RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 CHMP4BP1P59074 171 aa18.22■□□□□ 0.51
VRK3-221ENST00000600284 SP2Q02086 613 aa18.22■□□□□ 0.51
VRK3-221ENST00000600284 RBL2Q08999 1139 aa18.22■□□□□ 0.51
VRK3-221ENST00000600284 COL9A3Q14050 684 aaPredicted RBP18.22■□□□□ 0.51
VRK3-221ENST00000600284 GRIN2CQ14957 1233 aa18.22■□□□□ 0.51
VRK3-221ENST00000600284 HSDL1Q3SXM5 330 aa18.22■□□□□ 0.51
VRK3-221ENST00000600284 GDF6Q6KF10 455 aaPredicted RBP18.22■□□□□ 0.51
VRK3-221ENST00000600284 SYNE3Q6ZMZ3 975 aa18.22■□□□□ 0.51
VRK3-221ENST00000600284 AFAP1L1Q8TED9 768 aa18.22■□□□□ 0.51
VRK3-221ENST00000600284 MLXIPQ9HAP2 919 aa18.22■□□□□ 0.51
VRK3-221ENST00000600284 SPATA31C2B4DYI2 1134 aa18.21■□□□□ 0.51
VRK3-221ENST00000600284 MEIS2O14770 477 aa18.21■□□□□ 0.51
VRK3-221ENST00000600284 FOSL2P15408 326 aa18.21■□□□□ 0.51
VRK3-221ENST00000600284 PBX2P40425 430 aa18.21■□□□□ 0.51
VRK3-221ENST00000600284 MRPS9P82933 396 aaKnown RBP18.21■□□□□ 0.51
VRK3-221ENST00000600284 EXOSC10Q01780 885 aaKnown RBP18.21■□□□□ 0.51
VRK3-221ENST00000600284 NEDD9Q14511 834 aa18.21■□□□□ 0.51
VRK3-221ENST00000600284 KRT32Q14532 448 aa18.21■□□□□ 0.51
VRK3-221ENST00000600284 MFSD10Q14728 455 aa18.21■□□□□ 0.51
VRK3-221ENST00000600284 KIAA0753Q2KHM9 967 aa18.21■□□□□ 0.51
VRK3-221ENST00000600284 PCNX4Q63HM2 1172 aa18.21■□□□□ 0.51
VRK3-221ENST00000600284 USP17L6PQ6QN14 398 aa18.21■□□□□ 0.51
VRK3-221ENST00000600284 DHX32Q7L7V1 743 aaKnown RBP18.21■□□□□ 0.51
VRK3-221ENST00000600284 DEFB128Q7Z7B8 93 aa18.21■□□□□ 0.51
VRK3-221ENST00000600284 SKAP1Q86WV1 359 aa18.21■□□□□ 0.51
VRK3-221ENST00000600284 PPP1R13LQ8WUF5 828 aa18.21■□□□□ 0.51
VRK3-221ENST00000600284 CTAGE1Q96RT6 745 aa18.21■□□□□ 0.51
VRK3-221ENST00000600284 HDAC6Q9UBN7 1215 aa18.21■□□□□ 0.51
VRK3-221ENST00000600284 FIBPO43427 364 aa18.2■□□□□ 0.5
VRK3-221ENST00000600284 RXRAP19793 462 aa18.2■□□□□ 0.5
VRK3-221ENST00000600284 TMTC3Q6ZXV5 915 aa18.2■□□□□ 0.5
VRK3-221ENST00000600284 TEX2Q8IWB9 1127 aa18.2■□□□□ 0.5
VRK3-221ENST00000600284 MAFAQ8NHW3 353 aaPredicted RBP18.2■□□□□ 0.5
VRK3-221ENST00000600284 PHOSPHO2Q8TCD6 241 aa18.2■□□□□ 0.5
VRK3-221ENST00000600284 SENP7Q9BQF6 1050 aa18.2■□□□□ 0.5
VRK3-221ENST00000600284 ALG1Q9BT22 464 aa18.2■□□□□ 0.5
VRK3-221ENST00000600284 LRRC2Q9BYS8 371 aa18.2■□□□□ 0.5
VRK3-221ENST00000600284 PSTPIP2Q9H939 334 aa18.2■□□□□ 0.5
VRK3-221ENST00000600284 RBM28Q9NW13 759 aaKnown RBP18.2■□□□□ 0.5
VRK3-221ENST00000600284 ZBBXA8MT70 800 aa18.19■□□□□ 0.5
VRK3-221ENST00000600284 HMGB1P09429 215 aaKnown RBP18.19■□□□□ 0.5
VRK3-221ENST00000600284 ZNF286BP0CG31 522 aa18.19■□□□□ 0.5
VRK3-221ENST00000600284 SELPP16109 830 aa18.19■□□□□ 0.5
VRK3-221ENST00000600284 ATP2A2P16615 1042 aaKnown RBP18.19■□□□□ 0.5
VRK3-221ENST00000600284 PTK7Q13308 1070 aa18.19■□□□□ 0.5
VRK3-221ENST00000600284 APOA5Q6Q788 366 aa18.19■□□□□ 0.5
VRK3-221ENST00000600284 METTL7BQ6UX53 244 aa18.19■□□□□ 0.5
VRK3-221ENST00000600284 NLRX1Q86UT6 975 aa18.19■□□□□ 0.5
VRK3-221ENST00000600284 CMTR1Q8N1G2 835 aaKnown RBP18.19■□□□□ 0.5
VRK3-221ENST00000600284 GPKOWQ92917 476 aaPredicted RBP eCLIP18.19■□□□□ 0.5
VRK3-221ENST00000600284 ZFP91Q96JP5 570 aaPredicted RBP18.19■□□□□ 0.5
VRK3-221ENST00000600284 C16orf70Q9BSU1 422 aa18.19■□□□□ 0.5
VRK3-221ENST00000600284 USP26Q9BXU7 913 aa18.19■□□□□ 0.5
VRK3-221ENST00000600284 SLC28A3Q9HAS3 691 aa18.19■□□□□ 0.5
VRK3-221ENST00000600284 PCDHA11Q9Y5I1 949 aa18.19■□□□□ 0.5
VRK3-221ENST00000600284 BAIAP3O94812 1187 aa18.18■□□□□ 0.5
VRK3-221ENST00000600284 MICU3Q86XE3 530 aa18.18■□□□□ 0.5
VRK3-221ENST00000600284 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.18■□□□□ 0.5
VRK3-221ENST00000600284 GIMAP8Q8ND71 665 aaPredicted RBP18.18■□□□□ 0.5
VRK3-221ENST00000600284 CCDC136Q96JN2 1154 aa18.18■□□□□ 0.5
VRK3-221ENST00000600284 FTOQ9C0B1 505 aaKnown RBP eCLIP18.18■□□□□ 0.5
VRK3-221ENST00000600284 RTEL1Q9NZ71 1219 aa18.18■□□□□ 0.5
VRK3-221ENST00000600284 MYH7BA7E2Y1 1941 aa18.17■□□□□ 0.5
VRK3-221ENST00000600284 H3BRB1 525 aa18.17■□□□□ 0.5
VRK3-221ENST00000600284 DLL1O00548 723 aa18.17■□□□□ 0.5
VRK3-221ENST00000600284 NOP56O00567 594 aaKnown RBP18.17■□□□□ 0.5
VRK3-221ENST00000600284 CKBP12277 381 aa18.17■□□□□ 0.5
VRK3-221ENST00000600284 RCAN1P53805 252 aa18.17■□□□□ 0.5
VRK3-221ENST00000600284 SEMA3FQ13275 785 aa18.17■□□□□ 0.5
VRK3-221ENST00000600284 ADCK5Q3MIX3 580 aa18.17■□□□□ 0.5
VRK3-221ENST00000600284 LRRC8DQ7L1W4 858 aa18.17■□□□□ 0.5
VRK3-221ENST00000600284 RASEFQ8IZ41 740 aa18.17■□□□□ 0.5
VRK3-221ENST00000600284 CCDC82Q8N4S0 544 aa18.17■□□□□ 0.5
VRK3-221ENST00000600284 DHX38Q92620 1227 aaKnown RBP18.17■□□□□ 0.5
VRK3-221ENST00000600284 CDHR1Q96JP9 859 aa18.17■□□□□ 0.5
VRK3-221ENST00000600284 SLC9A7Q96T83 725 aa18.17■□□□□ 0.5
VRK3-221ENST00000600284 GAS2L1Q99501 681 aaPredicted RBP18.17■□□□□ 0.5
VRK3-221ENST00000600284 TUT1Q9H6E5 874 aaKnown RBP18.17■□□□□ 0.5
VRK3-221ENST00000600284 MAFGO15525 162 aa18.16■□□□□ 0.5
VRK3-221ENST00000600284 ZBTB43O43298 467 aa18.16■□□□□ 0.5
VRK3-221ENST00000600284 SORBS3O60504 671 aa18.16■□□□□ 0.5
VRK3-221ENST00000600284 CYFIP1Q7L576 1253 aa18.16■□□□□ 0.5
VRK3-221ENST00000600284 RAB11FIP4Q86YS3 637 aa18.16■□□□□ 0.5
VRK3-221ENST00000600284 KCNB2Q92953 911 aa18.16■□□□□ 0.5
VRK3-221ENST00000600284 GPRASP2Q96D09 838 aa18.16■□□□□ 0.5
VRK3-221ENST00000600284 GPR20Q99678 358 aa18.16■□□□□ 0.5
VRK3-221ENST00000600284 NKX2-4Q9H2Z4 354 aa18.16■□□□□ 0.5
VRK3-221ENST00000600284 YBX2Q9Y2T7 364 aaKnown RBP18.16■□□□□ 0.5
VRK3-221ENST00000600284 CDH23Q9H251 3354 aa18.15■□□□□ 0.5
VRK3-221ENST00000600284 SPDYE3A6NKU9 549 aa18.15■□□□□ 0.5
VRK3-221ENST00000600284 hCG_1984214I3L0E3 225 aa18.15■□□□□ 0.5
VRK3-221ENST00000600284 CXCL10P02778 98 aa18.15■□□□□ 0.5
VRK3-221ENST00000600284 LGALS2P05162 132 aa18.15■□□□□ 0.5
VRK3-221ENST00000600284 HOXC8P31273 242 aa18.15■□□□□ 0.5
VRK3-221ENST00000600284 GPNMBQ14956 572 aa18.15■□□□□ 0.5
VRK3-221ENST00000600284 TRIM71Q2Q1W2 868 aaKnown RBP18.15■□□□□ 0.5
VRK3-221ENST00000600284 ZNF713Q8N859 430 aaPredicted RBP18.15■□□□□ 0.5
VRK3-221ENST00000600284 BCAS3Q9H6U6 928 aa18.15■□□□□ 0.5
VRK3-221ENST00000600284 EHMT1Q9H9B1 1298 aa18.15■□□□□ 0.5
VRK3-221ENST00000600284 BRPF3Q9ULD4 1205 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms