RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	INTU	Q9ULD6	942 aa		6.24	□□□□□ -1.41
SS18-223	ENST00000583595	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	6.23	□□□□□ -1.41
SS18-223	ENST00000583595	WDHD1	O75717	1129 aa	Predicted RBP	6.23	□□□□□ -1.41
SS18-223	ENST00000583595	FKBP9	O95302	570 aa		6.23	□□□□□ -1.41
SS18-223	ENST00000583595	MT-CO1	P00395	513 aa		6.23	□□□□□ -1.41
SS18-223	ENST00000583595	SNRPB2	P08579	225 aa	Known RBP	6.23	□□□□□ -1.41
SS18-223	ENST00000583595	CT47B1	P0C2W7	299 aa	Predicted RBP	6.23	□□□□□ -1.41
SS18-223	ENST00000583595	ITGA4	P13612	1032 aa		6.23	□□□□□ -1.41
SS18-223	ENST00000583595	HOXC12	P31275	282 aa		6.23	□□□□□ -1.41
SS18-223	ENST00000583595	IARS	P41252	1262 aa	Known RBP	6.23	□□□□□ -1.41
SS18-223	ENST00000583595	HK2	P52789	917 aa		6.23	□□□□□ -1.41
SS18-223	ENST00000583595	IL2	P60568	153 aa		6.23	□□□□□ -1.41
SS18-223	ENST00000583595	IRX6	P78412	446 aa	Predicted RBP	6.23	□□□□□ -1.41
SS18-223	ENST00000583595	CYP4F3	Q08477	520 aa		6.23	□□□□□ -1.41
SS18-223	ENST00000583595	NOL9	Q5SY16	702 aa	Known RBP	6.23	□□□□□ -1.41
SS18-223	ENST00000583595	SLC35F1	Q5T1Q4	408 aa		6.23	□□□□□ -1.41
SS18-223	ENST00000583595	LCE1D	Q5T752	114 aa		6.23	□□□□□ -1.41
SS18-223	ENST00000583595	POMZP3	Q6PJE2	187 aa		6.23	□□□□□ -1.41
SS18-223	ENST00000583595	FKBP9P1	Q75LS8	142 aa		6.23	□□□□□ -1.41
SS18-223	ENST00000583595	VWCE	Q96DN2	955 aa		6.23	□□□□□ -1.41
SS18-223	ENST00000583595	ASPN	Q9BXN1	380 aa		6.23	□□□□□ -1.41
SS18-223	ENST00000583595	MAF1	Q9H063	256 aa		6.23	□□□□□ -1.41
SS18-223	ENST00000583595	TMEM59L	Q9UK28	342 aa		6.23	□□□□□ -1.41
SS18-223	ENST00000583595	ZBTB21	Q9ULJ3	1066 aa		6.23	□□□□□ -1.41
SS18-223	ENST00000583595	DCAF1	Q9Y4B6	1507 aa		6.23	□□□□□ -1.41
SS18-223	ENST00000583595	GLRX3	O76003	335 aa	Known RBP	6.22	□□□□□ -1.41
SS18-223	ENST00000583595	TRIM27	P14373	513 aa		6.22	□□□□□ -1.41
SS18-223	ENST00000583595	RAC2	P15153	192 aa		6.22	□□□□□ -1.41
SS18-223	ENST00000583595	GUCY1A3	Q02108	690 aa		6.22	□□□□□ -1.41
SS18-223	ENST00000583595	EGR3	Q06889	387 aa		6.22	□□□□□ -1.41
SS18-223	ENST00000583595	MAP4K2	Q12851	820 aa		6.22	□□□□□ -1.41
SS18-223	ENST00000583595	ODF1	Q14990	250 aa		6.22	□□□□□ -1.41
SS18-223	ENST00000583595	SART3	Q15020	963 aa	Known RBP	6.22	□□□□□ -1.41
SS18-223	ENST00000583595	ZRSR2	Q15696	482 aa	Known RBP	6.22	□□□□□ -1.41
SS18-223	ENST00000583595	ZNF124	Q15973	351 aa		6.22	□□□□□ -1.41
SS18-223	ENST00000583595	INAVA	Q3KP66	663 aa		6.22	□□□□□ -1.41
SS18-223	ENST00000583595	CXorf57	Q6NSI4	855 aa	Known RBP	6.22	□□□□□ -1.41
SS18-223	ENST00000583595	MPZL3	Q6UWV2	235 aa		6.22	□□□□□ -1.41
SS18-223	ENST00000583595	MAMDC2	Q7Z304	686 aa	Predicted RBP	6.22	□□□□□ -1.41
SS18-223	ENST00000583595	KSR1	Q8IVT5	923 aa		6.22	□□□□□ -1.41
SS18-223	ENST00000583595	SMC1B	Q8NDV3	1235 aa		6.22	□□□□□ -1.41
SS18-223	ENST00000583595	USP33	Q8TEY7	942 aa		6.22	□□□□□ -1.41
SS18-223	ENST00000583595	C1orf159	Q96HA4	380 aa		6.22	□□□□□ -1.41
SS18-223	ENST00000583595	CCDC140	Q96MF4	163 aa		6.22	□□□□□ -1.41
SS18-223	ENST00000583595	NKX2-4	Q9H2Z4	354 aa		6.22	□□□□□ -1.41
SS18-223	ENST00000583595	NOL6	Q9H6R4	1146 aa	Known RBP	6.22	□□□□□ -1.41
SS18-223	ENST00000583595	PPCS	Q9HAB8	311 aa		6.22	□□□□□ -1.41
SS18-223	ENST00000583595	TAGLN3	Q9UI15	199 aa		6.22	□□□□□ -1.41
SS18-223	ENST00000583595	DAAM1	Q9Y4D1	1078 aa		6.22	□□□□□ -1.41
SS18-223	ENST00000583595		A0A087WZG4	1122 aa		6.21	□□□□□ -1.42
SS18-223	ENST00000583595		B4E1Z4	1266 aa		6.21	□□□□□ -1.42
SS18-223	ENST00000583595	TRAF5	O00463	557 aa		6.21	□□□□□ -1.42
SS18-223	ENST00000583595	SNUPN	O95149	360 aa	Known RBP	6.21	□□□□□ -1.42
SS18-223	ENST00000583595	PF4V1	P10720	104 aa		6.21	□□□□□ -1.42
SS18-223	ENST00000583595	LTK	P29376	864 aa		6.21	□□□□□ -1.42
SS18-223	ENST00000583595	ERVFC1	P60507	584 aa		6.21	□□□□□ -1.42
SS18-223	ENST00000583595	MESP2	Q0VG99	397 aa		6.21	□□□□□ -1.42
SS18-223	ENST00000583595	MORC3	Q14149	939 aa		6.21	□□□□□ -1.42
SS18-223	ENST00000583595	CLEC16A	Q2KHT3	1053 aa		6.21	□□□□□ -1.42
SS18-223	ENST00000583595	DPY19L1	Q2PZI1	675 aa		6.21	□□□□□ -1.42
SS18-223	ENST00000583595	LONRF3	Q496Y0	759 aa		6.21	□□□□□ -1.42
SS18-223	ENST00000583595	ZFYVE27	Q5T4F4	411 aa		6.21	□□□□□ -1.42
SS18-223	ENST00000583595	IGSF22	Q8N9C0	903 aa		6.21	□□□□□ -1.42
SS18-223	ENST00000583595	KREMEN2	Q8NCW0	462 aa		6.21	□□□□□ -1.42
SS18-223	ENST00000583595	MYLIP	Q8WY64	445 aa		6.21	□□□□□ -1.42
SS18-223	ENST00000583595	ORAI3	Q9BRQ5	295 aa		6.21	□□□□□ -1.42
SS18-223	ENST00000583595	CYP26B1	Q9NR63	512 aa		6.21	□□□□□ -1.42
SS18-223	ENST00000583595	SPTLC3	Q9NUV7	552 aa		6.21	□□□□□ -1.42
SS18-223	ENST00000583595	GNL3L	Q9NVN8	582 aa	Known RBP	6.21	□□□□□ -1.42
SS18-223	ENST00000583595	USP25	Q9UHP3	1055 aa		6.21	□□□□□ -1.42
SS18-223	ENST00000583595	APOBEC2	Q9Y235	224 aa	Known RBP	6.21	□□□□□ -1.42
SS18-223	ENST00000583595	ANKRD6	Q9Y2G4	727 aa		6.21	□□□□□ -1.42
SS18-223	ENST00000583595	DIS3	Q9Y2L1	958 aa	Known RBP	6.21	□□□□□ -1.42
SS18-223	ENST00000583595	GPR55	Q9Y2T6	319 aa	Predicted RBP	6.21	□□□□□ -1.42
SS18-223	ENST00000583595	PCDHA11	Q9Y5I1	949 aa		6.21	□□□□□ -1.42
SS18-223	ENST00000583595	SHISA3	A0PJX4	238 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	FZD9	O00144	591 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	CBX4	O00257	560 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	ARNTL	O00327	626 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	FOS	P01100	380 aa	Predicted RBP	6.2	□□□□□ -1.42
SS18-223	ENST00000583595	IFIT2	P09913	472 aa	Known RBP	6.2	□□□□□ -1.42
SS18-223	ENST00000583595	NBPF7	P0C2Y1	421 aa	Predicted RBP	6.2	□□□□□ -1.42
SS18-223	ENST00000583595	ERVK-21	P61565	698 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	FZD5	Q13467	585 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	PKN1	Q16512	942 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	MINDY4	Q4G0A6	757 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	ATP13A4	Q4VNC1	1196 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	COBLL1	Q53SF7	1204 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	HSP90AB4P	Q58FF6	505 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	STYK1	Q6J9G0	422 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	PRR23B	Q6ZRT6	265 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	DDX53	Q86TM3	631 aa	Known RBP	6.2	□□□□□ -1.42
SS18-223	ENST00000583595	KIF18B	Q86Y91	864 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	CPA6	Q8N4T0	437 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	6.2	□□□□□ -1.42
SS18-223	ENST00000583595	PJA1	Q8NG27	643 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	ABHD4	Q8TB40	342 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	DCAF4	Q8WV16	495 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	CHTF18	Q8WVB6	975 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	E2F7	Q96AV8	911 aa		6.2	□□□□□ -1.42

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