RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 SPZ1Q9BXG8 430 aa11.32□□□□□ -0.6
VRK3-216ENST00000599342 MLXIPQ9HAP2 919 aa11.32□□□□□ -0.6
VRK3-216ENST00000599342 ANO2Q9NQ90 1003 aa11.32□□□□□ -0.6
VRK3-216ENST00000599342 HDAC6Q9UBN7 1215 aa11.32□□□□□ -0.6
VRK3-216ENST00000599342 KIF28PB7ZC32 967 aa11.31□□□□□ -0.6
VRK3-216ENST00000599342 NOP56O00567 594 aaKnown RBP11.31□□□□□ -0.6
VRK3-216ENST00000599342 SLC27A2O14975 620 aa11.31□□□□□ -0.6
VRK3-216ENST00000599342 PPFIA4O75335 1185 aa11.31□□□□□ -0.6
VRK3-216ENST00000599342 BAIAP3O94812 1187 aa11.31□□□□□ -0.6
VRK3-216ENST00000599342 CALM1P0DP23 149 aa11.31□□□□□ -0.6
VRK3-216ENST00000599342 CALM2P0DP24 149 aa11.31□□□□□ -0.6
VRK3-216ENST00000599342 CALM3P0DP25 149 aa11.31□□□□□ -0.6
VRK3-216ENST00000599342 SELPP16109 830 aa11.31□□□□□ -0.6
VRK3-216ENST00000599342 KCNJ6P48051 423 aa11.31□□□□□ -0.6
VRK3-216ENST00000599342 HSDL1Q3SXM5 330 aa11.31□□□□□ -0.6
VRK3-216ENST00000599342 LRRC8DQ7L1W4 858 aa11.31□□□□□ -0.6
VRK3-216ENST00000599342 USP38Q8NB14 1042 aa11.31□□□□□ -0.6
VRK3-216ENST00000599342 PPM1EQ8WY54 764 aa11.31□□□□□ -0.6
VRK3-216ENST00000599342 ZFP91Q96JP5 570 aaPredicted RBP11.31□□□□□ -0.6
VRK3-216ENST00000599342 ESYT1Q9BSJ8 1104 aa11.31□□□□□ -0.6
VRK3-216ENST00000599342 LSG1Q9H089 658 aaKnown RBP11.31□□□□□ -0.6
VRK3-216ENST00000599342 UNC80Q8N2C7 3258 aa11.31□□□□□ -0.6
VRK3-216ENST00000599342 HAS3O00219 553 aa11.3□□□□□ -0.6
VRK3-216ENST00000599342 SH2B2O14492 632 aaPredicted RBP11.3□□□□□ -0.6
VRK3-216ENST00000599342 CKBP12277 381 aa11.3□□□□□ -0.6
VRK3-216ENST00000599342 HOXD8P13378 290 aaPredicted RBP11.3□□□□□ -0.6
VRK3-216ENST00000599342 MYOGP15173 224 aa11.3□□□□□ -0.6
VRK3-216ENST00000599342 SMARCA1P28370 1054 aa11.3□□□□□ -0.6
VRK3-216ENST00000599342 RBL2Q08999 1139 aa11.3□□□□□ -0.6
VRK3-216ENST00000599342 PTK7Q13308 1070 aa11.3□□□□□ -0.6
VRK3-216ENST00000599342 NEDD9Q14511 834 aa11.3□□□□□ -0.6
VRK3-216ENST00000599342 RNF20Q5VTR2 975 aa11.3□□□□□ -0.6
VRK3-216ENST00000599342 CREB3L3Q68CJ9 461 aa11.3□□□□□ -0.6
VRK3-216ENST00000599342 PHOSPHO2Q8TCD6 241 aa11.3□□□□□ -0.6
VRK3-216ENST00000599342 DHX38Q92620 1227 aaKnown RBP11.3□□□□□ -0.6
VRK3-216ENST00000599342 SYMPKQ92797 1274 aaKnown RBP11.3□□□□□ -0.6
VRK3-216ENST00000599342 CTAGE1Q96RT6 745 aa11.3□□□□□ -0.6
VRK3-216ENST00000599342 SLC12A7Q9Y666 1083 aa11.3□□□□□ -0.6
VRK3-216ENST00000599342 FRMPD4Q14CM0 1322 aa11.3□□□□□ -0.6
VRK3-216ENST00000599342 SCN5AQ14524 2016 aa11.3□□□□□ -0.6
VRK3-216ENST00000599342 FIBPO43427 364 aa11.29□□□□□ -0.6
VRK3-216ENST00000599342 PLEKHA8P1O95397 391 aa11.29□□□□□ -0.6
VRK3-216ENST00000599342 CA3P07451 260 aa11.29□□□□□ -0.6
VRK3-216ENST00000599342 RXRAP19793 462 aa11.29□□□□□ -0.6
VRK3-216ENST00000599342 LIFRP42702 1097 aa11.29□□□□□ -0.6
VRK3-216ENST00000599342 MRPS9P82933 396 aaKnown RBP11.29□□□□□ -0.6
VRK3-216ENST00000599342 SP2Q02086 613 aa11.29□□□□□ -0.6
VRK3-216ENST00000599342 BMP2KLQ5H9B9 411 aa11.29□□□□□ -0.6
VRK3-216ENST00000599342 CNKSR3Q6P9H4 555 aa11.29□□□□□ -0.6
VRK3-216ENST00000599342 METTL7BQ6UX53 244 aa11.29□□□□□ -0.6
VRK3-216ENST00000599342 SYNE3Q6ZMZ3 975 aa11.29□□□□□ -0.6
VRK3-216ENST00000599342 CENPQQ7L2Z9 268 aaPredicted RBP11.29□□□□□ -0.6
VRK3-216ENST00000599342 HERC6Q8IVU3 1022 aa11.29□□□□□ -0.6
VRK3-216ENST00000599342 GPKOWQ92917 476 aaPredicted RBP eCLIP11.29□□□□□ -0.6
VRK3-216ENST00000599342 INPP4AQ96PE3 977 aaPredicted RBP11.29□□□□□ -0.6
VRK3-216ENST00000599342 RTEL1Q9NZ71 1219 aa11.29□□□□□ -0.6
VRK3-216ENST00000599342 GBF1Q92538 1859 aa11.29□□□□□ -0.6
VRK3-216ENST00000599342 C17orf102A2RUQ5 167 aa11.28□□□□□ -0.6
VRK3-216ENST00000599342 H3BRB1 525 aa11.28□□□□□ -0.6
VRK3-216ENST00000599342 PIK3CDO00329 1044 aa11.28□□□□□ -0.6
VRK3-216ENST00000599342 TLL1O43897 1013 aa11.28□□□□□ -0.6
VRK3-216ENST00000599342 LGALS2P05162 132 aa11.28□□□□□ -0.6
VRK3-216ENST00000599342 ICAM3P32942 547 aa11.28□□□□□ -0.6
VRK3-216ENST00000599342 WDR5P61964 334 aaKnown RBP11.28□□□□□ -0.6
VRK3-216ENST00000599342 ADGRE1Q14246 886 aa11.28□□□□□ -0.6
VRK3-216ENST00000599342 NECTIN1Q15223 517 aa11.28□□□□□ -0.6
VRK3-216ENST00000599342 CCDC85BQ15834 202 aaPredicted RBP11.28□□□□□ -0.6
VRK3-216ENST00000599342 TJAP1Q5JTD0 557 aa11.28□□□□□ -0.6
VRK3-216ENST00000599342 PCNX4Q63HM2 1172 aa11.28□□□□□ -0.6
VRK3-216ENST00000599342 XRRA1Q6P2D8 792 aa11.28□□□□□ -0.6
VRK3-216ENST00000599342 USP17L6PQ6QN14 398 aa11.28□□□□□ -0.6
VRK3-216ENST00000599342 CYFIP1Q7L576 1253 aa11.28□□□□□ -0.6
VRK3-216ENST00000599342 NLRX1Q86UT6 975 aa11.28□□□□□ -0.6
VRK3-216ENST00000599342 MICU3Q86XE3 530 aa11.28□□□□□ -0.6
VRK3-216ENST00000599342 RAB11FIP4Q86YS3 637 aa11.28□□□□□ -0.6
VRK3-216ENST00000599342 CMTR1Q8N1G2 835 aaKnown RBP11.28□□□□□ -0.6
VRK3-216ENST00000599342 MICALL1Q8N3F8 863 aa11.28□□□□□ -0.6
VRK3-216ENST00000599342 SRBD1Q8N5C6 995 aaKnown RBP11.28□□□□□ -0.6
VRK3-216ENST00000599342 C16orf70Q9BSU1 422 aa11.28□□□□□ -0.6
VRK3-216ENST00000599342 ZBED2Q9BTP6 218 aa11.28□□□□□ -0.6
VRK3-216ENST00000599342 USP26Q9BXU7 913 aa11.28□□□□□ -0.6
VRK3-216ENST00000599342 LRRC2Q9BYS8 371 aa11.28□□□□□ -0.6
VRK3-216ENST00000599342 TSPYL2Q9H2G4 693 aaPredicted RBP11.28□□□□□ -0.6
VRK3-216ENST00000599342 TUT1Q9H6E5 874 aaKnown RBP11.28□□□□□ -0.6
VRK3-216ENST00000599342 THEGQ9P2T0 379 aa11.28□□□□□ -0.6
VRK3-216ENST00000599342 ZNF215Q9UL58 517 aaPredicted RBP11.28□□□□□ -0.6
VRK3-216ENST00000599342 ABHD14A-ACY1A0A1B0GW23 586 aa11.27□□□□□ -0.61
VRK3-216ENST00000599342 SPDYE3A6NKU9 549 aa11.27□□□□□ -0.61
VRK3-216ENST00000599342 SPATA31C2B4DYI2 1134 aa11.27□□□□□ -0.61
VRK3-216ENST00000599342 MEIS2O14770 477 aa11.27□□□□□ -0.61
VRK3-216ENST00000599342 GTPBP6O43824 516 aaPredicted RBP11.27□□□□□ -0.61
VRK3-216ENST00000599342 NBNO60934 754 aa11.27□□□□□ -0.61
VRK3-216ENST00000599342 EFCAB14O75071 495 aa11.27□□□□□ -0.61
VRK3-216ENST00000599342 CXCL10P02778 98 aa11.27□□□□□ -0.61
VRK3-216ENST00000599342 SMIM10L2AP0DMW4 78 aa11.27□□□□□ -0.61
VRK3-216ENST00000599342 SMIM10L2BP0DMW5 78 aa11.27□□□□□ -0.61
VRK3-216ENST00000599342 THPOP40225 353 aa11.27□□□□□ -0.61
VRK3-216ENST00000599342 ZNF200P98182 395 aaPredicted RBP11.27□□□□□ -0.61
VRK3-216ENST00000599342 SP4Q02446 784 aa11.27□□□□□ -0.61
VRK3-216ENST00000599342 ZNF618Q5T7W0 954 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms