RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 DDX41Q9UJV9 622 aaKnown RBP20.67■□□□□ 0.9
CCDC40-213ENST00000574933 MYH9P35579 1960 aaKnown RBP20.66■□□□□ 0.9
CCDC40-213ENST00000574933 MSCO60682 206 aa20.66■□□□□ 0.9
CCDC40-213ENST00000574933 ARIH2O95376 493 aa20.66■□□□□ 0.9
CCDC40-213ENST00000574933 ZSCAN22P10073 491 aaPredicted RBP20.66■□□□□ 0.9
CCDC40-213ENST00000574933 ADCYAP1R1P41586 468 aa20.66■□□□□ 0.9
CCDC40-213ENST00000574933 MTFR1Q15390 333 aa20.66■□□□□ 0.9
CCDC40-213ENST00000574933 LETM2Q2VYF4 491 aa20.66■□□□□ 0.9
CCDC40-213ENST00000574933 COL13A1Q5TAT6 717 aaPredicted RBP20.66■□□□□ 0.9
CCDC40-213ENST00000574933 UNC93B1Q9H1C4 597 aa20.66■□□□□ 0.9
CCDC40-213ENST00000574933 NOL7Q9UMY1 257 aaKnown RBP20.66■□□□□ 0.9
CCDC40-213ENST00000574933 GNEQ9Y223 722 aaKnown RBP20.66■□□□□ 0.9
CCDC40-213ENST00000574933 Q9Y3F1 56 aa20.66■□□□□ 0.9
CCDC40-213ENST00000574933 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.65■□□□□ 0.9
CCDC40-213ENST00000574933 ADCY6O43306 1168 aa20.65■□□□□ 0.9
CCDC40-213ENST00000574933 DUSP11O75319 330 aaKnown RBP20.65■□□□□ 0.9
CCDC40-213ENST00000574933 TDP2O95551 362 aa20.65■□□□□ 0.9
CCDC40-213ENST00000574933 BRD1O95696 1058 aa20.65■□□□□ 0.9
CCDC40-213ENST00000574933 CCL5P13501 91 aa20.65■□□□□ 0.9
CCDC40-213ENST00000574933 SMPD1P17405 629 aa20.65■□□□□ 0.9
CCDC40-213ENST00000574933 TOB1P50616 345 aaPredicted RBP20.65■□□□□ 0.9
CCDC40-213ENST00000574933 NKX3-2P78367 333 aa20.65■□□□□ 0.9
CCDC40-213ENST00000574933 TNFAIP2Q03169 654 aa20.65■□□□□ 0.9
CCDC40-213ENST00000574933 MTMR1Q13613 665 aa20.65■□□□□ 0.9
CCDC40-213ENST00000574933 RILPL1Q5EBL4 403 aa20.65■□□□□ 0.9
CCDC40-213ENST00000574933 PLA2G4DQ86XP0 818 aa20.65■□□□□ 0.9
CCDC40-213ENST00000574933 KCNH7Q9NS40 1196 aa20.65■□□□□ 0.9
CCDC40-213ENST00000574933 DAXXQ9UER7 740 aaPredicted RBP20.65■□□□□ 0.9
CCDC40-213ENST00000574933 DDX20Q9UHI6 824 aaKnown RBP20.65■□□□□ 0.9
CCDC40-213ENST00000574933 MRVI1Q9Y6F6 885 aa20.65■□□□□ 0.9
CCDC40-213ENST00000574933 CENPFP49454 3210 aa20.65■□□□□ 0.9
CCDC40-213ENST00000574933 WNT7AO00755 349 aa20.64■□□□□ 0.89
CCDC40-213ENST00000574933 ARP10275 920 aa20.64■□□□□ 0.89
CCDC40-213ENST00000574933 TXNP10599 105 aaKnown RBP20.64■□□□□ 0.89
CCDC40-213ENST00000574933 PKP1Q13835 747 aa20.64■□□□□ 0.89
CCDC40-213ENST00000574933 MYSM1Q5VVJ2 828 aa20.64■□□□□ 0.89
CCDC40-213ENST00000574933 LHX8Q68G74 356 aa20.64■□□□□ 0.89
CCDC40-213ENST00000574933 FERMT3Q86UX7 667 aa20.64■□□□□ 0.89
CCDC40-213ENST00000574933 IPO9Q96P70 1041 aaKnown RBP20.64■□□□□ 0.89
CCDC40-213ENST00000574933 NFASCO94856 1347 aa20.63■□□□□ 0.89
CCDC40-213ENST00000574933 F13A1P00488 732 aa20.63■□□□□ 0.89
CCDC40-213ENST00000574933 KCNA2P16389 499 aa20.63■□□□□ 0.89
CCDC40-213ENST00000574933 CNGA1P29973 690 aa20.63■□□□□ 0.89
CCDC40-213ENST00000574933 SP2Q02086 613 aa20.63■□□□□ 0.89
CCDC40-213ENST00000574933 PRR16Q569H4 304 aa20.63■□□□□ 0.89
CCDC40-213ENST00000574933 TTC38Q5R3I4 469 aa20.63■□□□□ 0.89
CCDC40-213ENST00000574933 EMID1Q96A84 441 aaPredicted RBP20.63■□□□□ 0.89
CCDC40-213ENST00000574933 RNF208Q9H0X6 261 aa20.63■□□□□ 0.89
CCDC40-213ENST00000574933 UPF3AQ9H1J1 476 aaKnown RBP20.63■□□□□ 0.89
CCDC40-213ENST00000574933 AGO4Q9HCK5 861 aaKnown RBP20.63■□□□□ 0.89
CCDC40-213ENST00000574933 DDX25Q9UHL0 483 aaKnown RBP20.63■□□□□ 0.89
CCDC40-213ENST00000574933 ZDHHC9Q9Y397 364 aa20.63■□□□□ 0.89
CCDC40-213ENST00000574933 TBX3O15119 743 aa20.62■□□□□ 0.89
CCDC40-213ENST00000574933 SLC37A4O43826 429 aa20.62■□□□□ 0.89
CCDC40-213ENST00000574933 CCNT1O60563 726 aaKnown RBP20.62■□□□□ 0.89
CCDC40-213ENST00000574933 ATP9AO75110 1047 aa20.62■□□□□ 0.89
CCDC40-213ENST00000574933 GJB1P08034 283 aa20.62■□□□□ 0.89
CCDC40-213ENST00000574933 RARBP10826 455 aa20.62■□□□□ 0.89
CCDC40-213ENST00000574933 CAPN2P17655 700 aa20.62■□□□□ 0.89
CCDC40-213ENST00000574933 UBA1P22314 1058 aaKnown RBP20.62■□□□□ 0.89
CCDC40-213ENST00000574933 NEDD9Q14511 834 aa20.62■□□□□ 0.89
CCDC40-213ENST00000574933 LY6KQ17RY6 165 aa20.62■□□□□ 0.89
CCDC40-213ENST00000574933 TMEM63BQ5T3F8 832 aa20.62■□□□□ 0.89
CCDC40-213ENST00000574933 GIMAP8Q8ND71 665 aaPredicted RBP20.62■□□□□ 0.89
CCDC40-213ENST00000574933 ETNPPLQ8TBG4 499 aa20.62■□□□□ 0.89
CCDC40-213ENST00000574933 KCNMB3Q9NPA1 279 aa20.62■□□□□ 0.89
CCDC40-213ENST00000574933 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.62■□□□□ 0.89
CCDC40-213ENST00000574933 CIZ1Q9ULV3 898 aaPredicted RBP20.62■□□□□ 0.89
CCDC40-213ENST00000574933 MSH4O15457 936 aa20.61■□□□□ 0.89
CCDC40-213ENST00000574933 GJA9P57773 515 aa20.61■□□□□ 0.89
CCDC40-213ENST00000574933 NUCB2P80303 420 aa20.61■□□□□ 0.89
CCDC40-213ENST00000574933 ARHGAP1Q07960 439 aa20.61■□□□□ 0.89
CCDC40-213ENST00000574933 CELF3Q5SZQ8 465 aaKnown RBP20.61■□□□□ 0.89
CCDC40-213ENST00000574933 SLC5A5Q92911 643 aa20.61■□□□□ 0.89
CCDC40-213ENST00000574933 FAM20AQ96MK3 541 aa20.61■□□□□ 0.89
CCDC40-213ENST00000574933 CRISPLD2Q9H0B8 497 aa20.61■□□□□ 0.89
CCDC40-213ENST00000574933 KAT6AQ92794 2004 aa20.6■□□□□ 0.89
CCDC40-213ENST00000574933 POTEFA5A3E0 1075 aa20.6■□□□□ 0.89
CCDC40-213ENST00000574933 IPO5O00410 1097 aaKnown RBP20.6■□□□□ 0.89
CCDC40-213ENST00000574933 DHX15O43143 795 aaKnown RBP20.6■□□□□ 0.89
CCDC40-213ENST00000574933 GH1P01241 217 aa20.6■□□□□ 0.89
CCDC40-213ENST00000574933 ITGB3BPQ13352 177 aaPredicted RBP20.6■□□□□ 0.89
CCDC40-213ENST00000574933 METTL7BQ6UX53 244 aa20.6■□□□□ 0.89
CCDC40-213ENST00000574933 COPS5Q92905 334 aa20.6■□□□□ 0.89
CCDC40-213ENST00000574933 RIT2Q99578 217 aa20.6■□□□□ 0.89
CCDC40-213ENST00000574933 TBC1D22BQ9NU19 505 aa20.6■□□□□ 0.89
CCDC40-213ENST00000574933 PCDHB6Q9Y5E3 794 aa20.6■□□□□ 0.89
CCDC40-213ENST00000574933 SCN10AQ9Y5Y9 1956 aa20.59■□□□□ 0.89
CCDC40-213ENST00000574933 CTAGE5O15320 804 aa20.59■□□□□ 0.89
CCDC40-213ENST00000574933 ADAMTS4O75173 837 aa20.59■□□□□ 0.89
CCDC40-213ENST00000574933 FARP2O94887 1054 aaPredicted RBP20.59■□□□□ 0.89
CCDC40-213ENST00000574933 GGPS1O95749 300 aa20.59■□□□□ 0.89
CCDC40-213ENST00000574933 ATP2B1P20020 1258 aa20.59■□□□□ 0.89
CCDC40-213ENST00000574933 CST5P28325 142 aaPredicted RBP20.59■□□□□ 0.89
CCDC40-213ENST00000574933 LAMC2Q13753 1193 aa20.59■□□□□ 0.89
CCDC40-213ENST00000574933 ZNF174Q15697 407 aa20.59■□□□□ 0.89
CCDC40-213ENST00000574933 GJC2Q5T442 439 aaPredicted RBP20.59■□□□□ 0.89
CCDC40-213ENST00000574933 TLK2Q86UE8 772 aa20.59■□□□□ 0.89
CCDC40-213ENST00000574933 C4orf32Q8N8J7 132 aa20.59■□□□□ 0.89
CCDC40-213ENST00000574933 HAS1Q92839 578 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms