RNA–Protein interactions for RNA: ENST00000594067.5

LIG1-206, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-206ENST00000594067 NLRC4Q9NPP4 1024 aa18.25■□□□□ 0.51
LIG1-206ENST00000594067 FAM184BQ9ULE4 1060 aa18.25■□□□□ 0.51
LIG1-206ENST00000594067 IL1R1P14778 569 aa18.25■□□□□ 0.51
LIG1-206ENST00000594067 SLC7A5Q01650 507 aa18.25■□□□□ 0.51
LIG1-206ENST00000594067 KCNMA1Q12791 1236 aa18.25■□□□□ 0.51
LIG1-206ENST00000594067 PDIA5Q14554 519 aa18.25■□□□□ 0.51
LIG1-206ENST00000594067 TMEM119Q4V9L6 283 aa18.25■□□□□ 0.51
LIG1-206ENST00000594067 PDXDC1Q6P996 788 aa18.25■□□□□ 0.51
LIG1-206ENST00000594067 SPATA4Q8NEY3 305 aa18.25■□□□□ 0.51
LIG1-206ENST00000594067 ALS2CR12Q96Q35 445 aa18.25■□□□□ 0.51
LIG1-206ENST00000594067 GOLGA6CA6NDK9 693 aa18.24■□□□□ 0.51
LIG1-206ENST00000594067 GOLGA6BA6NDN3 693 aa18.24■□□□□ 0.51
LIG1-206ENST00000594067 hCG_1984214I3L0E3 225 aa18.24■□□□□ 0.51
LIG1-206ENST00000594067 SSBP05455 408 aaKnown RBP eCLIP18.24■□□□□ 0.51
LIG1-206ENST00000594067 GOLGA6DP0CG33 693 aa18.24■□□□□ 0.51
LIG1-206ENST00000594067 IRAK1P51617 712 aa18.24■□□□□ 0.51
LIG1-206ENST00000594067 RASSF7Q02833 373 aa18.24■□□□□ 0.51
LIG1-206ENST00000594067 ICE2Q659A1 982 aa18.24■□□□□ 0.51
LIG1-206ENST00000594067 PRR5LQ6MZQ0 368 aa18.24■□□□□ 0.51
LIG1-206ENST00000594067 DPP8Q6V1X1 898 aaPredicted RBP18.24■□□□□ 0.51
LIG1-206ENST00000594067 EFCAB13Q8IY85 973 aa18.24■□□□□ 0.51
LIG1-206ENST00000594067 ZNF713Q8N859 430 aaPredicted RBP18.24■□□□□ 0.51
LIG1-206ENST00000594067 GOLGA6AQ9NYA3 693 aa18.24■□□□□ 0.51
LIG1-206ENST00000594067 TBC1D7Q9P0N9 293 aa18.24■□□□□ 0.51
LIG1-206ENST00000594067 HYOU1Q9Y4L1 999 aa18.24■□□□□ 0.51
LIG1-206ENST00000594067 ABCB11O95342 1321 aa18.24■□□□□ 0.51
LIG1-206ENST00000594067 BUB1O43683 1085 aa18.24■□□□□ 0.51
LIG1-206ENST00000594067 ATP2B4P23634 1241 aa18.24■□□□□ 0.51
LIG1-206ENST00000594067 EHHADHQ08426 723 aa18.24■□□□□ 0.51
LIG1-206ENST00000594067 COASYQ13057 564 aa18.24■□□□□ 0.51
LIG1-206ENST00000594067 ASPRV1Q53RT3 343 aa18.24■□□□□ 0.51
LIG1-206ENST00000594067 TDRD12Q587J7 1177 aaKnown RBP18.24■□□□□ 0.51
LIG1-206ENST00000594067 MYOCDQ8IZQ8 938 aa18.24■□□□□ 0.51
LIG1-206ENST00000594067 MARCH6O60337 910 aa18.23■□□□□ 0.51
LIG1-206ENST00000594067 SLC1A4P43007 532 aa18.23■□□□□ 0.51
LIG1-206ENST00000594067 TTBK2Q6IQ55 1244 aa18.23■□□□□ 0.51
LIG1-206ENST00000594067 SND1Q7KZF4 910 aaKnown RBP eCLIP18.23■□□□□ 0.51
LIG1-206ENST00000594067 TMC4Q7Z404 712 aa18.23■□□□□ 0.51
LIG1-206ENST00000594067 JMJD4Q9H9V9 463 aa18.23■□□□□ 0.51
LIG1-206ENST00000594067 TRAF5O00463 557 aa18.23■□□□□ 0.51
LIG1-206ENST00000594067 PPP1R11O60927 126 aaPredicted RBP18.23■□□□□ 0.51
LIG1-206ENST00000594067 CPP00450 1065 aa18.23■□□□□ 0.51
LIG1-206ENST00000594067 NAP1L1P55209 391 aaKnown RBP18.23■□□□□ 0.51
LIG1-206ENST00000594067 CCDC40Q4G0X9 1142 aa18.23■□□□□ 0.51
LIG1-206ENST00000594067 CCDC181Q5TID7 509 aa18.23■□□□□ 0.51
LIG1-206ENST00000594067 ADGRF4Q8IZF3 695 aa18.23■□□□□ 0.51
LIG1-206ENST00000594067 HAS1Q92839 578 aa18.23■□□□□ 0.51
LIG1-206ENST00000594067 DNAJC19Q96DA6 116 aa18.23■□□□□ 0.51
LIG1-206ENST00000594067 MTMR8Q96EF0 704 aa18.23■□□□□ 0.51
LIG1-206ENST00000594067 FAM163AQ96GL9 167 aaPredicted RBP18.23■□□□□ 0.51
LIG1-206ENST00000594067 C8orf37Q96NL8 207 aa18.23■□□□□ 0.51
LIG1-206ENST00000594067 FGFBP2Q9BYJ0 223 aa18.23■□□□□ 0.51
LIG1-206ENST00000594067 RIC8AQ9NPQ8 531 aa18.23■□□□□ 0.51
LIG1-206ENST00000594067 DDX25Q9UHL0 483 aaKnown RBP18.23■□□□□ 0.51
LIG1-206ENST00000594067 DAGLAQ9Y4D2 1042 aa18.23■□□□□ 0.51
LIG1-206ENST00000594067 CDK5RAP2Q96SN8 1893 aa18.22■□□□□ 0.51
LIG1-206ENST00000594067 GAKO14976 1311 aa18.22■□□□□ 0.51
LIG1-206ENST00000594067 PRLRP16471 622 aa18.22■□□□□ 0.51
LIG1-206ENST00000594067 TCP1P17987 556 aaKnown RBP18.22■□□□□ 0.51
LIG1-206ENST00000594067 PSMD2Q13200 908 aa18.22■□□□□ 0.51
LIG1-206ENST00000594067 ASTE1Q2TB18 679 aaPredicted RBP18.22■□□□□ 0.51
LIG1-206ENST00000594067 HGSNATQ68CP4 663 aa18.22■□□□□ 0.51
LIG1-206ENST00000594067 FAM196AQ6ZSG2 479 aa18.22■□□□□ 0.51
LIG1-206ENST00000594067 LRRC27Q9C0I9 530 aa18.22■□□□□ 0.51
LIG1-206ENST00000594067 KANSL2Q9H9L4 492 aa18.22■□□□□ 0.51
LIG1-206ENST00000594067 POLLQ9UGP5 575 aa18.22■□□□□ 0.51
LIG1-206ENST00000594067 COL4A3BPQ9Y5P4 624 aa18.22■□□□□ 0.51
LIG1-206ENST00000594067 A0A087WUV0 522 aaPredicted RBP18.22■□□□□ 0.51
LIG1-206ENST00000594067 F8W031 263 aaPredicted RBP18.22■□□□□ 0.51
LIG1-206ENST00000594067 SLC16A2P36021 539 aa18.22■□□□□ 0.51
LIG1-206ENST00000594067 APBA1Q02410 837 aa18.22■□□□□ 0.51
LIG1-206ENST00000594067 ZNF572Q7Z3I7 529 aaPredicted RBP18.22■□□□□ 0.51
LIG1-206ENST00000594067 SLF2Q8IX21 1173 aa18.22■□□□□ 0.51
LIG1-206ENST00000594067 NELFCDQ8IXH7 590 aa18.22■□□□□ 0.51
LIG1-206ENST00000594067 PANK4Q9NVE7 773 aa18.22■□□□□ 0.51
LIG1-206ENST00000594067 PJA2O43164 708 aa18.21■□□□□ 0.51
LIG1-206ENST00000594067 CACNB1Q02641 598 aaPredicted RBP18.21■□□□□ 0.51
LIG1-206ENST00000594067 ITIH3Q06033 890 aa18.21■□□□□ 0.51
LIG1-206ENST00000594067 TADA2BQ86TJ2 420 aa18.21■□□□□ 0.51
LIG1-206ENST00000594067 EHD4Q9H223 541 aa18.21■□□□□ 0.51
LIG1-206ENST00000594067 PNMA6FA0A0J9YX94 578 aa18.21■□□□□ 0.51
LIG1-206ENST00000594067 SNHG28P0DPA3 235 aa18.21■□□□□ 0.51
LIG1-206ENST00000594067 FKBP3Q00688 224 aaKnown RBP18.21■□□□□ 0.51
LIG1-206ENST00000594067 PPFIA1Q13136 1202 aa18.21■□□□□ 0.51
LIG1-206ENST00000594067 FAM26FQ5R3K3 315 aa18.21■□□□□ 0.51
LIG1-206ENST00000594067 NGLY1Q96IV0 654 aa18.21■□□□□ 0.51
LIG1-206ENST00000594067 LSM14BQ9BX40 385 aaKnown RBP18.21■□□□□ 0.51
LIG1-206ENST00000594067 TLR10Q9BXR5 811 aa18.21■□□□□ 0.51
LIG1-206ENST00000594067 MYH10P35580 1976 aa18.2■□□□□ 0.5
LIG1-206ENST00000594067 E9PMD0 336 aa18.2■□□□□ 0.5
LIG1-206ENST00000594067 C6orf229H3BNL8 230 aa18.2■□□□□ 0.5
LIG1-206ENST00000594067 CCT5P48643 541 aa18.2■□□□□ 0.5
LIG1-206ENST00000594067 GTF2IP78347 998 aa18.2■□□□□ 0.5
LIG1-206ENST00000594067 ZNF543Q08ER8 600 aa18.2■□□□□ 0.5
LIG1-206ENST00000594067 ZCWPW2Q504Y3 356 aa18.2■□□□□ 0.5
LIG1-206ENST00000594067 KLHDC7AQ5VTJ3 777 aa18.2■□□□□ 0.5
LIG1-206ENST00000594067 PPP4R3AQ6IN85 833 aa18.2■□□□□ 0.5
LIG1-206ENST00000594067 MS4A14Q96JA4 679 aa18.2■□□□□ 0.5
LIG1-206ENST00000594067 SH3GL2Q99962 352 aa18.2■□□□□ 0.5
LIG1-206ENST00000594067 NPHP3-ACAD11A0A0J9YXS1 232 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms