RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 ATP2C1P98194 919 aaPredicted RBP16.26■□□□□ 0.19
UPF1-211ENST00000600868 CEBPZQ03701 1054 aaKnown RBP16.26■□□□□ 0.19
UPF1-211ENST00000600868 PTGDRQ13258 359 aa16.26■□□□□ 0.19
UPF1-211ENST00000600868 SLC39A14Q15043 492 aa16.26■□□□□ 0.19
UPF1-211ENST00000600868 CALCRLQ16602 461 aa16.26■□□□□ 0.19
UPF1-211ENST00000600868 MFSD14CQ5VZR4 134 aa16.26■□□□□ 0.19
UPF1-211ENST00000600868 KCNV1Q6PIU1 500 aa16.26■□□□□ 0.19
UPF1-211ENST00000600868 SEPT14Q6ZU15 432 aa16.26■□□□□ 0.19
UPF1-211ENST00000600868 POTEDQ86YR6 584 aa16.26■□□□□ 0.19
UPF1-211ENST00000600868 LINC00301Q8NCQ3 95 aa16.26■□□□□ 0.19
UPF1-211ENST00000600868 ETNPPLQ8TBG4 499 aa16.26■□□□□ 0.19
UPF1-211ENST00000600868 RAET1EQ8TD07 263 aa16.26■□□□□ 0.19
UPF1-211ENST00000600868 TRIB2Q92519 343 aa16.26■□□□□ 0.19
UPF1-211ENST00000600868 CHAMP1Q96JM3 812 aa16.26■□□□□ 0.19
UPF1-211ENST00000600868 MTMR9Q96QG7 549 aa16.26■□□□□ 0.19
UPF1-211ENST00000600868 SCAND2PQ9GZW5 306 aaPredicted RBP16.26■□□□□ 0.19
UPF1-211ENST00000600868 TMEM60Q9H2L4 133 aa16.26■□□□□ 0.19
UPF1-211ENST00000600868 KCNMB3Q9NPA1 279 aa16.26■□□□□ 0.19
UPF1-211ENST00000600868 KCNH7Q9NS40 1196 aa16.26■□□□□ 0.19
UPF1-211ENST00000600868 RCOR1Q9UKL0 485 aa16.26■□□□□ 0.19
UPF1-211ENST00000600868 CNPY2Q9Y2B0 182 aa16.26■□□□□ 0.19
UPF1-211ENST00000600868 RBM47A0AV96 593 aaKnown RBP16.25■□□□□ 0.19
UPF1-211ENST00000600868 MSH4O15457 936 aa16.25■□□□□ 0.19
UPF1-211ENST00000600868 ADCY3O60266 1144 aa16.25■□□□□ 0.19
UPF1-211ENST00000600868 BAG4O95429 457 aaKnown RBP16.25■□□□□ 0.19
UPF1-211ENST00000600868 OR52Z1P0C646 297 aa16.25■□□□□ 0.19
UPF1-211ENST00000600868 NCLP19338 710 aaKnown RBP16.25■□□□□ 0.19
UPF1-211ENST00000600868 CYP2C19P33261 490 aa16.25■□□□□ 0.19
UPF1-211ENST00000600868 PRPHP41219 470 aa16.25■□□□□ 0.19
UPF1-211ENST00000600868 LBX1P52954 281 aa16.25■□□□□ 0.19
UPF1-211ENST00000600868 SEMA3FQ13275 785 aa16.25■□□□□ 0.19
UPF1-211ENST00000600868 ACVR2BQ13705 512 aa16.25■□□□□ 0.19
UPF1-211ENST00000600868 STK38Q15208 465 aa16.25■□□□□ 0.19
UPF1-211ENST00000600868 ARL6IP4Q66PJ3 421 aaKnown RBP16.25■□□□□ 0.19
UPF1-211ENST00000600868 TAPT1Q6NXT6 567 aa16.25■□□□□ 0.19
UPF1-211ENST00000600868 EEPD1Q7L9B9 569 aa16.25■□□□□ 0.19
UPF1-211ENST00000600868 FBXO16Q8IX29 292 aaPredicted RBP16.25■□□□□ 0.19
UPF1-211ENST00000600868 SLFN12Q8IYM2 578 aa16.25■□□□□ 0.19
UPF1-211ENST00000600868 FAM20AQ96MK3 541 aa16.25■□□□□ 0.19
UPF1-211ENST00000600868 AGO4Q9HCK5 861 aaKnown RBP16.25■□□□□ 0.19
UPF1-211ENST00000600868 TCHHQ07283 1943 aa16.25■□□□□ 0.19
UPF1-211ENST00000600868 SPTLC2O15270 562 aa16.24■□□□□ 0.19
UPF1-211ENST00000600868 SLAIN1Q8ND83 568 aa16.24■□□□□ 0.19
UPF1-211ENST00000600868 KCNG4Q8TDN1 519 aa16.24■□□□□ 0.19
UPF1-211ENST00000600868 SCFD2Q8WU76 684 aa16.24■□□□□ 0.19
UPF1-211ENST00000600868 LEO1Q8WVC0 666 aaPredicted RBP16.24■□□□□ 0.19
UPF1-211ENST00000600868 HAS1Q92839 578 aa16.24■□□□□ 0.19
UPF1-211ENST00000600868 SLC5A5Q92911 643 aa16.24■□□□□ 0.19
UPF1-211ENST00000600868 SENP7Q9BQF6 1050 aa16.24■□□□□ 0.19
UPF1-211ENST00000600868 ZNF577Q9BSK1 485 aa16.24■□□□□ 0.19
UPF1-211ENST00000600868 PTPN22Q9Y2R2 807 aa16.24■□□□□ 0.19
UPF1-211ENST00000600868 MRVI1Q9Y6F6 885 aa16.24■□□□□ 0.19
UPF1-211ENST00000600868 IPO5O00410 1097 aaKnown RBP16.23■□□□□ 0.19
UPF1-211ENST00000600868 PPP6R2O75170 966 aa16.23■□□□□ 0.19
UPF1-211ENST00000600868 HMGCRP04035 888 aa16.23■□□□□ 0.19
UPF1-211ENST00000600868 ZNF865P0CJ78 1059 aaPredicted RBP16.23■□□□□ 0.19
UPF1-211ENST00000600868 TTLL4Q14679 1199 aa16.23■□□□□ 0.19
UPF1-211ENST00000600868 IQSEC1Q6DN90 963 aa16.23■□□□□ 0.19
UPF1-211ENST00000600868 CCDC62Q6P9F0 684 aa16.23■□□□□ 0.19
UPF1-211ENST00000600868 CTU1Q7Z7A3 348 aaKnown RBP16.23■□□□□ 0.19
UPF1-211ENST00000600868 SPATA32Q96LK8 384 aa16.23■□□□□ 0.19
UPF1-211ENST00000600868 RIT2Q99578 217 aa16.23■□□□□ 0.19
UPF1-211ENST00000600868 DDX41Q9UJV9 622 aaKnown RBP16.23■□□□□ 0.19
UPF1-211ENST00000600868 PTCH2Q9Y6C5 1203 aa16.23■□□□□ 0.19
UPF1-211ENST00000600868 MARCH6O60337 910 aa16.22■□□□□ 0.19
UPF1-211ENST00000600868 ATP9AO75110 1047 aa16.22■□□□□ 0.19
UPF1-211ENST00000600868 PSMD10O75832 226 aa16.22■□□□□ 0.19
UPF1-211ENST00000600868 CYBAP13498 195 aa16.22■□□□□ 0.19
UPF1-211ENST00000600868 ELNP15502 786 aa16.22■□□□□ 0.19
UPF1-211ENST00000600868 KCNA2P16389 499 aa16.22■□□□□ 0.19
UPF1-211ENST00000600868 PRAMEF19Q5SWL8 479 aa16.22■□□□□ 0.19
UPF1-211ENST00000600868 GIMAP8Q8ND71 665 aaPredicted RBP16.22■□□□□ 0.19
UPF1-211ENST00000600868 FERMT2Q96AC1 680 aa16.22■□□□□ 0.19
UPF1-211ENST00000600868 GBP4Q96PP9 640 aa16.22■□□□□ 0.19
UPF1-211ENST00000600868 PDGFCQ9NRA1 345 aa16.22■□□□□ 0.19
UPF1-211ENST00000600868 TBC1D22BQ9NU19 505 aa16.22■□□□□ 0.19
UPF1-211ENST00000600868 ZHX1Q9UKY1 873 aaPredicted RBP16.22■□□□□ 0.19
UPF1-211ENST00000600868 SRPRBQ9Y5M8 271 aaKnown RBP16.22■□□□□ 0.19
UPF1-211ENST00000600868 NFASCO94856 1347 aa16.21■□□□□ 0.19
UPF1-211ENST00000600868 ELP1O95163 1332 aa16.21■□□□□ 0.19
UPF1-211ENST00000600868 DHX15O43143 795 aaKnown RBP16.21■□□□□ 0.19
UPF1-211ENST00000600868 ARIH2O95376 493 aa16.21■□□□□ 0.19
UPF1-211ENST00000600868 TXNP10599 105 aaKnown RBP16.21■□□□□ 0.19
UPF1-211ENST00000600868 MARCKSP29966 332 aaPredicted RBP16.21■□□□□ 0.19
UPF1-211ENST00000600868 GRK4P32298 578 aa16.21■□□□□ 0.19
UPF1-211ENST00000600868 TXKP42681 527 aa16.21■□□□□ 0.19
UPF1-211ENST00000600868 SP2Q02086 613 aa16.21■□□□□ 0.19
UPF1-211ENST00000600868 CACNB2Q08289 660 aaPredicted RBP16.21■□□□□ 0.19
UPF1-211ENST00000600868 ITGB3BPQ13352 177 aaPredicted RBP16.21■□□□□ 0.19
UPF1-211ENST00000600868 NEDD9Q14511 834 aa16.21■□□□□ 0.19
UPF1-211ENST00000600868 CSPP1Q1MSJ5 1256 aa16.21■□□□□ 0.19
UPF1-211ENST00000600868 CCDC144BQ3MJ40 725 aa16.21■□□□□ 0.19
UPF1-211ENST00000600868 MAP3K21Q5TCX8 1036 aa16.21■□□□□ 0.19
UPF1-211ENST00000600868 LRCH2Q5VUJ6 765 aa16.21■□□□□ 0.19
UPF1-211ENST00000600868 DTHD1Q6ZMT9 781 aa16.21■□□□□ 0.19
UPF1-211ENST00000600868 TTC12Q9H892 705 aaPredicted RBP16.21■□□□□ 0.19
UPF1-211ENST00000600868 FBXO2Q9UK22 296 aaPredicted RBP16.21■□□□□ 0.19
UPF1-211ENST00000600868 PCDHA12Q9UN75 941 aa16.21■□□□□ 0.19
UPF1-211ENST00000600868 NKRFO15226 690 aaKnown RBP eCLIP16.2■□□□□ 0.18
UPF1-211ENST00000600868 GAS7O60861 476 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms