RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 GMPRP36959 345 aa7.04□□□□□ -1.28
SMAD4-208ENST00000589706 CDKN1CP49918 316 aaPredicted RBP7.04□□□□□ -1.28
SMAD4-208ENST00000589706 CNNM4Q6P4Q7 775 aa7.04□□□□□ -1.28
SMAD4-208ENST00000589706 RNF180Q86T96 592 aa7.04□□□□□ -1.28
SMAD4-208ENST00000589706 LRRTM3Q86VH5 581 aa7.04□□□□□ -1.28
SMAD4-208ENST00000589706 DDX42Q86XP3 938 aaKnown RBP eCLIP7.04□□□□□ -1.28
SMAD4-208ENST00000589706 TRIM59Q8IWR1 403 aa7.04□□□□□ -1.28
SMAD4-208ENST00000589706 ARHGEF39Q8N4T4 335 aa7.04□□□□□ -1.28
SMAD4-208ENST00000589706 CRACR2BQ8N4Y2 399 aaPredicted RBP7.04□□□□□ -1.28
SMAD4-208ENST00000589706 UBR7Q8N806 425 aa7.04□□□□□ -1.28
SMAD4-208ENST00000589706 FLAD1Q8NFF5 587 aa7.04□□□□□ -1.28
SMAD4-208ENST00000589706 ADCY4Q8NFM4 1077 aa7.04□□□□□ -1.28
SMAD4-208ENST00000589706 RIN3Q8TB24 985 aa7.04□□□□□ -1.28
SMAD4-208ENST00000589706 IER2Q9BTL4 223 aa7.04□□□□□ -1.28
SMAD4-208ENST00000589706 CCDC94Q9BW85 323 aaPredicted RBP7.04□□□□□ -1.28
SMAD4-208ENST00000589706 TARS2Q9BW92 718 aaKnown RBP7.04□□□□□ -1.28
SMAD4-208ENST00000589706 TSPYL1Q9H0U9 437 aa7.04□□□□□ -1.28
SMAD4-208ENST00000589706 ACSS3Q9H6R3 686 aa7.04□□□□□ -1.28
SMAD4-208ENST00000589706 MAGEC2Q9UBF1 373 aaPredicted RBP7.04□□□□□ -1.28
SMAD4-208ENST00000589706 FBXL21Q9UKT6 434 aa7.04□□□□□ -1.28
SMAD4-208ENST00000589706 G3BP2Q9UN86 482 aaKnown RBP7.04□□□□□ -1.28
SMAD4-208ENST00000589706 MAPRE3Q9UPY8 281 aa7.04□□□□□ -1.28
SMAD4-208ENST00000589706 SLIT3O75094 1523 aa7.04□□□□□ -1.28
SMAD4-208ENST00000589706 PLEKHG2Q9H7P9 1386 aa7.04□□□□□ -1.28
SMAD4-208ENST00000589706 LY75O60449 1722 aa7.04□□□□□ -1.28
SMAD4-208ENST00000589706 PXDNLA1KZ92 1463 aa7.04□□□□□ -1.28
SMAD4-208ENST00000589706 CPSF1Q10570 1443 aaKnown RBP7.03□□□□□ -1.28
SMAD4-208ENST00000589706 A0A0G2JLW4 131 aa7.03□□□□□ -1.28
SMAD4-208ENST00000589706 GNB5O14775 395 aa7.03□□□□□ -1.28
SMAD4-208ENST00000589706 SART1O43290 800 aaKnown RBP7.03□□□□□ -1.28
SMAD4-208ENST00000589706 SLITRK5O94991 958 aa7.03□□□□□ -1.28
SMAD4-208ENST00000589706 ZSCAN20P17040 1043 aaPredicted RBP7.03□□□□□ -1.28
SMAD4-208ENST00000589706 RAB6AP20340 208 aa7.03□□□□□ -1.28
SMAD4-208ENST00000589706 PREPP48147 710 aa7.03□□□□□ -1.28
SMAD4-208ENST00000589706 USP11P51784 963 aa7.03□□□□□ -1.28
SMAD4-208ENST00000589706 SNRPNP63162 240 aaKnown RBP7.03□□□□□ -1.28
SMAD4-208ENST00000589706 MAP7Q14244 749 aa7.03□□□□□ -1.28
SMAD4-208ENST00000589706 NBPF9Q3BBW0 867 aa7.03□□□□□ -1.28
SMAD4-208ENST00000589706 TRIM61Q5EBN2 209 aa7.03□□□□□ -1.28
SMAD4-208ENST00000589706 DNTTIP2Q5QJE6 756 aaKnown RBP7.03□□□□□ -1.28
SMAD4-208ENST00000589706 NOL9Q5SY16 702 aaKnown RBP7.03□□□□□ -1.28
SMAD4-208ENST00000589706 SMIM5Q71RC9 77 aa7.03□□□□□ -1.28
SMAD4-208ENST00000589706 RNF141Q8WVD5 230 aa7.03□□□□□ -1.28
SMAD4-208ENST00000589706 BTN2A2Q8WVV5 523 aa7.03□□□□□ -1.28
SMAD4-208ENST00000589706 FBXL18Q96ME1 805 aa7.03□□□□□ -1.28
SMAD4-208ENST00000589706 CEP89Q96ST8 783 aa7.03□□□□□ -1.28
SMAD4-208ENST00000589706 ASPNQ9BXN1 380 aa7.03□□□□□ -1.28
SMAD4-208ENST00000589706 CHPF2Q9P2E5 772 aa7.03□□□□□ -1.28
SMAD4-208ENST00000589706 MCM8Q9UJA3 840 aa7.03□□□□□ -1.28
SMAD4-208ENST00000589706 ZHX1Q9UKY1 873 aaPredicted RBP7.03□□□□□ -1.28
SMAD4-208ENST00000589706 PCDHB12Q9Y5F1 795 aa7.03□□□□□ -1.28
SMAD4-208ENST00000589706 ADGRB1O14514 1584 aa7.03□□□□□ -1.28
SMAD4-208ENST00000589706 PIK3R2O00459 728 aa7.02□□□□□ -1.29
SMAD4-208ENST00000589706 FRAT2O75474 233 aaPredicted RBP7.02□□□□□ -1.29
SMAD4-208ENST00000589706 ALX3O95076 343 aa7.02□□□□□ -1.29
SMAD4-208ENST00000589706 KCNH1O95259 989 aa7.02□□□□□ -1.29
SMAD4-208ENST00000589706 XRCC6P12956 609 aaKnown RBP eCLIP7.02□□□□□ -1.29
SMAD4-208ENST00000589706 ETV3P41162 512 aa7.02□□□□□ -1.29
SMAD4-208ENST00000589706 ZNF445P59923 1031 aa7.02□□□□□ -1.29
SMAD4-208ENST00000589706 PRRT3Q5FWE3 981 aa7.02□□□□□ -1.29
SMAD4-208ENST00000589706 ZNF385CQ66K41 422 aaPredicted RBP7.02□□□□□ -1.29
SMAD4-208ENST00000589706 SHISA2Q6UWI4 295 aa7.02□□□□□ -1.29
SMAD4-208ENST00000589706 TICAM2Q86XR7 235 aa7.02□□□□□ -1.29
SMAD4-208ENST00000589706 MYH16Q9H6N6 1097 aa7.02□□□□□ -1.29
SMAD4-208ENST00000589706 RNF181Q9P0P0 153 aa7.02□□□□□ -1.29
SMAD4-208ENST00000589706 CGGBP1Q9UFW8 167 aaPredicted RBP7.02□□□□□ -1.29
SMAD4-208ENST00000589706 SFMBT1Q9UHJ3 866 aa7.02□□□□□ -1.29
SMAD4-208ENST00000589706 DAGLAQ9Y4D2 1042 aa7.02□□□□□ -1.29
SMAD4-208ENST00000589706 TNRC6CQ9HCJ0 1690 aaKnown RBP7.02□□□□□ -1.29
SMAD4-208ENST00000589706 ANKRD36BQ8N2N9 1353 aa7.01□□□□□ -1.29
SMAD4-208ENST00000589706 GAS2O43903 313 aaKnown RBP7.01□□□□□ -1.29
SMAD4-208ENST00000589706 DLX3O60479 287 aa7.01□□□□□ -1.29
SMAD4-208ENST00000589706 C6orf222P0C671 652 aaPredicted RBP7.01□□□□□ -1.29
SMAD4-208ENST00000589706 VEGFAP15692 232 aaPredicted RBP7.01□□□□□ -1.29
SMAD4-208ENST00000589706 RIPK4P57078 832 aa7.01□□□□□ -1.29
SMAD4-208ENST00000589706 TGFB2P61812 414 aa7.01□□□□□ -1.29
SMAD4-208ENST00000589706 GABREP78334 506 aa7.01□□□□□ -1.29
SMAD4-208ENST00000589706 CCDC181Q5TID7 509 aa7.01□□□□□ -1.29
SMAD4-208ENST00000589706 CDPF1Q6NVV7 123 aa7.01□□□□□ -1.29
SMAD4-208ENST00000589706 SVOPQ8N4V2 548 aa7.01□□□□□ -1.29
SMAD4-208ENST00000589706 KCNH5Q8NCM2 988 aa7.01□□□□□ -1.29
SMAD4-208ENST00000589706 SLC7A14Q8TBB6 771 aa7.01□□□□□ -1.29
SMAD4-208ENST00000589706 SYTL5Q8TDW5 730 aaPredicted RBP7.01□□□□□ -1.29
SMAD4-208ENST00000589706 DDX1Q92499 740 aaKnown RBP7.01□□□□□ -1.29
SMAD4-208ENST00000589706 BRF1Q92994 677 aa7.01□□□□□ -1.29
SMAD4-208ENST00000589706 PSMG3-AS1Q96PY0 264 aa7.01□□□□□ -1.29
SMAD4-208ENST00000589706 CEP41Q9BYV8 373 aa7.01□□□□□ -1.29
SMAD4-208ENST00000589706 SEMA6CQ9H3T2 930 aa7.01□□□□□ -1.29
SMAD4-208ENST00000589706 AKTIPQ9H8T0 292 aa7.01□□□□□ -1.29
SMAD4-208ENST00000589706 TRIM39Q9HCM9 518 aa7.01□□□□□ -1.29
SMAD4-208ENST00000589706 GEMIN8Q9NWZ8 242 aaKnown RBP7.01□□□□□ -1.29
SMAD4-208ENST00000589706 NDOR1Q9UHB4 597 aa7.01□□□□□ -1.29
SMAD4-208ENST00000589706 MKL2Q9ULH7 1088 aa7.01□□□□□ -1.29
SMAD4-208ENST00000589706 DIS3Q9Y2L1 958 aaKnown RBP7.01□□□□□ -1.29
SMAD4-208ENST00000589706 FHOD1Q9Y613 1164 aa7.01□□□□□ -1.29
SMAD4-208ENST00000589706 N4BP2Q86UW6 1770 aaPredicted RBP7□□□□□ -1.29
SMAD4-208ENST00000589706 USP54Q70EL1 1684 aa7□□□□□ -1.29
SMAD4-208ENST00000589706 NSD2O96028 1365 aa7□□□□□ -1.29
SMAD4-208ENST00000589706 ALG1L2C9J202 215 aa7□□□□□ -1.29
SMAD4-208ENST00000589706 EFCAB14O75071 495 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms