RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 USP17L2Q6R6M4 530 aa11.87□□□□□ -0.51
CCDC40-207ENST00000572253 LSM14BQ9BX40 385 aaKnown RBP11.87□□□□□ -0.51
CCDC40-207ENST00000572253 EPB41L5Q9HCM4 733 aa11.87□□□□□ -0.51
CCDC40-207ENST00000572253 DOT1LQ8TEK3 1739 aa11.87□□□□□ -0.51
CCDC40-207ENST00000572253 SSBP05455 408 aaKnown RBP eCLIP11.86□□□□□ -0.51
CCDC40-207ENST00000572253 LIG3P49916 1009 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 PPP4CP60510 307 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 GUCY2DQ02846 1103 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 KLHDC7AQ5VTJ3 777 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 TPTE2Q6XPS3 522 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 TSEN2Q8NCE0 465 aaKnown RBP11.86□□□□□ -0.51
CCDC40-207ENST00000572253 NEDD1Q8NHV4 660 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 DDX12PQ92771 950 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 MTMR8Q96EF0 704 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 EHD2Q9NZN4 543 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 RGL2O15211 777 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 PLCG2P16885 1265 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 FAM26FQ5R3K3 315 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 LRRC55Q6ZSA7 311 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 ZNF804AQ7Z570 1209 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 WHAMMQ8TF30 809 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 RABEP2Q9H5N1 569 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.86□□□□□ -0.51
CCDC40-207ENST00000572253 COL14A1Q05707 1796 aaKnown RBP11.86□□□□□ -0.51
CCDC40-207ENST00000572253 ERCC3P19447 782 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 CDK8P49336 464 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 LRRC41Q15345 812 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 IFI16Q16666 785 aaKnown RBP11.86□□□□□ -0.51
CCDC40-207ENST00000572253 MMS22LQ6ZRQ5 1243 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 ARL8AQ96BM9 186 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 CEP63Q96MT8 703 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 ZIM3Q96PE6 472 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 PNMA5Q96PV4 448 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 MTMR9Q96QG7 549 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 NFU1Q9UMS0 254 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 THRAP3Q9Y2W1 955 aaKnown RBP11.86□□□□□ -0.51
CCDC40-207ENST00000572253 XIRP1Q702N8 1843 aaKnown RBP11.86□□□□□ -0.51
CCDC40-207ENST00000572253 ZNF335Q9H4Z2 1342 aaPredicted RBP11.86□□□□□ -0.51
CCDC40-207ENST00000572253 PALMO75781 387 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 TNNI2P48788 182 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 POLR2FP61218 127 aaKnown RBP11.86□□□□□ -0.51
CCDC40-207ENST00000572253 SETQ01105 290 aaPredicted RBP11.86□□□□□ -0.51
CCDC40-207ENST00000572253 RAPGEF1Q13905 1077 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 DIXDC1Q155Q3 683 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 ASIC2Q16515 512 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 FAM83BQ5T0W9 1011 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 TBC1D9BQ66K14 1250 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 CCDC65Q8IXS2 484 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 ATP6V0A2Q9Y487 856 aa11.86□□□□□ -0.51
CCDC40-207ENST00000572253 H0YHG0 523 aa11.85□□□□□ -0.51
CCDC40-207ENST00000572253 ZEB2O60315 1214 aa11.85□□□□□ -0.51
CCDC40-207ENST00000572253 KLHL30Q0D2K2 578 aa11.85□□□□□ -0.51
CCDC40-207ENST00000572253 TTC19Q6DKK2 380 aaPredicted RBP11.85□□□□□ -0.51
CCDC40-207ENST00000572253 TEX11Q8IYF3 940 aa11.85□□□□□ -0.51
CCDC40-207ENST00000572253 GDF3Q9NR23 364 aa11.85□□□□□ -0.51
CCDC40-207ENST00000572253 TMEM260Q9NX78 707 aa11.85□□□□□ -0.51
CCDC40-207ENST00000572253 KIAA1551Q9HCM1 1747 aa11.85□□□□□ -0.51
CCDC40-207ENST00000572253 RBAK-RBAKDNI3L0D1 243 aa11.85□□□□□ -0.51
CCDC40-207ENST00000572253 ZPR1O75312 459 aa11.85□□□□□ -0.51
CCDC40-207ENST00000572253 PDCLQ13371 301 aa11.85□□□□□ -0.51
CCDC40-207ENST00000572253 NAB2Q15742 525 aa11.85□□□□□ -0.51
CCDC40-207ENST00000572253 MAATS1Q7Z4T9 603 aa11.85□□□□□ -0.51
CCDC40-207ENST00000572253 MS4A14Q96JA4 679 aa11.85□□□□□ -0.51
CCDC40-207ENST00000572253 KRT12Q99456 494 aa11.85□□□□□ -0.51
CCDC40-207ENST00000572253 PANK4Q9NVE7 773 aa11.85□□□□□ -0.51
CCDC40-207ENST00000572253 POTEMA6NI47 508 aa11.85□□□□□ -0.51
CCDC40-207ENST00000572253 ATP1A2P50993 1020 aa11.85□□□□□ -0.51
CCDC40-207ENST00000572253 KIAA0753Q2KHM9 967 aa11.85□□□□□ -0.51
CCDC40-207ENST00000572253 ASTE1Q2TB18 679 aaPredicted RBP11.85□□□□□ -0.51
CCDC40-207ENST00000572253 TTMPQ5BVD1 217 aa11.85□□□□□ -0.51
CCDC40-207ENST00000572253 ARFGAP2Q8N6H7 521 aa11.85□□□□□ -0.51
CCDC40-207ENST00000572253 OTUD6BQ8N6M0 293 aa11.85□□□□□ -0.51
CCDC40-207ENST00000572253 TBC1D5Q92609 795 aa11.85□□□□□ -0.51
CCDC40-207ENST00000572253 UBA5Q9GZZ9 404 aa11.85□□□□□ -0.51
CCDC40-207ENST00000572253 NT5C3AQ9H0P0 336 aa11.85□□□□□ -0.51
CCDC40-207ENST00000572253 LEMD3Q9Y2U8 911 aa11.85□□□□□ -0.51
CCDC40-207ENST00000572253 MYH10P35580 1976 aa11.84□□□□□ -0.51
CCDC40-207ENST00000572253 FTCDO95954 541 aa11.84□□□□□ -0.51
CCDC40-207ENST00000572253 CARSP49589 748 aaKnown RBP11.84□□□□□ -0.51
CCDC40-207ENST00000572253 COASYQ13057 564 aa11.84□□□□□ -0.51
CCDC40-207ENST00000572253 HLTFQ14527 1009 aaKnown RBP eCLIP11.84□□□□□ -0.51
CCDC40-207ENST00000572253 KCTD16Q68DU8 428 aa11.84□□□□□ -0.51
CCDC40-207ENST00000572253 C16orf86Q6ZW13 317 aa11.84□□□□□ -0.51
CCDC40-207ENST00000572253 TXNRD3Q86VQ6 643 aa11.84□□□□□ -0.51
CCDC40-207ENST00000572253 COL4A1P02462 1669 aa11.84□□□□□ -0.51
CCDC40-207ENST00000572253 KDM3AQ9Y4C1 1321 aa11.84□□□□□ -0.51
CCDC40-207ENST00000572253 CCDC88AQ3V6T2 1871 aa11.84□□□□□ -0.51
CCDC40-207ENST00000572253 NKRFO15226 690 aaKnown RBP eCLIP11.84□□□□□ -0.51
CCDC40-207ENST00000572253 KRT18P05783 430 aaKnown RBP11.84□□□□□ -0.51
CCDC40-207ENST00000572253 GUCY2FP51841 1108 aa11.84□□□□□ -0.51
CCDC40-207ENST00000572253 ARID5AQ03989 594 aa11.84□□□□□ -0.51
CCDC40-207ENST00000572253 ENOX2Q16206 610 aaKnown RBP11.84□□□□□ -0.51
CCDC40-207ENST00000572253 SLC18A3Q16572 532 aa11.84□□□□□ -0.51
CCDC40-207ENST00000572253 KDM7AQ6ZMT4 941 aa11.84□□□□□ -0.51
CCDC40-207ENST00000572253 SLF2Q8IX21 1173 aa11.84□□□□□ -0.51
CCDC40-207ENST00000572253 MARCH10Q8NA82 808 aaPredicted RBP11.84□□□□□ -0.51
CCDC40-207ENST00000572253 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.84□□□□□ -0.51
CCDC40-207ENST00000572253 SALL4Q9UJQ4 1053 aa11.84□□□□□ -0.51
CCDC40-207ENST00000572253 SAMM50Q9Y512 469 aa11.84□□□□□ -0.51
CCDC40-207ENST00000572253 MAST2Q6P0Q8 1798 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 125.4 ms