RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 AIFM3Q96NN9 605 aa9.75□□□□□ -0.85
VMP1-208ENST00000588617 SAP30BPQ9UHR5 308 aaKnown RBP9.75□□□□□ -0.85
VMP1-208ENST00000588617 INTUQ9ULD6 942 aa9.75□□□□□ -0.85
VMP1-208ENST00000588617 NOC2LQ9Y3T9 749 aaKnown RBP9.75□□□□□ -0.85
VMP1-208ENST00000588617 PCDHGA9Q9Y5G4 932 aaKnown RBP9.75□□□□□ -0.85
VMP1-208ENST00000588617 PCDHGA8Q9Y5G5 932 aa9.75□□□□□ -0.85
VMP1-208ENST00000588617 PCDHGA7Q9Y5G6 932 aa9.75□□□□□ -0.85
VMP1-208ENST00000588617 PCDHGA6Q9Y5G7 932 aa9.75□□□□□ -0.85
VMP1-208ENST00000588617 PCDHGA3Q9Y5H0 932 aa9.75□□□□□ -0.85
VMP1-208ENST00000588617 PCDHGA2Q9Y5H1 932 aa9.75□□□□□ -0.85
VMP1-208ENST00000588617 FRMPD2Q68DX3 1309 aaPredicted RBP9.75□□□□□ -0.85
VMP1-208ENST00000588617 KLHL33A6NCF5 533 aa9.74□□□□□ -0.85
VMP1-208ENST00000588617 PRR33A8MZF0 331 aa9.74□□□□□ -0.85
VMP1-208ENST00000588617 OTOP1Q7RTM1 612 aa9.74□□□□□ -0.85
VMP1-208ENST00000588617 RASSF3Q86WH2 238 aa9.74□□□□□ -0.85
VMP1-208ENST00000588617 CPNE8Q86YQ8 564 aa9.74□□□□□ -0.85
VMP1-208ENST00000588617 BOCQ9BWV1 1114 aa9.74□□□□□ -0.85
VMP1-208ENST00000588617 GPR62Q9BZJ7 368 aa9.74□□□□□ -0.85
VMP1-208ENST00000588617 UBA5Q9GZZ9 404 aa9.74□□□□□ -0.85
VMP1-208ENST00000588617 TOPORSQ9NS56 1045 aaPredicted RBP9.74□□□□□ -0.85
VMP1-208ENST00000588617 GTF2IRD1Q9UHL9 959 aa9.74□□□□□ -0.85
VMP1-208ENST00000588617 TAGLN3Q9UI15 199 aa9.74□□□□□ -0.85
VMP1-208ENST00000588617 SSU72P8A0A1W2PR75 194 aa9.73□□□□□ -0.85
VMP1-208ENST00000588617 GNB5O14775 395 aa9.73□□□□□ -0.85
VMP1-208ENST00000588617 SH3BP5O60239 455 aa9.73□□□□□ -0.85
VMP1-208ENST00000588617 ZNF205O95201 554 aa9.73□□□□□ -0.85
VMP1-208ENST00000588617 FOSP01100 380 aaPredicted RBP9.73□□□□□ -0.85
VMP1-208ENST00000588617 SYPP08247 313 aa9.73□□□□□ -0.85
VMP1-208ENST00000588617 SLC9A1P19634 815 aa9.73□□□□□ -0.85
VMP1-208ENST00000588617 TPP2P29144 1249 aaPredicted RBP9.73□□□□□ -0.85
VMP1-208ENST00000588617 LSP1P33241 339 aa9.73□□□□□ -0.85
VMP1-208ENST00000588617 SNRPNP63162 240 aaKnown RBP9.73□□□□□ -0.85
VMP1-208ENST00000588617 LACTBP83111 547 aaPredicted RBP9.73□□□□□ -0.85
VMP1-208ENST00000588617 RASSF7Q02833 373 aa9.73□□□□□ -0.85
VMP1-208ENST00000588617 LSAMPQ13449 338 aa9.73□□□□□ -0.85
VMP1-208ENST00000588617 ACAP2Q15057 778 aa9.73□□□□□ -0.85
VMP1-208ENST00000588617 TERF2Q15554 542 aa9.73□□□□□ -0.85
VMP1-208ENST00000588617 ZNF174Q15697 407 aa9.73□□□□□ -0.85
VMP1-208ENST00000588617 HSP90AB4PQ58FF6 505 aa9.73□□□□□ -0.85
VMP1-208ENST00000588617 RTP2Q5QGT7 225 aa9.73□□□□□ -0.85
VMP1-208ENST00000588617 PAOXQ6QHF9 649 aa9.73□□□□□ -0.85
VMP1-208ENST00000588617 Q6ZS46 218 aa9.73□□□□□ -0.85
VMP1-208ENST00000588617 FAM214BQ7L5A3 538 aa9.73□□□□□ -0.85
VMP1-208ENST00000588617 C11orf96Q7Z7L8 435 aa9.73□□□□□ -0.85
VMP1-208ENST00000588617 E2F7Q96AV8 911 aa9.73□□□□□ -0.85
VMP1-208ENST00000588617 NUP88Q99567 741 aaPredicted RBP9.73□□□□□ -0.85
VMP1-208ENST00000588617 MAN1C1Q9NR34 630 aa9.73□□□□□ -0.85
VMP1-208ENST00000588617 BSDC1Q9NW68 430 aaPredicted RBP9.73□□□□□ -0.85
VMP1-208ENST00000588617 DDX20Q9UHI6 824 aaKnown RBP9.73□□□□□ -0.85
VMP1-208ENST00000588617 FAM50BQ9Y247 325 aa9.73□□□□□ -0.85
VMP1-208ENST00000588617 INVSQ9Y283 1065 aa9.73□□□□□ -0.85
VMP1-208ENST00000588617 SLC12A8A0AV02 714 aa9.72□□□□□ -0.85
VMP1-208ENST00000588617 TRIM75PA6NK02 468 aa9.72□□□□□ -0.85
VMP1-208ENST00000588617 APAF1O14727 1248 aa9.72□□□□□ -0.85
VMP1-208ENST00000588617 H2AFYO75367 372 aaKnown RBP9.72□□□□□ -0.85
VMP1-208ENST00000588617 ASGR2P07307 311 aa9.72□□□□□ -0.85
VMP1-208ENST00000588617 PDE6AP16499 860 aa9.72□□□□□ -0.85
VMP1-208ENST00000588617 HSPA6P17066 643 aa9.72□□□□□ -0.85
VMP1-208ENST00000588617 KRT15P19012 456 aa9.72□□□□□ -0.85
VMP1-208ENST00000588617 HTRA3P83110 453 aa9.72□□□□□ -0.85
VMP1-208ENST00000588617 RALBP1Q15311 655 aa9.72□□□□□ -0.85
VMP1-208ENST00000588617 SAFBQ15424 915 aaKnown RBP eCLIP9.72□□□□□ -0.85
VMP1-208ENST00000588617 MBLAC2Q68D91 279 aa9.72□□□□□ -0.85
VMP1-208ENST00000588617 OSTM1Q86WC4 334 aa9.72□□□□□ -0.85
VMP1-208ENST00000588617 SPICE1Q8N0Z3 855 aa9.72□□□□□ -0.85
VMP1-208ENST00000588617 MFSD4AQ8N468 514 aa9.72□□□□□ -0.85
VMP1-208ENST00000588617 UTP4Q969X6 686 aaKnown RBP9.72□□□□□ -0.85
VMP1-208ENST00000588617 DAAM1Q9Y4D1 1078 aa9.72□□□□□ -0.85
VMP1-208ENST00000588617 SPO11Q9Y5K1 396 aa9.72□□□□□ -0.85
VMP1-208ENST00000588617 TIMM13Q9Y5L4 95 aaPredicted RBP9.72□□□□□ -0.85
VMP1-208ENST00000588617 CAPN6Q9Y6Q1 641 aa9.72□□□□□ -0.85
VMP1-208ENST00000588617 CCDC189A1A4V9 331 aa9.71□□□□□ -0.86
VMP1-208ENST00000588617 ANO9A1A5B4 782 aa9.71□□□□□ -0.86
VMP1-208ENST00000588617 PIK3R2O00459 728 aa9.71□□□□□ -0.86
VMP1-208ENST00000588617 ZNF865P0CJ78 1059 aaPredicted RBP9.71□□□□□ -0.86
VMP1-208ENST00000588617 PHKG2P15735 406 aa9.71□□□□□ -0.86
VMP1-208ENST00000588617 BCL6P41182 706 aa9.71□□□□□ -0.86
VMP1-208ENST00000588617 PCBP3P57721 371 aaKnown RBP9.71□□□□□ -0.86
VMP1-208ENST00000588617 RBM10P98175 930 aaKnown RBP9.71□□□□□ -0.86
VMP1-208ENST00000588617 LAPTM5Q13571 262 aa9.71□□□□□ -0.86
VMP1-208ENST00000588617 C22orf34Q6ZV56 151 aa9.71□□□□□ -0.86
VMP1-208ENST00000588617 TTC17Q96AE7 1141 aa9.71□□□□□ -0.86
VMP1-208ENST00000588617 LENG1Q96BZ8 264 aaPredicted RBP9.71□□□□□ -0.86
VMP1-208ENST00000588617 HEXIM2Q96MH2 286 aaKnown RBP9.71□□□□□ -0.86
VMP1-208ENST00000588617 PTCHD1Q96NR3 888 aa9.71□□□□□ -0.86
VMP1-208ENST00000588617 KCNF1Q9H3M0 494 aa9.71□□□□□ -0.86
VMP1-208ENST00000588617 TOMM22Q9NS69 142 aa9.71□□□□□ -0.86
VMP1-208ENST00000588617 ATG3Q9NT62 314 aa9.71□□□□□ -0.86
VMP1-208ENST00000588617 AP5S1Q9NUS5 200 aa9.71□□□□□ -0.86
VMP1-208ENST00000588617 CLDND1Q9NY35 253 aa9.71□□□□□ -0.86
VMP1-208ENST00000588617 GNAT3A8MTJ3 354 aa9.7□□□□□ -0.86
VMP1-208ENST00000588617 PPFIA4O75335 1185 aa9.7□□□□□ -0.86
VMP1-208ENST00000588617 SRFP11831 508 aa9.7□□□□□ -0.86
VMP1-208ENST00000588617 GPR3P46089 330 aa9.7□□□□□ -0.86
VMP1-208ENST00000588617 IREB2P48200 963 aaKnown RBP9.7□□□□□ -0.86
VMP1-208ENST00000588617 JAM2P57087 298 aa9.7□□□□□ -0.86
VMP1-208ENST00000588617 RPL11P62913 178 aaKnown RBP9.7□□□□□ -0.86
VMP1-208ENST00000588617 IRF9Q00978 393 aa9.7□□□□□ -0.86
VMP1-208ENST00000588617 IFIT1BQ5T764 474 aaKnown RBP9.7□□□□□ -0.86
VMP1-208ENST00000588617 GPR158Q5T848 1215 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms