RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 RPUSD2Q8IZ73 545 aaKnown RBP12.1□□□□□ -0.47
LIG3-212ENST00000590181 OR6J1Q8NGC5 347 aa12.1□□□□□ -0.47
LIG3-212ENST00000590181 CDHR1Q96JP9 859 aa12.1□□□□□ -0.47
LIG3-212ENST00000590181 PDCD2LQ9BRP1 358 aa12.1□□□□□ -0.47
LIG3-212ENST00000590181 KATNAL1Q9BW62 490 aa12.1□□□□□ -0.47
LIG3-212ENST00000590181 CPVLQ9H3G5 476 aa12.1□□□□□ -0.47
LIG3-212ENST00000590181 EHMT1Q9H9B1 1298 aa12.1□□□□□ -0.47
LIG3-212ENST00000590181 SCN10AQ9Y5Y9 1956 aa12.1□□□□□ -0.47
LIG3-212ENST00000590181 PRRC2BQ5JSZ5 2229 aaKnown RBP12.1□□□□□ -0.47
LIG3-212ENST00000590181 ZBBXA8MT70 800 aa12.09□□□□□ -0.47
LIG3-212ENST00000590181 OPLAHO14841 1288 aa12.09□□□□□ -0.47
LIG3-212ENST00000590181 FOSP01100 380 aaPredicted RBP12.09□□□□□ -0.47
LIG3-212ENST00000590181 FGBP02675 491 aa12.09□□□□□ -0.47
LIG3-212ENST00000590181 PFKMP08237 780 aa12.09□□□□□ -0.47
LIG3-212ENST00000590181 HSPA4P34932 840 aa12.09□□□□□ -0.47
LIG3-212ENST00000590181 RABGGTBP53611 331 aa12.09□□□□□ -0.47
LIG3-212ENST00000590181 CCL23P55773 120 aa12.09□□□□□ -0.47
LIG3-212ENST00000590181 FGD1P98174 961 aa12.09□□□□□ -0.47
LIG3-212ENST00000590181 TFF2Q03403 129 aa12.09□□□□□ -0.47
LIG3-212ENST00000590181 PPP1R18Q6NYC8 613 aa12.09□□□□□ -0.47
LIG3-212ENST00000590181 APOA5Q6Q788 366 aa12.09□□□□□ -0.47
LIG3-212ENST00000590181 CXCL17Q6UXB2 119 aa12.09□□□□□ -0.47
LIG3-212ENST00000590181 SESTD1Q86VW0 696 aa12.09□□□□□ -0.47
LIG3-212ENST00000590181 HOMER1Q86YM7 354 aa12.09□□□□□ -0.47
LIG3-212ENST00000590181 PPTC7Q8NI37 304 aa12.09□□□□□ -0.47
LIG3-212ENST00000590181 SENP7Q9BQF6 1050 aa12.09□□□□□ -0.47
LIG3-212ENST00000590181 NOC4LQ9BVI4 516 aaKnown RBP12.09□□□□□ -0.47
LIG3-212ENST00000590181 WNT8AQ9H1J5 351 aa12.09□□□□□ -0.47
LIG3-212ENST00000590181 PSTPIP2Q9H939 334 aa12.09□□□□□ -0.47
LIG3-212ENST00000590181 DDX41Q9UJV9 622 aaKnown RBP12.09□□□□□ -0.47
LIG3-212ENST00000590181 MYH7BA7E2Y1 1941 aa12.09□□□□□ -0.47
LIG3-212ENST00000590181 FRMPD4Q14CM0 1322 aa12.09□□□□□ -0.47
LIG3-212ENST00000590181 ZBTB43O43298 467 aa12.08□□□□□ -0.48
LIG3-212ENST00000590181 PPP1R11O60927 126 aaPredicted RBP12.08□□□□□ -0.48
LIG3-212ENST00000590181 ICAM3P32942 547 aa12.08□□□□□ -0.48
LIG3-212ENST00000590181 NEDD9Q14511 834 aa12.08□□□□□ -0.48
LIG3-212ENST00000590181 PGM5Q15124 567 aa12.08□□□□□ -0.48
LIG3-212ENST00000590181 SKIV2LQ15477 1246 aaKnown RBP12.08□□□□□ -0.48
LIG3-212ENST00000590181 DHX37Q8IY37 1157 aaKnown RBP12.08□□□□□ -0.48
LIG3-212ENST00000590181 FAM177A1Q8N128 213 aaPredicted RBP12.08□□□□□ -0.48
LIG3-212ENST00000590181 CCDC155Q8N6L0 562 aa12.08□□□□□ -0.48
LIG3-212ENST00000590181 SMARCC2Q8TAQ2 1214 aa12.08□□□□□ -0.48
LIG3-212ENST00000590181 CCDC12Q8WUD4 166 aaPredicted RBP12.08□□□□□ -0.48
LIG3-212ENST00000590181 TBC1D5Q92609 795 aa12.08□□□□□ -0.48
LIG3-212ENST00000590181 PURBQ96QR8 312 aaKnown RBP12.08□□□□□ -0.48
LIG3-212ENST00000590181 C1QTNF1Q9BXJ1 281 aa12.08□□□□□ -0.48
LIG3-212ENST00000590181 PCDHA11Q9Y5I1 949 aa12.08□□□□□ -0.48
LIG3-212ENST00000590181 MRVI1Q9Y6F6 885 aa12.08□□□□□ -0.48
LIG3-212ENST00000590181 TAF6LQ9Y6J9 622 aa12.08□□□□□ -0.48
LIG3-212ENST00000590181 SLC4A7Q9Y6M7 1214 aa12.08□□□□□ -0.48
LIG3-212ENST00000590181 PITPNM1O00562 1244 aa12.07□□□□□ -0.48
LIG3-212ENST00000590181 HOXD8P13378 290 aaPredicted RBP12.07□□□□□ -0.48
LIG3-212ENST00000590181 MYOGP15173 224 aa12.07□□□□□ -0.48
LIG3-212ENST00000590181 EIF2AK2P19525 551 aaKnown RBP12.07□□□□□ -0.48
LIG3-212ENST00000590181 RFC2P35250 354 aa12.07□□□□□ -0.48
LIG3-212ENST00000590181 KCNQ1P51787 676 aa12.07□□□□□ -0.48
LIG3-212ENST00000590181 BFSP2Q13515 415 aa12.07□□□□□ -0.48
LIG3-212ENST00000590181 AAK1Q2M2I8 961 aa12.07□□□□□ -0.48
LIG3-212ENST00000590181 PCNX4Q63HM2 1172 aa12.07□□□□□ -0.48
LIG3-212ENST00000590181 BLOC1S2Q6QNY1 142 aa12.07□□□□□ -0.48
LIG3-212ENST00000590181 SEPT14Q6ZU15 432 aa12.07□□□□□ -0.48
LIG3-212ENST00000590181 TMTC3Q6ZXV5 915 aa12.07□□□□□ -0.48
LIG3-212ENST00000590181 NLRX1Q86UT6 975 aa12.07□□□□□ -0.48
LIG3-212ENST00000590181 SRBD1Q8N5C6 995 aaKnown RBP12.07□□□□□ -0.48
LIG3-212ENST00000590181 TM6SF1Q9BZW5 370 aa12.07□□□□□ -0.48
LIG3-212ENST00000590181 TRPV6Q9H1D0 765 aa12.07□□□□□ -0.48
LIG3-212ENST00000590181 ALDH8A1Q9H2A2 487 aaPredicted RBP12.07□□□□□ -0.48
LIG3-212ENST00000590181 SENP2Q9HC62 589 aa12.07□□□□□ -0.48
LIG3-212ENST00000590181 COL20A1Q9P218 1284 aa12.07□□□□□ -0.48
LIG3-212ENST00000590181 SIP14410 1827 aa12.07□□□□□ -0.48
LIG3-212ENST00000590181 B4GALT4O60513 344 aa12.06□□□□□ -0.48
LIG3-212ENST00000590181 MYL3P08590 195 aa12.06□□□□□ -0.48
LIG3-212ENST00000590181 ATP2A2P16615 1042 aaKnown RBP12.06□□□□□ -0.48
LIG3-212ENST00000590181 PTGS1P23219 599 aa12.06□□□□□ -0.48
LIG3-212ENST00000590181 PSMC6P62333 389 aa12.06□□□□□ -0.48
LIG3-212ENST00000590181 ARHGAP1Q07960 439 aa12.06□□□□□ -0.48
LIG3-212ENST00000590181 CELF3Q5SZQ8 465 aaKnown RBP12.06□□□□□ -0.48
LIG3-212ENST00000590181 MYSM1Q5VVJ2 828 aa12.06□□□□□ -0.48
LIG3-212ENST00000590181 FAM43BQ6ZT52 329 aaPredicted RBP12.06□□□□□ -0.48
LIG3-212ENST00000590181 TNPO1Q92973 898 aaKnown RBP12.06□□□□□ -0.48
LIG3-212ENST00000590181 SCLYQ96I15 445 aa12.06□□□□□ -0.48
LIG3-212ENST00000590181 INPP4AQ96PE3 977 aaPredicted RBP12.06□□□□□ -0.48
LIG3-212ENST00000590181 USP26Q9BXU7 913 aa12.06□□□□□ -0.48
LIG3-212ENST00000590181 AGXT2Q9BYV1 514 aa12.06□□□□□ -0.48
LIG3-212ENST00000590181 HCN4Q9Y3Q4 1203 aa12.06□□□□□ -0.48
LIG3-212ENST00000590181 BRWD1Q9NSI6 2320 aa12.06□□□□□ -0.48
LIG3-212ENST00000590181 SPDYE3A6NKU9 549 aa12.05□□□□□ -0.48
LIG3-212ENST00000590181 SPATA31C2B4DYI2 1134 aa12.05□□□□□ -0.48
LIG3-212ENST00000590181 FIBPO43427 364 aa12.05□□□□□ -0.48
LIG3-212ENST00000590181 GTPBP6O43824 516 aaPredicted RBP12.05□□□□□ -0.48
LIG3-212ENST00000590181 CA3P07451 260 aa12.05□□□□□ -0.48
LIG3-212ENST00000590181 MYCLP12524 364 aaPredicted RBP12.05□□□□□ -0.48
LIG3-212ENST00000590181 BMP1P13497 986 aa12.05□□□□□ -0.48
LIG3-212ENST00000590181 EVCP57679 992 aa12.05□□□□□ -0.48
LIG3-212ENST00000590181 RTN1Q16799 776 aa12.05□□□□□ -0.48
LIG3-212ENST00000590181 LY6KQ17RY6 165 aa12.05□□□□□ -0.48
LIG3-212ENST00000590181 SLC35G1Q2M3R5 365 aa12.05□□□□□ -0.48
LIG3-212ENST00000590181 NBPF20Q3BBV1 942 aa12.05□□□□□ -0.48
LIG3-212ENST00000590181 MICU3Q86XE3 530 aa12.05□□□□□ -0.48
LIG3-212ENST00000590181 RASEFQ8IZ41 740 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms