RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 SMARCC2Q8TAQ2 1214 aa11.24□□□□□ -0.61
CIITA-207ENST00000571545 MYLIPQ8WY64 445 aa11.24□□□□□ -0.61
CIITA-207ENST00000571545 SPATA33Q96N06 139 aa11.24□□□□□ -0.61
CIITA-207ENST00000571545 EHMT1Q9H9B1 1298 aa11.24□□□□□ -0.61
CIITA-207ENST00000571545 MLXIPQ9HAP2 919 aa11.24□□□□□ -0.61
CIITA-207ENST00000571545 GTF2IRD1Q9UHL9 959 aa11.24□□□□□ -0.61
CIITA-207ENST00000571545 SLC12A7Q9Y666 1083 aa11.24□□□□□ -0.61
CIITA-207ENST00000571545 GBF1Q92538 1859 aa11.23□□□□□ -0.61
CIITA-207ENST00000571545 DLL1O00548 723 aa11.23□□□□□ -0.61
CIITA-207ENST00000571545 NOP56O00567 594 aaKnown RBP11.23□□□□□ -0.61
CIITA-207ENST00000571545 FIBPO43427 364 aa11.23□□□□□ -0.61
CIITA-207ENST00000571545 EFCAB14O75071 495 aa11.23□□□□□ -0.61
CIITA-207ENST00000571545 GGPS1O95749 300 aa11.23□□□□□ -0.61
CIITA-207ENST00000571545 HMGB1P09429 215 aaKnown RBP11.23□□□□□ -0.61
CIITA-207ENST00000571545 IQCF3P0C7M6 154 aa11.23□□□□□ -0.61
CIITA-207ENST00000571545 PRR29P0C7W0 189 aa11.23□□□□□ -0.61
CIITA-207ENST00000571545 ATP2A2P16615 1042 aaKnown RBP11.23□□□□□ -0.61
CIITA-207ENST00000571545 UBA1P22314 1058 aaKnown RBP11.23□□□□□ -0.61
CIITA-207ENST00000571545 PSEN2P49810 448 aa11.23□□□□□ -0.61
CIITA-207ENST00000571545 CHMP4BP1P59074 171 aa11.23□□□□□ -0.61
CIITA-207ENST00000571545 MFSD10Q14728 455 aa11.23□□□□□ -0.61
CIITA-207ENST00000571545 NECTIN1Q15223 517 aa11.23□□□□□ -0.61
CIITA-207ENST00000571545 CREB3L3Q68CJ9 461 aa11.23□□□□□ -0.61
CIITA-207ENST00000571545 SGMS1Q86VZ5 419 aa11.23□□□□□ -0.61
CIITA-207ENST00000571545 GIMAP8Q8ND71 665 aaPredicted RBP11.23□□□□□ -0.61
CIITA-207ENST00000571545 PHOSPHO2Q8TCD6 241 aa11.23□□□□□ -0.61
CIITA-207ENST00000571545 SCLYQ96I15 445 aa11.23□□□□□ -0.61
CIITA-207ENST00000571545 CDHR1Q96JP9 859 aa11.23□□□□□ -0.61
CIITA-207ENST00000571545 INPP4AQ96PE3 977 aaPredicted RBP11.23□□□□□ -0.61
CIITA-207ENST00000571545 RBM28Q9NW13 759 aaKnown RBP11.23□□□□□ -0.61
CIITA-207ENST00000571545 ZNF215Q9UL58 517 aaPredicted RBP11.23□□□□□ -0.61
CIITA-207ENST00000571545 PCDHA11Q9Y5I1 949 aa11.23□□□□□ -0.61
CIITA-207ENST00000571545 LAMA2P24043 3122 aaKnown RBP11.22□□□□□ -0.61
CIITA-207ENST00000571545 COL6A3P12111 3177 aa11.22□□□□□ -0.61
CIITA-207ENST00000571545 KIF28PB7ZC32 967 aa11.22□□□□□ -0.61
CIITA-207ENST00000571545 hCG_1984214I3L0E3 225 aa11.22□□□□□ -0.61
CIITA-207ENST00000571545 CDC45O75419 566 aa11.22□□□□□ -0.61
CIITA-207ENST00000571545 SELPP16109 830 aa11.22□□□□□ -0.61
CIITA-207ENST00000571545 ICAM3P32942 547 aa11.22□□□□□ -0.61
CIITA-207ENST00000571545 KCNJ6P48051 423 aa11.22□□□□□ -0.61
CIITA-207ENST00000571545 RCAN1P53805 252 aa11.22□□□□□ -0.61
CIITA-207ENST00000571545 PTK7Q13308 1070 aa11.22□□□□□ -0.61
CIITA-207ENST00000571545 SCN5AQ14524 2016 aa11.22□□□□□ -0.61
CIITA-207ENST00000571545 KIAA0753Q2KHM9 967 aa11.22□□□□□ -0.61
CIITA-207ENST00000571545 MYSM1Q5VVJ2 828 aa11.22□□□□□ -0.61
CIITA-207ENST00000571545 PCNX4Q63HM2 1172 aa11.22□□□□□ -0.61
CIITA-207ENST00000571545 PPP2R2DQ66LE6 453 aa11.22□□□□□ -0.61
CIITA-207ENST00000571545 METTL7BQ6UX53 244 aa11.22□□□□□ -0.61
CIITA-207ENST00000571545 EMSYQ7Z589 1322 aa11.22□□□□□ -0.61
CIITA-207ENST00000571545 DEFB128Q7Z7B8 93 aa11.22□□□□□ -0.61
CIITA-207ENST00000571545 NLRX1Q86UT6 975 aa11.22□□□□□ -0.61
CIITA-207ENST00000571545 ZNF713Q8N859 430 aaPredicted RBP11.22□□□□□ -0.61
CIITA-207ENST00000571545 FTOQ9C0B1 505 aaKnown RBP eCLIP11.22□□□□□ -0.61
CIITA-207ENST00000571545 SENP2Q9HC62 589 aa11.22□□□□□ -0.61
CIITA-207ENST00000571545 CXXC1Q9P0U4 656 aaPredicted RBP11.22□□□□□ -0.61
CIITA-207ENST00000571545 TAF6LQ9Y6J9 622 aa11.22□□□□□ -0.61
CIITA-207ENST00000571545 TRIP12Q14669 1992 aaPredicted RBP11.21□□□□□ -0.61
CIITA-207ENST00000571545 SPDYE3A6NKU9 549 aa11.21□□□□□ -0.61
CIITA-207ENST00000571545 HAS3O00219 553 aa11.21□□□□□ -0.61
CIITA-207ENST00000571545 CAND2O75155 1236 aa11.21□□□□□ -0.61
CIITA-207ENST00000571545 RGS20O76081 388 aa11.21□□□□□ -0.61
CIITA-207ENST00000571545 ZNF286BP0CG31 522 aa11.21□□□□□ -0.61
CIITA-207ENST00000571545 GNAT1P11488 350 aa11.21□□□□□ -0.61
CIITA-207ENST00000571545 GRIN2CQ14957 1233 aa11.21□□□□□ -0.61
CIITA-207ENST00000571545 SLC35G1Q2M3R5 365 aa11.21□□□□□ -0.61
CIITA-207ENST00000571545 GDF6Q6KF10 455 aaPredicted RBP11.21□□□□□ -0.61
CIITA-207ENST00000571545 LRRC8DQ7L1W4 858 aa11.21□□□□□ -0.61
CIITA-207ENST00000571545 FANCBQ8NB91 859 aa11.21□□□□□ -0.61
CIITA-207ENST00000571545 KAT2BQ92831 832 aa11.21□□□□□ -0.61
CIITA-207ENST00000571545 SENP7Q9BQF6 1050 aa11.21□□□□□ -0.61
CIITA-207ENST00000571545 ALG1Q9BT22 464 aa11.21□□□□□ -0.61
CIITA-207ENST00000571545 MYL10Q9BUA6 226 aa11.21□□□□□ -0.61
CIITA-207ENST00000571545 USP26Q9BXU7 913 aa11.21□□□□□ -0.61
CIITA-207ENST00000571545 GLT8D2Q9H1C3 349 aa11.21□□□□□ -0.61
CIITA-207ENST00000571545 PSTPIP2Q9H939 334 aa11.21□□□□□ -0.61
CIITA-207ENST00000571545 MYO9BQ13459 2157 aa11.2□□□□□ -0.62
CIITA-207ENST00000571545 PBX2P40425 430 aa11.2□□□□□ -0.62
CIITA-207ENST00000571545 HSDL1Q3SXM5 330 aa11.2□□□□□ -0.62
CIITA-207ENST00000571545 TSGA10IPQ3SY00 556 aa11.2□□□□□ -0.62
CIITA-207ENST00000571545 PPP1R18Q6NYC8 613 aa11.2□□□□□ -0.62
CIITA-207ENST00000571545 CNKSR3Q6P9H4 555 aa11.2□□□□□ -0.62
CIITA-207ENST00000571545 TMTC3Q6ZXV5 915 aa11.2□□□□□ -0.62
CIITA-207ENST00000571545 MICU3Q86XE3 530 aa11.2□□□□□ -0.62
CIITA-207ENST00000571545 IL31RAQ8NI17 732 aa11.2□□□□□ -0.62
CIITA-207ENST00000571545 PIBF1Q8WXW3 757 aa11.2□□□□□ -0.62
CIITA-207ENST00000571545 SYMPKQ92797 1274 aaKnown RBP11.2□□□□□ -0.62
CIITA-207ENST00000571545 GPRASP2Q96D09 838 aa11.2□□□□□ -0.62
CIITA-207ENST00000571545 NEK1Q96PY6 1258 aa11.2□□□□□ -0.62
CIITA-207ENST00000571545 TSPYL2Q9H2G4 693 aaPredicted RBP11.2□□□□□ -0.62
CIITA-207ENST00000571545 HDAC6Q9UBN7 1215 aa11.2□□□□□ -0.62
CIITA-207ENST00000571545 CCDC196A0A1B0GTZ2 297 aa11.19□□□□□ -0.62
CIITA-207ENST00000571545 ABHD14A-ACY1A0A1B0GW23 586 aa11.19□□□□□ -0.62
CIITA-207ENST00000571545 C17orf102A2RUQ5 167 aa11.19□□□□□ -0.62
CIITA-207ENST00000571545 GRXCR1A8MXD5 290 aa11.19□□□□□ -0.62
CIITA-207ENST00000571545 SPATA31C2B4DYI2 1134 aa11.19□□□□□ -0.62
CIITA-207ENST00000571545 H3BRB1 525 aa11.19□□□□□ -0.62
CIITA-207ENST00000571545 MEIS2O14770 477 aa11.19□□□□□ -0.62
CIITA-207ENST00000571545 MAFGO15525 162 aa11.19□□□□□ -0.62
CIITA-207ENST00000571545 PLEKHA8P1O95397 391 aa11.19□□□□□ -0.62
CIITA-207ENST00000571545 LGALS2P05162 132 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms