RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 MROH2AA6NES4 1674 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 SHPRHQ149N8 1683 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 USP4Q13107 963 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 MFSD4BQ5TF39 518 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 DTHD1Q6ZMT9 781 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 ADAT2Q7Z6V5 191 aaKnown RBP13.41□□□□□ -0.26
LIG1-207ENST00000594759 KSR1Q8IVT5 923 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 CEP70Q8NHQ1 597 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 RNF41Q9H4P4 317 aaPredicted RBP13.41□□□□□ -0.26
LIG1-207ENST00000594759 ITIH6Q6UXX5 1313 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 EYA2O00167 538 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 KCNQ4P56696 695 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 HSP90AA5PQ58FG0 334 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 MAP7D3Q8IWC1 876 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 MAB21L3Q8N8X9 362 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 MIS12Q9H081 205 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 INTS13Q9NVM9 706 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 SLC4A4Q9Y6R1 1079 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 MAST3O60307 1309 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 USP42Q9H9J4 1324 aaKnown RBP13.41□□□□□ -0.26
LIG1-207ENST00000594759 AGPSO00116 658 aa13.4□□□□□ -0.26
LIG1-207ENST00000594759 CHN1P15882 459 aa13.4□□□□□ -0.26
LIG1-207ENST00000594759 ZMYM1Q5SVZ6 1142 aa13.4□□□□□ -0.26
LIG1-207ENST00000594759 BRINP3Q76B58 766 aa13.4□□□□□ -0.26
LIG1-207ENST00000594759 APPBP2Q92624 585 aa13.4□□□□□ -0.26
LIG1-207ENST00000594759 CAVIN3Q969G5 261 aa13.4□□□□□ -0.26
LIG1-207ENST00000594759 GORASP1Q9BQQ3 440 aa13.4□□□□□ -0.26
LIG1-207ENST00000594759 SRPRBQ9Y5M8 271 aaKnown RBP13.4□□□□□ -0.26
LIG1-207ENST00000594759 C6orf118Q5T5N4 469 aa13.4□□□□□ -0.26
LIG1-207ENST00000594759 GDAP1Q8TB36 358 aa13.4□□□□□ -0.26
LIG1-207ENST00000594759 EHD2Q9NZN4 543 aa13.4□□□□□ -0.26
LIG1-207ENST00000594759 PNMA2Q9UL42 364 aa13.4□□□□□ -0.26
LIG1-207ENST00000594759 LGALS16A8MUM7 142 aa13.4□□□□□ -0.26
LIG1-207ENST00000594759 PGRMC1O00264 195 aaKnown RBP13.4□□□□□ -0.26
LIG1-207ENST00000594759 APOA5Q6Q788 366 aa13.4□□□□□ -0.26
LIG1-207ENST00000594759 PDCD7Q8N8D1 485 aaKnown RBP13.4□□□□□ -0.26
LIG1-207ENST00000594759 CFAP61Q8NHU2 1237 aa13.4□□□□□ -0.26
LIG1-207ENST00000594759 ZMYND12Q9H0C1 365 aa13.4□□□□□ -0.26
LIG1-207ENST00000594759 CNNM2Q9H8M5 875 aa13.4□□□□□ -0.26
LIG1-207ENST00000594759 USP15Q9Y4E8 981 aaPredicted RBP13.4□□□□□ -0.26
LIG1-207ENST00000594759 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.39□□□□□ -0.27
LIG1-207ENST00000594759 RASGRF2O14827 1237 aa13.39□□□□□ -0.27
LIG1-207ENST00000594759 ATP5HO75947 161 aa13.39□□□□□ -0.27
LIG1-207ENST00000594759 ITGA6P23229 1130 aa13.39□□□□□ -0.27
LIG1-207ENST00000594759 PPP1R2P41236 205 aa13.39□□□□□ -0.27
LIG1-207ENST00000594759 XRCC4Q13426 336 aa13.39□□□□□ -0.27
LIG1-207ENST00000594759 CDC37Q16543 378 aaPredicted RBP13.39□□□□□ -0.27
LIG1-207ENST00000594759 SNRNP27Q8WVK2 155 aaKnown RBP13.39□□□□□ -0.27
LIG1-207ENST00000594759 MYOM1P52179 1685 aa13.39□□□□□ -0.27
LIG1-207ENST00000594759 VWDEQ8N2E2 1590 aa13.39□□□□□ -0.27
LIG1-207ENST00000594759 NVLO15381 856 aaKnown RBP13.39□□□□□ -0.27
LIG1-207ENST00000594759 ZNF18P17022 549 aa13.39□□□□□ -0.27
LIG1-207ENST00000594759 FAM182BQ5T319 152 aa13.39□□□□□ -0.27
LIG1-207ENST00000594759 AGBL2Q5U5Z8 902 aa13.39□□□□□ -0.27
LIG1-207ENST00000594759 USPL1Q5W0Q7 1092 aa13.39□□□□□ -0.27
LIG1-207ENST00000594759 NME8Q8N427 588 aa13.39□□□□□ -0.27
LIG1-207ENST00000594759 PRMT1Q99873 361 aaKnown RBP13.39□□□□□ -0.27
LIG1-207ENST00000594759 TMBIM4Q9HC24 238 aa13.39□□□□□ -0.27
LIG1-207ENST00000594759 DNM1LO00429 736 aa13.39□□□□□ -0.27
LIG1-207ENST00000594759 EXOSC10Q01780 885 aaKnown RBP13.39□□□□□ -0.27
LIG1-207ENST00000594759 ADCY1Q08828 1119 aa13.39□□□□□ -0.27
LIG1-207ENST00000594759 ASIC2Q16515 512 aa13.39□□□□□ -0.27
LIG1-207ENST00000594759 MIGA1Q8NAN2 632 aa13.39□□□□□ -0.27
LIG1-207ENST00000594759 CNOT6LQ96LI5 555 aaKnown RBP13.39□□□□□ -0.27
LIG1-207ENST00000594759 DAAM1Q9Y4D1 1078 aa13.39□□□□□ -0.27
LIG1-207ENST00000594759 DUSP10Q9Y6W6 482 aa13.39□□□□□ -0.27
LIG1-207ENST00000594759 PTPRUQ92729 1446 aa13.39□□□□□ -0.27
LIG1-207ENST00000594759 TRAPPC3O43617 180 aa13.38□□□□□ -0.27
LIG1-207ENST00000594759 RFC4P35249 363 aa13.38□□□□□ -0.27
LIG1-207ENST00000594759 COPS2P61201 443 aa13.38□□□□□ -0.27
LIG1-207ENST00000594759 BYSLQ13895 437 aaKnown RBP13.38□□□□□ -0.27
LIG1-207ENST00000594759 LRRC14Q15048 493 aa13.38□□□□□ -0.27
LIG1-207ENST00000594759 ZNF658Q5TYW1 1059 aaPredicted RBP13.38□□□□□ -0.27
LIG1-207ENST00000594759 GRAMD4Q6IC98 578 aa13.38□□□□□ -0.27
LIG1-207ENST00000594759 FOXP4Q8IVH2 680 aaPredicted RBP13.38□□□□□ -0.27
LIG1-207ENST00000594759 CAPN11Q9UMQ6 739 aa13.38□□□□□ -0.27
LIG1-207ENST00000594759 V9GY48 417 aaPredicted RBP13.38□□□□□ -0.27
LIG1-207ENST00000594759 FANCGO15287 622 aa13.38□□□□□ -0.27
LIG1-207ENST00000594759 FESP07332 822 aa13.38□□□□□ -0.27
LIG1-207ENST00000594759 OLFML2BQ68BL8 750 aa13.38□□□□□ -0.27
LIG1-207ENST00000594759 OTUD6AQ7L8S5 288 aa13.38□□□□□ -0.27
LIG1-207ENST00000594759 APBB1IPQ7Z5R6 666 aaPredicted RBP13.38□□□□□ -0.27
LIG1-207ENST00000594759 LACRTQ9GZZ8 138 aa13.38□□□□□ -0.27
LIG1-207ENST00000594759 MTUS1Q9ULD2 1270 aa13.38□□□□□ -0.27
LIG1-207ENST00000594759 MYO3AQ8NEV4 1616 aa13.38□□□□□ -0.27
LIG1-207ENST00000594759 PALMO75781 387 aa13.38□□□□□ -0.27
LIG1-207ENST00000594759 UBOX5O94941 541 aa13.38□□□□□ -0.27
LIG1-207ENST00000594759 ABL1P00519 1130 aa13.38□□□□□ -0.27
LIG1-207ENST00000594759 GSTA2P09210 222 aa13.38□□□□□ -0.27
LIG1-207ENST00000594759 RAB27AP51159 221 aa13.38□□□□□ -0.27
LIG1-207ENST00000594759 ITIH3Q06033 890 aa13.38□□□□□ -0.27
LIG1-207ENST00000594759 LRRC24Q50LG9 513 aa13.38□□□□□ -0.27
LIG1-207ENST00000594759 PIK3AP1Q6ZUJ8 805 aa13.38□□□□□ -0.27
LIG1-207ENST00000594759 ILDR1Q86SU0 546 aaPredicted RBP13.38□□□□□ -0.27
LIG1-207ENST00000594759 BICD1Q96G01 975 aa13.38□□□□□ -0.27
LIG1-207ENST00000594759 MLXIPLQ9NP71 852 aa13.38□□□□□ -0.27
LIG1-207ENST00000594759 PARP2Q9UGN5 583 aa13.38□□□□□ -0.27
LIG1-207ENST00000594759 MED23Q9ULK4 1368 aa13.38□□□□□ -0.27
LIG1-207ENST00000594759 SPDYE3A6NKU9 549 aa13.37□□□□□ -0.27
LIG1-207ENST00000594759 TRAF5O00463 557 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms