RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 SLC5A4Q9NY91 659 aa18.25■□□□□ 0.51
SS18-211ENST00000578954 VWA3AA6NCI4 1184 aa18.24■□□□□ 0.51
SS18-211ENST00000578954 GOLGA6L4A6NEF3 574 aa18.24■□□□□ 0.51
SS18-211ENST00000578954 TNPO2O14787 897 aaKnown RBP18.24■□□□□ 0.51
SS18-211ENST00000578954 MBD3O95983 291 aa18.24■□□□□ 0.51
SS18-211ENST00000578954 ARP10275 920 aa18.24■□□□□ 0.51
SS18-211ENST00000578954 FCGRTP55899 365 aa18.24■□□□□ 0.51
SS18-211ENST00000578954 SP3Q02447 781 aa18.24■□□□□ 0.51
SS18-211ENST00000578954 PDE4DQ08499 809 aa18.24■□□□□ 0.51
SS18-211ENST00000578954 SEMA3FQ13275 785 aa18.24■□□□□ 0.51
SS18-211ENST00000578954 MTMR1Q13613 665 aa18.24■□□□□ 0.51
SS18-211ENST00000578954 PDIA5Q14554 519 aa18.24■□□□□ 0.51
SS18-211ENST00000578954 GNPTABQ3T906 1256 aa18.24■□□□□ 0.51
SS18-211ENST00000578954 MAML3Q96JK9 1138 aa18.24■□□□□ 0.51
SS18-211ENST00000578954 CDHR1Q96JP9 859 aa18.24■□□□□ 0.51
SS18-211ENST00000578954 AK8Q96MA6 479 aa18.24■□□□□ 0.51
SS18-211ENST00000578954 NUDT12Q9BQG2 462 aa18.24■□□□□ 0.51
SS18-211ENST00000578954 WDR11Q9BZH6 1224 aa18.24■□□□□ 0.51
SS18-211ENST00000578954 AGO4Q9HCK5 861 aaKnown RBP18.24■□□□□ 0.51
SS18-211ENST00000578954 PSMD10O75832 226 aa18.23■□□□□ 0.51
SS18-211ENST00000578954 IGHA2P01877 340 aa18.23■□□□□ 0.51
SS18-211ENST00000578954 TXKP42681 527 aa18.23■□□□□ 0.51
SS18-211ENST00000578954 SPIRE1Q08AE8 756 aa18.23■□□□□ 0.51
SS18-211ENST00000578954 TMEM266Q2M3C6 531 aa18.23■□□□□ 0.51
SS18-211ENST00000578954 B3GNT9Q6UX72 402 aa18.23■□□□□ 0.51
SS18-211ENST00000578954 DPP9Q86TI2 863 aa18.23■□□□□ 0.51
SS18-211ENST00000578954 NPLOC4Q8TAT6 608 aa18.23■□□□□ 0.51
SS18-211ENST00000578954 GPT2Q8TD30 523 aa18.23■□□□□ 0.51
SS18-211ENST00000578954 MRPS27Q92552 414 aaKnown RBP18.23■□□□□ 0.51
SS18-211ENST00000578954 ZFP91Q96JP5 570 aaPredicted RBP18.23■□□□□ 0.51
SS18-211ENST00000578954 TRIM47Q96LD4 638 aa18.23■□□□□ 0.51
SS18-211ENST00000578954 RIT2Q99578 217 aa18.23■□□□□ 0.51
SS18-211ENST00000578954 TTC12Q9H892 705 aaPredicted RBP18.23■□□□□ 0.51
SS18-211ENST00000578954 VAV3Q9UKW4 847 aa18.23■□□□□ 0.51
SS18-211ENST00000578954 HPSEQ9Y251 543 aa18.23■□□□□ 0.51
SS18-211ENST00000578954 DDX49Q9Y6V7 483 aaKnown RBP18.23■□□□□ 0.51
SS18-211ENST00000578954 SYNGAP1Q96PV0 1343 aa18.23■□□□□ 0.51
SS18-211ENST00000578954 KIAA1217Q5T5P2 1943 aa18.22■□□□□ 0.51
SS18-211ENST00000578954 ZSWIM8A7E2V4 1837 aa18.22■□□□□ 0.51
SS18-211ENST00000578954 SPATA31C2B4DYI2 1134 aa18.22■□□□□ 0.51
SS18-211ENST00000578954 GPR25O00155 361 aa18.22■□□□□ 0.51
SS18-211ENST00000578954 RGS2P41220 211 aa18.22■□□□□ 0.51
SS18-211ENST00000578954 PSMC4P43686 418 aa18.22■□□□□ 0.51
SS18-211ENST00000578954 MAP2K1Q02750 393 aaPredicted RBP18.22■□□□□ 0.51
SS18-211ENST00000578954 IRF5Q13568 498 aa18.22■□□□□ 0.51
SS18-211ENST00000578954 KLHL40Q2TBA0 621 aa18.22■□□□□ 0.51
SS18-211ENST00000578954 ARMCX2Q7L311 632 aa18.22■□□□□ 0.51
SS18-211ENST00000578954 APBA2Q99767 749 aa18.22■□□□□ 0.51
SS18-211ENST00000578954 ZNF577Q9BSK1 485 aa18.22■□□□□ 0.51
SS18-211ENST00000578954 RAB34Q9BZG1 259 aa18.22■□□□□ 0.51
SS18-211ENST00000578954 GOLPH3LQ9H4A5 285 aa18.22■□□□□ 0.51
SS18-211ENST00000578954 PCDHA12Q9UN75 941 aa18.22■□□□□ 0.51
SS18-211ENST00000578954 MCM3APO60318 1980 aa18.22■□□□□ 0.51
SS18-211ENST00000578954 IPO5O00410 1097 aaKnown RBP18.21■□□□□ 0.51
SS18-211ENST00000578954 DHX15O43143 795 aaKnown RBP18.21■□□□□ 0.51
SS18-211ENST00000578954 XRCC5P13010 732 aaKnown RBP18.21■□□□□ 0.51
SS18-211ENST00000578954 PPP2R5CQ13362 524 aa18.21■□□□□ 0.51
SS18-211ENST00000578954 SKOR2Q2VWA4 1001 aaPredicted RBP18.21■□□□□ 0.51
SS18-211ENST00000578954 OLFML2BQ68BL8 750 aa18.21■□□□□ 0.51
SS18-211ENST00000578954 FSIP1Q8NA03 581 aa18.21■□□□□ 0.51
SS18-211ENST00000578954 ENGASEQ8NFI3 743 aa18.21■□□□□ 0.51
SS18-211ENST00000578954 ARHGAP39Q9C0H5 1083 aa18.21■□□□□ 0.51
SS18-211ENST00000578954 CCSER1Q9C0I3 900 aa18.21■□□□□ 0.51
SS18-211ENST00000578954 KATNBL1Q9H079 304 aa18.21■□□□□ 0.51
SS18-211ENST00000578954 TBC1D22BQ9NU19 505 aa18.21■□□□□ 0.51
SS18-211ENST00000578954 NFASCO94856 1347 aa18.21■□□□□ 0.51
SS18-211ENST00000578954 SLC26A4O43511 780 aa18.2■□□□□ 0.5
SS18-211ENST00000578954 MARCH6O60337 910 aa18.2■□□□□ 0.5
SS18-211ENST00000578954 TGFB3P10600 412 aa18.2■□□□□ 0.5
SS18-211ENST00000578954 PFKFB1P16118 471 aa18.2■□□□□ 0.5
SS18-211ENST00000578954 KCNA2P16389 499 aa18.2■□□□□ 0.5
SS18-211ENST00000578954 LIG1P18858 919 aa18.2■□□□□ 0.5
SS18-211ENST00000578954 TECP42680 631 aa18.2■□□□□ 0.5
SS18-211ENST00000578954 CAP1Q01518 475 aa18.2■□□□□ 0.5
SS18-211ENST00000578954 FAM160A1Q05DH4 1040 aa18.2■□□□□ 0.5
SS18-211ENST00000578954 ITGB3BPQ13352 177 aaPredicted RBP18.2■□□□□ 0.5
SS18-211ENST00000578954 KIF22Q14807 665 aa18.2■□□□□ 0.5
SS18-211ENST00000578954 LRCH2Q5VUJ6 765 aa18.2■□□□□ 0.5
SS18-211ENST00000578954 USP49Q70CQ1 688 aa18.2■□□□□ 0.5
SS18-211ENST00000578954 OTOP1Q7RTM1 612 aa18.2■□□□□ 0.5
SS18-211ENST00000578954 DNAJC5GQ8N7S2 189 aa18.2■□□□□ 0.5
SS18-211ENST00000578954 SYMPKQ92797 1274 aaKnown RBP18.2■□□□□ 0.5
SS18-211ENST00000578954 GJA10Q969M2 543 aa18.2■□□□□ 0.5
SS18-211ENST00000578954 SENP7Q9BQF6 1050 aa18.2■□□□□ 0.5
SS18-211ENST00000578954 TINF2Q9BSI4 451 aa18.2■□□□□ 0.5
SS18-211ENST00000578954 TEKT3Q9BXF9 490 aa18.2■□□□□ 0.5
SS18-211ENST00000578954 VTA1Q9NP79 307 aa18.2■□□□□ 0.5
SS18-211ENST00000578954 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.2■□□□□ 0.5
SS18-211ENST00000578954 FAM13BQ9NYF5 915 aa18.2■□□□□ 0.5
SS18-211ENST00000578954 CASP8AP2Q9UKL3 1982 aa18.2■□□□□ 0.5
SS18-211ENST00000578954 A0A1B0GVL5 298 aa18.19■□□□□ 0.5
SS18-211ENST00000578954 RBM47A0AV96 593 aaKnown RBP18.19■□□□□ 0.5
SS18-211ENST00000578954 POTEMA6NI47 508 aa18.19■□□□□ 0.5
SS18-211ENST00000578954 GAS7O60861 476 aa18.19■□□□□ 0.5
SS18-211ENST00000578954 ATP9AO75110 1047 aa18.19■□□□□ 0.5
SS18-211ENST00000578954 SNAI1O95863 264 aaPredicted RBP18.19■□□□□ 0.5
SS18-211ENST00000578954 SNW1Q13573 536 aaKnown RBP18.19■□□□□ 0.5
SS18-211ENST00000578954 SPECC1Q5M775 1068 aa18.19■□□□□ 0.5
SS18-211ENST00000578954 KCNV1Q6PIU1 500 aa18.19■□□□□ 0.5
SS18-211ENST00000578954 CCDC73Q6ZRK6 1079 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms