RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 MOXD1Q6UVY6 613 aa10.59□□□□□ -0.71
VPS35-211ENST00000569950 B3GNT9Q6UX72 402 aa10.59□□□□□ -0.71
VPS35-211ENST00000569950 NIPA1Q7RTP0 329 aa10.59□□□□□ -0.71
VPS35-211ENST00000569950 ETNPPLQ8TBG4 499 aa10.59□□□□□ -0.71
VPS35-211ENST00000569950 HAS1Q92839 578 aa10.59□□□□□ -0.71
VPS35-211ENST00000569950 COPS5Q92905 334 aa10.59□□□□□ -0.71
VPS35-211ENST00000569950 TMEM60Q9H2L4 133 aa10.59□□□□□ -0.71
VPS35-211ENST00000569950 KCNMB3Q9NPA1 279 aa10.59□□□□□ -0.71
VPS35-211ENST00000569950 JADE2Q9NQC1 790 aa10.59□□□□□ -0.71
VPS35-211ENST00000569950 RTEL1Q9NZ71 1219 aa10.59□□□□□ -0.71
VPS35-211ENST00000569950 DDX41Q9UJV9 622 aaKnown RBP10.59□□□□□ -0.71
VPS35-211ENST00000569950 KIF3AQ9Y496 699 aa10.59□□□□□ -0.71
VPS35-211ENST00000569950 SCN10AQ9Y5Y9 1956 aa10.59□□□□□ -0.71
VPS35-211ENST00000569950 CCDC194A0A1B0GVG4 234 aa10.58□□□□□ -0.72
VPS35-211ENST00000569950 MSH4O15457 936 aa10.58□□□□□ -0.72
VPS35-211ENST00000569950 STAM2O75886 525 aa10.58□□□□□ -0.72
VPS35-211ENST00000569950 ZSCAN22P10073 491 aaPredicted RBP10.58□□□□□ -0.72
VPS35-211ENST00000569950 UBA1P22314 1058 aaKnown RBP10.58□□□□□ -0.72
VPS35-211ENST00000569950 ANP32AP39687 249 aaKnown RBP10.58□□□□□ -0.72
VPS35-211ENST00000569950 ARHGAP1Q07960 439 aa10.58□□□□□ -0.72
VPS35-211ENST00000569950 SLC9C1Q4G0N8 1177 aa10.58□□□□□ -0.72
VPS35-211ENST00000569950 Q4G0T1 1027 aa10.58□□□□□ -0.72
VPS35-211ENST00000569950 MYSM1Q5VVJ2 828 aa10.58□□□□□ -0.72
VPS35-211ENST00000569950 MFSD14CQ5VZR4 134 aa10.58□□□□□ -0.72
VPS35-211ENST00000569950 PPP4R3AQ6IN85 833 aa10.58□□□□□ -0.72
VPS35-211ENST00000569950 NEK8Q86SG6 692 aa10.58□□□□□ -0.72
VPS35-211ENST00000569950 GJA10Q969M2 543 aa10.58□□□□□ -0.72
VPS35-211ENST00000569950 GPRASP2Q96D09 838 aa10.58□□□□□ -0.72
VPS35-211ENST00000569950 FTOQ9C0B1 505 aaKnown RBP eCLIP10.58□□□□□ -0.72
VPS35-211ENST00000569950 KCNH7Q9NS40 1196 aa10.58□□□□□ -0.72
VPS35-211ENST00000569950 PCDHB6Q9Y5E3 794 aa10.58□□□□□ -0.72
VPS35-211ENST00000569950 MRVI1Q9Y6F6 885 aa10.58□□□□□ -0.72
VPS35-211ENST00000569950 ALPK3Q96L96 1907 aa10.57□□□□□ -0.72
VPS35-211ENST00000569950 MYADML2A6NDP7 307 aa10.57□□□□□ -0.72
VPS35-211ENST00000569950 SEPT4O43236 478 aa10.57□□□□□ -0.72
VPS35-211ENST00000569950 ADAMTS4O75173 837 aa10.57□□□□□ -0.72
VPS35-211ENST00000569950 F13A1P00488 732 aa10.57□□□□□ -0.72
VPS35-211ENST00000569950 CCL5P13501 91 aa10.57□□□□□ -0.72
VPS35-211ENST00000569950 SPIRE1Q08AE8 756 aa10.57□□□□□ -0.72
VPS35-211ENST00000569950 LY6KQ17RY6 165 aa10.57□□□□□ -0.72
VPS35-211ENST00000569950 DUSP28Q4G0W2 176 aa10.57□□□□□ -0.72
VPS35-211ENST00000569950 CCSAPQ6IQ19 270 aaPredicted RBP10.57□□□□□ -0.72
VPS35-211ENST00000569950 SEPT14Q6ZU15 432 aa10.57□□□□□ -0.72
VPS35-211ENST00000569950 SCFD2Q8WU76 684 aa10.57□□□□□ -0.72
VPS35-211ENST00000569950 SLC5A5Q92911 643 aa10.57□□□□□ -0.72
VPS35-211ENST00000569950 IPO9Q96P70 1041 aaKnown RBP10.57□□□□□ -0.72
VPS35-211ENST00000569950 MTMR9Q96QG7 549 aa10.57□□□□□ -0.72
VPS35-211ENST00000569950 UIMC1Q96RL1 719 aa10.57□□□□□ -0.72
VPS35-211ENST00000569950 CRISPLD2Q9H0B8 497 aa10.57□□□□□ -0.72
VPS35-211ENST00000569950 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.57□□□□□ -0.72
VPS35-211ENST00000569950 UPF3AQ9H1J1 476 aaKnown RBP10.57□□□□□ -0.72
VPS35-211ENST00000569950 AGO4Q9HCK5 861 aaKnown RBP10.57□□□□□ -0.72
VPS35-211ENST00000569950 BRMS1Q9HCU9 246 aa10.57□□□□□ -0.72
VPS35-211ENST00000569950 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.57□□□□□ -0.72
VPS35-211ENST00000569950 ZHX1Q9UKY1 873 aaPredicted RBP10.57□□□□□ -0.72
VPS35-211ENST00000569950 MYH9P35579 1960 aaKnown RBP10.56□□□□□ -0.72
VPS35-211ENST00000569950 H3BQV1 296 aa10.56□□□□□ -0.72
VPS35-211ENST00000569950 FIBPO43427 364 aa10.56□□□□□ -0.72
VPS35-211ENST00000569950 PSMD10O75832 226 aa10.56□□□□□ -0.72
VPS35-211ENST00000569950 FARP2O94887 1054 aaPredicted RBP10.56□□□□□ -0.72
VPS35-211ENST00000569950 CCNE2O96020 404 aa10.56□□□□□ -0.72
VPS35-211ENST00000569950 HSP90AA1P07900 732 aaKnown RBP10.56□□□□□ -0.72
VPS35-211ENST00000569950 HOXD8P13378 290 aaPredicted RBP10.56□□□□□ -0.72
VPS35-211ENST00000569950 TRAPPC10P48553 1259 aa10.56□□□□□ -0.72
VPS35-211ENST00000569950 PTPAQ15257 358 aa10.56□□□□□ -0.72
VPS35-211ENST00000569950 SAFBQ15424 915 aaKnown RBP eCLIP10.56□□□□□ -0.72
VPS35-211ENST00000569950 IL17AQ16552 155 aa10.56□□□□□ -0.72
VPS35-211ENST00000569950 LETM2Q2VYF4 491 aa10.56□□□□□ -0.72
VPS35-211ENST00000569950 PRR16Q569H4 304 aa10.56□□□□□ -0.72
VPS35-211ENST00000569950 IFFO2Q5TF58 517 aa10.56□□□□□ -0.72
VPS35-211ENST00000569950 ANO1Q5XXA6 986 aa10.56□□□□□ -0.72
VPS35-211ENST00000569950 MCTP1Q6DN14 999 aa10.56□□□□□ -0.72
VPS35-211ENST00000569950 IQSEC1Q6DN90 963 aa10.56□□□□□ -0.72
VPS35-211ENST00000569950 BRAPQ7Z569 592 aa10.56□□□□□ -0.72
VPS35-211ENST00000569950 PLA2G4DQ86XP0 818 aa10.56□□□□□ -0.72
VPS35-211ENST00000569950 VAV3Q9UKW4 847 aa10.56□□□□□ -0.72
VPS35-211ENST00000569950 CNPY2Q9Y2B0 182 aa10.56□□□□□ -0.72
VPS35-211ENST00000569950 SYNRGQ9UMZ2 1314 aa10.56□□□□□ -0.72
VPS35-211ENST00000569950 TRIP12Q14669 1992 aaPredicted RBP10.56□□□□□ -0.72
VPS35-211ENST00000569950 TNRC18O15417 2968 aaPredicted RBP10.55□□□□□ -0.72
VPS35-211ENST00000569950 MYCNP04198 464 aaPredicted RBP10.55□□□□□ -0.72
VPS35-211ENST00000569950 TXNP10599 105 aaKnown RBP10.55□□□□□ -0.72
VPS35-211ENST00000569950 TGFB3P10600 412 aa10.55□□□□□ -0.72
VPS35-211ENST00000569950 AKR1A1P14550 325 aa10.55□□□□□ -0.72
VPS35-211ENST00000569950 GCFC2P16383 781 aaKnown RBP10.55□□□□□ -0.72
VPS35-211ENST00000569950 TNFAIP2Q03169 654 aa10.55□□□□□ -0.72
VPS35-211ENST00000569950 MTMR1Q13613 665 aa10.55□□□□□ -0.72
VPS35-211ENST00000569950 ZNF174Q15697 407 aa10.55□□□□□ -0.72
VPS35-211ENST00000569950 TTC38Q5R3I4 469 aa10.55□□□□□ -0.72
VPS35-211ENST00000569950 FOXD4L5Q5VV16 416 aaPredicted RBP10.55□□□□□ -0.72
VPS35-211ENST00000569950 KLHDC9Q8NEP7 349 aa10.55□□□□□ -0.72
VPS35-211ENST00000569950 FOXD4L4Q8WXT5 416 aaPredicted RBP10.55□□□□□ -0.72
VPS35-211ENST00000569950 EMID1Q96A84 441 aaPredicted RBP10.55□□□□□ -0.72
VPS35-211ENST00000569950 USP28Q96RU2 1077 aa10.55□□□□□ -0.72
VPS35-211ENST00000569950 SENP7Q9BQF6 1050 aa10.55□□□□□ -0.72
VPS35-211ENST00000569950 EHMT1Q9H9B1 1298 aa10.55□□□□□ -0.72
VPS35-211ENST00000569950 DDX20Q9UHI6 824 aaKnown RBP10.55□□□□□ -0.72
VPS35-211ENST00000569950 CLIC4Q9Y696 253 aa10.55□□□□□ -0.72
VPS35-211ENST00000569950 ARID2Q68CP9 1835 aa10.54□□□□□ -0.72
VPS35-211ENST00000569950 GSTTP1A0A1W2PQM5 241 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms