RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 H0YGN5 161 aa7.15□□□□□ -1.26
VPS53-219ENST00000576019 SOX1O00570 391 aaPredicted RBP7.15□□□□□ -1.26
VPS53-219ENST00000576019 EFCAB14O75071 495 aa7.15□□□□□ -1.26
VPS53-219ENST00000576019 TCEA3O75764 348 aa7.15□□□□□ -1.26
VPS53-219ENST00000576019 SNUPNO95149 360 aaKnown RBP7.15□□□□□ -1.26
VPS53-219ENST00000576019 EPHA1P21709 976 aa7.15□□□□□ -1.26
VPS53-219ENST00000576019 SERPINB3P29508 390 aa7.15□□□□□ -1.26
VPS53-219ENST00000576019 CDC25BP30305 580 aa7.15□□□□□ -1.26
VPS53-219ENST00000576019 NEUROD1Q13562 356 aa7.15□□□□□ -1.26
VPS53-219ENST00000576019 GRM3Q14832 879 aa7.15□□□□□ -1.26
VPS53-219ENST00000576019 MINDY4Q4G0A6 757 aa7.15□□□□□ -1.26
VPS53-219ENST00000576019 COBLL1Q53SF7 1204 aa7.15□□□□□ -1.26
VPS53-219ENST00000576019 IQSEC1Q6DN90 963 aa7.15□□□□□ -1.26
VPS53-219ENST00000576019 CYFIP1Q7L576 1253 aa7.15□□□□□ -1.26
VPS53-219ENST00000576019 PHACTR4Q8IZ21 702 aa7.15□□□□□ -1.26
VPS53-219ENST00000576019 CBARPQ8N350 705 aaPredicted RBP7.15□□□□□ -1.26
VPS53-219ENST00000576019 FAM13CQ8NE31 585 aa7.15□□□□□ -1.26
VPS53-219ENST00000576019 DHRS1Q96LJ7 313 aa7.15□□□□□ -1.26
VPS53-219ENST00000576019 KLHL25Q9H0H3 589 aa7.15□□□□□ -1.26
VPS53-219ENST00000576019 AAASQ9NRG9 546 aa7.15□□□□□ -1.26
VPS53-219ENST00000576019 RPS6KL1Q9Y6S9 549 aa7.15□□□□□ -1.26
VPS53-219ENST00000576019 TMEM265A0A087WTH1 108 aa7.14□□□□□ -1.27
VPS53-219ENST00000576019 ZEB2O60315 1214 aa7.14□□□□□ -1.27
VPS53-219ENST00000576019 DLX3O60479 287 aa7.14□□□□□ -1.27
VPS53-219ENST00000576019 CCND1P24385 295 aa7.14□□□□□ -1.27
VPS53-219ENST00000576019 HTTP42858 3142 aa7.14□□□□□ -1.27
VPS53-219ENST00000576019 SCNN1BP51168 640 aa7.14□□□□□ -1.27
VPS53-219ENST00000576019 IL2P60568 153 aa7.14□□□□□ -1.27
VPS53-219ENST00000576019 PKN2Q16513 984 aaKnown RBP7.14□□□□□ -1.27
VPS53-219ENST00000576019 DCAF15Q66K64 600 aa7.14□□□□□ -1.27
VPS53-219ENST00000576019 TOM1L2Q6ZVM7 507 aa7.14□□□□□ -1.27
VPS53-219ENST00000576019 UBE2R2Q712K3 238 aaPredicted RBP7.14□□□□□ -1.27
VPS53-219ENST00000576019 ADAT2Q7Z6V5 191 aaKnown RBP7.14□□□□□ -1.27
VPS53-219ENST00000576019 FAM35AQ86V20 835 aa7.14□□□□□ -1.27
VPS53-219ENST00000576019 C12orf40Q86WS4 652 aa7.14□□□□□ -1.27
VPS53-219ENST00000576019 ZNF513Q8N8E2 541 aaPredicted RBP7.14□□□□□ -1.27
VPS53-219ENST00000576019 CLIP3Q96DZ5 547 aa7.14□□□□□ -1.27
VPS53-219ENST00000576019 STRBPQ96SI9 672 aaKnown RBP7.14□□□□□ -1.27
VPS53-219ENST00000576019 P2RX7Q99572 595 aaKnown RBP7.14□□□□□ -1.27
VPS53-219ENST00000576019 CORO1BQ9BR76 489 aa7.14□□□□□ -1.27
VPS53-219ENST00000576019 PRO3102Q9H379 93 aa7.14□□□□□ -1.27
VPS53-219ENST00000576019 NDFIP2Q9NV92 336 aa7.14□□□□□ -1.27
VPS53-219ENST00000576019 MAP3K20Q9NYL2 800 aaKnown RBP7.14□□□□□ -1.27
VPS53-219ENST00000576019 ADAM30Q9UKF2 790 aa7.14□□□□□ -1.27
VPS53-219ENST00000576019 LZTS1Q9Y250 596 aa7.14□□□□□ -1.27
VPS53-219ENST00000576019 SCN4AP35499 1836 aa7.13□□□□□ -1.27
VPS53-219ENST00000576019 TCRBV16S1A1N1A0A5B0 115 aa7.13□□□□□ -1.27
VPS53-219ENST00000576019 ST8SIA5O15466 376 aa7.13□□□□□ -1.27
VPS53-219ENST00000576019 CAPNS1P04632 268 aa7.13□□□□□ -1.27
VPS53-219ENST00000576019 U2AF1L5P0DN76 240 aaPredicted RBP7.13□□□□□ -1.27
VPS53-219ENST00000576019 BMP1P13497 986 aa7.13□□□□□ -1.27
VPS53-219ENST00000576019 ADCYAP1R1P41586 468 aa7.13□□□□□ -1.27
VPS53-219ENST00000576019 HTR3AP46098 478 aa7.13□□□□□ -1.27
VPS53-219ENST00000576019 CABP4P57796 275 aa7.13□□□□□ -1.27
VPS53-219ENST00000576019 ETF1P62495 437 aaKnown RBP7.13□□□□□ -1.27
VPS53-219ENST00000576019 U2AF1Q01081 240 aaKnown RBP eCLIP7.13□□□□□ -1.27
VPS53-219ENST00000576019 PDE3AQ14432 1141 aa7.13□□□□□ -1.27
VPS53-219ENST00000576019 CIAPIN1Q6FI81 312 aa7.13□□□□□ -1.27
VPS53-219ENST00000576019 NXPE1Q8N323 547 aa7.13□□□□□ -1.27
VPS53-219ENST00000576019 BTN2A2Q8WVV5 523 aa7.13□□□□□ -1.27
VPS53-219ENST00000576019 FUBP3Q96I24 572 aaKnown RBP eCLIP7.13□□□□□ -1.27
VPS53-219ENST00000576019 SMG9Q9H0W8 520 aaKnown RBP7.13□□□□□ -1.27
VPS53-219ENST00000576019 ANLNQ9NQW6 1124 aa7.13□□□□□ -1.27
VPS53-219ENST00000576019 PIM2Q9P1W9 311 aa7.13□□□□□ -1.27
VPS53-219ENST00000576019 DDX20Q9UHI6 824 aaKnown RBP7.13□□□□□ -1.27
VPS53-219ENST00000576019 DNMT3LQ9UJW3 386 aa7.13□□□□□ -1.27
VPS53-219ENST00000576019 CCNL1Q9UK58 526 aaPredicted RBP7.13□□□□□ -1.27
VPS53-219ENST00000576019 TACC3Q9Y6A5 838 aa7.13□□□□□ -1.27
VPS53-219ENST00000576019 CCDC88AQ3V6T2 1871 aa7.13□□□□□ -1.27
VPS53-219ENST00000576019 AXIN1O15169 862 aa7.12□□□□□ -1.27
VPS53-219ENST00000576019 ZNF862O60290 1169 aa7.12□□□□□ -1.27
VPS53-219ENST00000576019 UBOX5O94941 541 aa7.12□□□□□ -1.27
VPS53-219ENST00000576019 LIG1P18858 919 aa7.12□□□□□ -1.27
VPS53-219ENST00000576019 SART3Q15020 963 aaKnown RBP7.12□□□□□ -1.27
VPS53-219ENST00000576019 PCBP2Q15366 365 aaKnown RBP eCLIP7.12□□□□□ -1.27
VPS53-219ENST00000576019 SF1Q15637 639 aaKnown RBP7.12□□□□□ -1.27
VPS53-219ENST00000576019 ARHGAP29Q52LW3 1261 aa7.12□□□□□ -1.27
VPS53-219ENST00000576019 GDF6Q6KF10 455 aaPredicted RBP7.12□□□□□ -1.27
VPS53-219ENST00000576019 EPM2AIP1Q7L775 607 aaPredicted RBP7.12□□□□□ -1.27
VPS53-219ENST00000576019 CCDC144CPQ8IYA2 1237 aa7.12□□□□□ -1.27
VPS53-219ENST00000576019 FAM9BQ8IZU0 186 aa7.12□□□□□ -1.27
VPS53-219ENST00000576019 ENAHQ8N8S7 591 aaPredicted RBP7.12□□□□□ -1.27
VPS53-219ENST00000576019 ANKRD42Q8N9B4 389 aa7.12□□□□□ -1.27
VPS53-219ENST00000576019 BVESQ8NE79 360 aa7.12□□□□□ -1.27
VPS53-219ENST00000576019 ADCY4Q8NFM4 1077 aa7.12□□□□□ -1.27
VPS53-219ENST00000576019 PARD3BQ8TEW8 1205 aa7.12□□□□□ -1.27
VPS53-219ENST00000576019 WDR89Q96FK6 387 aaPredicted RBP7.12□□□□□ -1.27
VPS53-219ENST00000576019 WNK4Q96J92 1243 aa7.12□□□□□ -1.27
VPS53-219ENST00000576019 MAGEB10Q96LZ2 347 aaPredicted RBP7.12□□□□□ -1.27
VPS53-219ENST00000576019 ELAC2Q9BQ52 826 aaKnown RBP7.12□□□□□ -1.27
VPS53-219ENST00000576019 GBP3Q9H0R5 595 aa7.12□□□□□ -1.27
VPS53-219ENST00000576019 TAF1DQ9H5J8 278 aaPredicted RBP7.12□□□□□ -1.27
VPS53-219ENST00000576019 VTA1Q9NP79 307 aa7.12□□□□□ -1.27
VPS53-219ENST00000576019 KRT82Q9NSB4 513 aa7.12□□□□□ -1.27
VPS53-219ENST00000576019 SAGE1Q9NXZ1 904 aa7.12□□□□□ -1.27
VPS53-219ENST00000576019 SWAP70Q9UH65 585 aa7.12□□□□□ -1.27
VPS53-219ENST00000576019 NAGPAQ9UK23 515 aa7.12□□□□□ -1.27
VPS53-219ENST00000576019 TRAF6Q9Y4K3 522 aa7.12□□□□□ -1.27
VPS53-219ENST00000576019 ZFHX4Q86UP3 3567 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 PAPPA2Q9BXP8 1791 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms