RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 TRIM71Q2Q1W2 868 aaKnown RBP14.56□□□□□ -0.08
TRIM28-212ENST00000597995 MTMR8Q96EF0 704 aa14.56□□□□□ -0.08
TRIM28-212ENST00000597995 UBAC1Q9BSL1 405 aa14.56□□□□□ -0.08
TRIM28-212ENST00000597995 LAMA4Q16363 1823 aa14.56□□□□□ -0.08
TRIM28-212ENST00000597995 MYH6P13533 1939 aa14.56□□□□□ -0.08
TRIM28-212ENST00000597995 LCHNA4D1U4 455 aa14.55□□□□□ -0.08
TRIM28-212ENST00000597995 OPLAHO14841 1288 aa14.55□□□□□ -0.08
TRIM28-212ENST00000597995 DEFB103AP81534 67 aa14.55□□□□□ -0.08
TRIM28-212ENST00000597995 TRAF1Q13077 416 aa14.55□□□□□ -0.08
TRIM28-212ENST00000597995 KIAA0753Q2KHM9 967 aa14.55□□□□□ -0.08
TRIM28-212ENST00000597995 MYSM1Q5VVJ2 828 aa14.55□□□□□ -0.08
TRIM28-212ENST00000597995 TRAF7Q6Q0C0 670 aa14.55□□□□□ -0.08
TRIM28-212ENST00000597995 STOX1Q6ZVD7 989 aa14.55□□□□□ -0.08
TRIM28-212ENST00000597995 PDCD2LQ9BRP1 358 aa14.55□□□□□ -0.08
TRIM28-212ENST00000597995 ALG1Q9BT22 464 aa14.55□□□□□ -0.08
TRIM28-212ENST00000597995 PTPRSQ13332 1948 aa14.54□□□□□ -0.08
TRIM28-212ENST00000597995 KLRF2D3W0D1 207 aa14.54□□□□□ -0.08
TRIM28-212ENST00000597995 TGFB3P10600 412 aa14.54□□□□□ -0.08
TRIM28-212ENST00000597995 ERVK-21P61565 698 aa14.54□□□□□ -0.08
TRIM28-212ENST00000597995 CELF3Q5SZQ8 465 aaKnown RBP14.54□□□□□ -0.08
TRIM28-212ENST00000597995 IFIT1BQ5T764 474 aaKnown RBP14.54□□□□□ -0.08
TRIM28-212ENST00000597995 ZNF618Q5T7W0 954 aa14.54□□□□□ -0.08
TRIM28-212ENST00000597995 VSIG10LQ86VR7 867 aa14.54□□□□□ -0.08
TRIM28-212ENST00000597995 TGS1Q96RS0 853 aaKnown RBP14.54□□□□□ -0.08
TRIM28-212ENST00000597995 SUGCTQ9HAC7 445 aa14.54□□□□□ -0.08
TRIM28-212ENST00000597995 RAPGEFL1Q9UHV5 662 aa14.54□□□□□ -0.08
TRIM28-212ENST00000597995 MYH7BA7E2Y1 1941 aa14.54□□□□□ -0.08
TRIM28-212ENST00000597995 EMSYQ7Z589 1322 aa14.53□□□□□ -0.08
TRIM28-212ENST00000597995 ZBTB5O15062 677 aa14.53□□□□□ -0.08
TRIM28-212ENST00000597995 LGR5O75473 907 aa14.53□□□□□ -0.08
TRIM28-212ENST00000597995 RGS20O76081 388 aa14.53□□□□□ -0.08
TRIM28-212ENST00000597995 ZNF286BP0CG31 522 aa14.53□□□□□ -0.08
TRIM28-212ENST00000597995 CHMLP26374 656 aa14.53□□□□□ -0.08
TRIM28-212ENST00000597995 SEC23AQ15436 765 aa14.53□□□□□ -0.08
TRIM28-212ENST00000597995 TCTN1Q2MV58 587 aa14.53□□□□□ -0.08
TRIM28-212ENST00000597995 SPRED2Q7Z698 418 aa14.53□□□□□ -0.08
TRIM28-212ENST00000597995 TMCO2Q7Z6W1 182 aaPredicted RBP14.53□□□□□ -0.08
TRIM28-212ENST00000597995 STAG2Q8N3U4 1231 aa14.53□□□□□ -0.08
TRIM28-212ENST00000597995 SPATA33Q96N06 139 aa14.53□□□□□ -0.08
TRIM28-212ENST00000597995 PCDHA1Q9Y5I3 950 aa14.53□□□□□ -0.08
TRIM28-212ENST00000597995 LINC01553A4QN01 128 aa14.52□□□□□ -0.09
TRIM28-212ENST00000597995 PALM3A6NDB9 673 aaPredicted RBP14.52□□□□□ -0.09
TRIM28-212ENST00000597995 PPP1R11O60927 126 aaPredicted RBP14.52□□□□□ -0.09
TRIM28-212ENST00000597995 MYCLP12524 364 aaPredicted RBP14.52□□□□□ -0.09
TRIM28-212ENST00000597995 PLA2G5P39877 138 aa14.52□□□□□ -0.09
TRIM28-212ENST00000597995 ZNF200P98182 395 aaPredicted RBP14.52□□□□□ -0.09
TRIM28-212ENST00000597995 PTH1RQ03431 593 aa14.52□□□□□ -0.09
TRIM28-212ENST00000597995 MBTPS1Q14703 1052 aa14.52□□□□□ -0.09
TRIM28-212ENST00000597995 PGM5Q15124 567 aa14.52□□□□□ -0.09
TRIM28-212ENST00000597995 HSDL1Q3SXM5 330 aa14.52□□□□□ -0.09
TRIM28-212ENST00000597995 SERINC5Q86VE9 423 aa14.52□□□□□ -0.09
TRIM28-212ENST00000597995 GDPD5Q8WTR4 605 aa14.52□□□□□ -0.09
TRIM28-212ENST00000597995 WNT8BQ93098 351 aa14.52□□□□□ -0.09
TRIM28-212ENST00000597995 C16orf70Q9BSU1 422 aa14.52□□□□□ -0.09
TRIM28-212ENST00000597995 MAD2L2Q9UI95 211 aa14.52□□□□□ -0.09
TRIM28-212ENST00000597995 ARIH1Q9Y4X5 557 aaPredicted RBP14.52□□□□□ -0.09
TRIM28-212ENST00000597995 INSL6Q9Y581 213 aa14.52□□□□□ -0.09
TRIM28-212ENST00000597995 BRWD1Q9NSI6 2320 aa14.52□□□□□ -0.09
TRIM28-212ENST00000597995 GGPS1O95749 300 aa14.51□□□□□ -0.09
TRIM28-212ENST00000597995 MKRN4PQ13434 485 aaPredicted RBP14.51□□□□□ -0.09
TRIM28-212ENST00000597995 HIC1Q14526 733 aa14.51□□□□□ -0.09
TRIM28-212ENST00000597995 SKAP1Q86WV1 359 aa14.51□□□□□ -0.09
TRIM28-212ENST00000597995 DBF4BQ8NFT6 615 aa14.51□□□□□ -0.09
TRIM28-212ENST00000597995 EPHX3Q9H6B9 360 aa14.51□□□□□ -0.09
TRIM28-212ENST00000597995 MLXIPQ9HAP2 919 aa14.51□□□□□ -0.09
TRIM28-212ENST00000597995 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.5□□□□□ -0.09
TRIM28-212ENST00000597995 RSPH10B2B2RC85 870 aa14.5□□□□□ -0.09
TRIM28-212ENST00000597995 GCOM1H8Y6P7 765 aaPredicted RBP14.5□□□□□ -0.09
TRIM28-212ENST00000597995 AMHP03971 560 aa14.5□□□□□ -0.09
TRIM28-212ENST00000597995 RSPH10BP0C881 870 aa14.5□□□□□ -0.09
TRIM28-212ENST00000597995 POLR2MP0CAP2 368 aa14.5□□□□□ -0.09
TRIM28-212ENST00000597995 UBA1P22314 1058 aaKnown RBP14.5□□□□□ -0.09
TRIM28-212ENST00000597995 CCND2P30279 289 aa14.5□□□□□ -0.09
TRIM28-212ENST00000597995 HOXA13P31271 388 aaPredicted RBP14.5□□□□□ -0.09
TRIM28-212ENST00000597995 HOXC8P31273 242 aa14.5□□□□□ -0.09
TRIM28-212ENST00000597995 HTRA4P83105 476 aaPredicted RBP14.5□□□□□ -0.09
TRIM28-212ENST00000597995 SP2Q02086 613 aa14.5□□□□□ -0.09
TRIM28-212ENST00000597995 PLEKHG4Q58EX7 1191 aa14.5□□□□□ -0.09
TRIM28-212ENST00000597995 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.5□□□□□ -0.095e-10■□□□□ 10.1
TRIM28-212ENST00000597995 CYB5R4Q7L1T6 521 aa14.5□□□□□ -0.09
TRIM28-212ENST00000597995 FAM122AQ96E09 287 aa14.5□□□□□ -0.09
TRIM28-212ENST00000597995 RIOX1Q9H6W3 641 aa14.5□□□□□ -0.09
TRIM28-212ENST00000597995 TAF6LQ9Y6J9 622 aa14.5□□□□□ -0.09
TRIM28-212ENST00000597995 COL4A4P53420 1690 aaPredicted RBP14.49□□□□□ -0.09
TRIM28-212ENST00000597995 C17orf102A2RUQ5 167 aa14.49□□□□□ -0.09
TRIM28-212ENST00000597995 H3BRB1 525 aa14.49□□□□□ -0.09
TRIM28-212ENST00000597995 SGSM2O43147 1006 aa14.49□□□□□ -0.09
TRIM28-212ENST00000597995 CAND2O75155 1236 aa14.49□□□□□ -0.09
TRIM28-212ENST00000597995 STAM2O75886 525 aa14.49□□□□□ -0.09
TRIM28-212ENST00000597995 THPOP40225 353 aa14.49□□□□□ -0.09
TRIM28-212ENST00000597995 TRDNQ13061 729 aa14.49□□□□□ -0.09
TRIM28-212ENST00000597995 GRM4Q14833 912 aa14.49□□□□□ -0.09
TRIM28-212ENST00000597995 IL31RAQ8NI17 732 aa14.49□□□□□ -0.09
TRIM28-212ENST00000597995 SP7Q8TDD2 431 aaPredicted RBP14.49□□□□□ -0.09
TRIM28-212ENST00000597995 ATP6V0A1Q93050 837 aa14.49□□□□□ -0.09
TRIM28-212ENST00000597995 SAMD11Q96NU1 681 aa14.49□□□□□ -0.09
TRIM28-212ENST00000597995 LRFN3Q9BTN0 628 aa14.49□□□□□ -0.09
TRIM28-212ENST00000597995 TUT1Q9H6E5 874 aaKnown RBP14.49□□□□□ -0.09
TRIM28-212ENST00000597995 UBE2ZQ9H832 354 aaPredicted RBP14.49□□□□□ -0.09
TRIM28-212ENST00000597995 MTUS1Q9ULD2 1270 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms