENST00000607092 TRIM6-TRIM34B2RNG4 842 aa7.3□□□□□ -1.24
CUX1-220ENST00000607092 H3BNC9 293 aa7.3□□□□□ -1.24
CUX1-220ENST00000607092 GGPS1O95749 300 aa7.3□□□□□ -1.24
CUX1-220ENST00000607092 EIF2AK2P19525 551 aaKnown RBP7.3□□□□□ -1.24
CUX1-220ENST00000607092 THPOP40225 353 aa7.3□□□□□ -1.24
CUX1-220ENST00000607092 HSD17B4P51659 736 aa7.3□□□□□ -1.24
CUX1-220ENST00000607092 HAND2P61296 217 aa7.3□□□□□ -1.24
CUX1-220ENST00000607092 DEFB103AP81534 67 aa7.3□□□□□ -1.24
CUX1-220ENST00000607092 TRDNQ13061 729 aa7.3□□□□□ -1.24
CUX1-220ENST00000607092 GPM6BQ13491 265 aa7.3□□□□□ -1.24
CUX1-220ENST00000607092 HDAC1Q13547 482 aaPredicted RBP7.3□□□□□ -1.24
CUX1-220ENST00000607092 SART3Q15020 963 aaKnown RBP7.3□□□□□ -1.24
CUX1-220ENST00000607092 TRIM71Q2Q1W2 868 aaKnown RBP7.3□□□□□ -1.24
CUX1-220ENST00000607092 QRICH1Q2TAL8 776 aa7.3□□□□□ -1.24
CUX1-220ENST00000607092 EPC2Q52LR7 807 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms